Wall clock time and date at job start Tue Mar 31 2020 22:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35313 * 128.03851 * 2 1 4 4 O 1.34016 * 106.66503 * 179.97438 * 3 2 1 5 5 N 1.20901 * 111.85060 * 359.71306 * 4 3 2 6 6 C 1.30984 * 111.43779 * 0.48431 * 5 4 3 7 7 C 1.48335 * 126.94105 * 179.79789 * 6 5 4 8 8 O 1.21496 * 119.99924 * 179.68249 * 7 6 5 9 9 N 1.34774 * 119.99791 * 359.68680 * 7 6 5 10 10 C 1.47423 * 125.64935 * 0.02562 * 9 7 6 11 11 C 1.54909 * 104.83351 * 155.83866 * 10 9 7 12 12 C 1.55158 * 101.61642 * 36.99324 * 11 10 9 13 13 H 1.08999 * 110.72042 * 82.87870 * 12 11 10 14 14 N 1.46497 * 110.72259 * 206.15767 * 12 11 10 15 15 C 1.34772 * 119.99998 * 204.99892 * 14 12 11 16 16 O 1.21285 * 119.99933 * 359.97438 * 15 14 12 17 17 C 1.50694 * 120.00258 * 179.97438 * 15 14 12 18 18 S 1.81002 * 109.47488 * 179.97438 * 17 15 14 19 19 C 1.76198 * 100.00289 * 180.02562 * 18 17 15 20 20 H 1.08000 * 119.99978 * 0.02562 * 19 18 17 21 21 C 1.38799 * 120.00484 * 179.97438 * 19 18 17 22 22 N 1.31635 * 119.99507 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 120.00462 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47206 * 60.00059 * 23 21 19 25 25 H 1.48496 * 109.47446 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47185 * 300.00553 * 23 21 19 27 27 C 1.47016 * 125.64624 * 179.97438 * 9 7 6 28 28 H 1.09004 * 109.47170 * 270.02249 * 1 2 3 29 29 H 1.09004 * 109.47022 * 30.01837 * 1 2 3 30 30 H 1.09002 * 109.47108 * 150.01702 * 1 2 3 31 31 H 1.07999 * 126.66995 * 0.02562 * 3 2 1 32 32 H 1.09000 * 110.36544 * 37.00287 * 10 9 7 33 33 H 1.09002 * 110.37016 * 274.68213 * 10 9 7 34 34 H 1.09002 * 111.00594 * 155.08642 * 11 10 9 35 35 H 1.09002 * 111.00655 * 278.89906 * 11 10 9 36 36 H 0.96994 * 120.00175 * 24.99235 * 14 12 11 37 37 H 1.08999 * 109.47463 * 300.00621 * 17 15 14 38 38 H 1.08998 * 109.46985 * 60.00108 * 17 15 14 39 39 H 0.96998 * 119.99857 * 179.97438 * 22 21 19 40 40 H 1.09000 * 109.88531 * 300.50046 * 27 9 7 41 41 H 1.09000 * 109.88853 * 61.67215 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.0657 0.0000 4 8 3.5888 0.5773 0.0006 5 7 3.5988 -0.6316 0.0065 6 6 2.3837 -1.1206 0.0004 7 6 1.9991 -2.5532 0.0005 8 8 0.8254 -2.8671 0.0002 9 7 2.9518 -3.5066 0.0011 10 6 4.4065 -3.2676 0.0021 11 6 5.0189 -4.5516 0.6153 12 6 4.0916 -5.6498 0.0309 13 1 4.4064 -5.9248 -0.9757 14 7 4.0640 -6.8245 0.9059 15 6 3.7651 -8.0364 0.3978 16 8 3.5186 -8.1545 -0.7839 17 6 3.7372 -9.2448 1.2977 18 16 3.3065 -10.7104 0.3268 19 6 3.3449 -11.9372 1.5910 20 1 3.5858 -11.6589 2.6064 21 6 3.0645 -13.2610 1.2823 22 7 2.7704 -13.6001 0.0449 23 14 3.1045 -14.5614 2.6227 24 1 2.1119 -14.2201 3.6733 25 1 2.7717 -15.8853 2.0382 26 1 4.4621 -14.6126 3.2224 27 6 2.7123 -4.9571 0.0018 28 1 -0.3634 0.0004 1.0277 29 1 -0.3633 0.8899 -0.5141 30 1 -0.3633 -0.8902 -0.5136 31 1 2.0560 2.1075 0.0004 32 1 4.6481 -2.4009 0.6174 33 1 4.7681 -3.1237 -1.0160 34 1 6.0475 -4.6912 0.2828 35 1 4.9618 -4.5305 1.7036 36 1 4.2608 -6.7300 1.8510 37 1 4.7191 -9.3838 1.7500 38 1 2.9939 -9.0972 2.0812 39 1 2.5747 -14.5253 -0.1710 40 1 2.1385 -5.2377 0.8851 41 1 2.1720 -5.2442 -0.9004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001687186311.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:23 Heat of formation + Delta-G solvation = 1.128839 kcal Electronic energy + Delta-G solvation = -25888.803358 eV Core-core repulsion = 21898.862299 eV Total energy + Delta-G solvation = -3989.941059 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.54108 -40.51312 -39.23705 -37.60815 -35.12034 -34.33430 -32.85308 -32.43875 -31.14752 -29.65131 -28.71007 -28.11053 -25.58052 -25.30175 -23.27879 -22.16780 -21.50584 -20.58595 -20.12007 -18.31391 -18.24777 -17.79130 -17.19877 -16.92790 -16.23192 -15.90385 -15.52808 -15.03371 -14.81277 -14.68669 -14.31175 -13.94062 -13.86671 -13.68335 -13.61832 -13.26987 -13.18169 -12.94475 -12.67165 -12.61046 -12.30119 -12.15549 -11.75598 -11.69553 -11.15468 -11.05532 -11.04481 -10.77933 -10.73038 -10.55033 -9.91199 -9.84336 -9.51045 -9.14579 -9.06487 -9.00486 -8.26471 -6.51864 -6.22596 -3.93630 0.68951 1.21288 2.28133 2.66084 2.77294 2.96752 2.99533 3.22999 3.26563 3.29439 3.44333 3.65106 3.96997 4.13065 4.19385 4.32623 4.41619 4.60138 4.68523 4.81955 4.92956 4.99730 5.12126 5.12534 5.17828 5.23382 5.31902 5.38871 5.43567 5.51784 5.57359 5.69894 5.79192 5.83099 5.84858 5.91023 6.10308 6.49054 6.98736 7.46336 7.57029 7.58949 7.71279 8.33862 8.50087 9.22563 10.84757 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.030706 B = 0.001855 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.661826 B =15090.311930 C =15487.326642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.150 4.150 3 C -0.065 4.065 4 O 0.121 5.879 5 N -0.329 5.329 6 C -0.022 4.022 7 C 0.610 3.390 8 O -0.516 6.516 9 N -0.603 5.603 10 C 0.099 3.901 11 C -0.140 4.140 12 C 0.139 3.861 13 H 0.110 0.890 14 N -0.729 5.729 15 C 0.534 3.466 16 O -0.513 6.513 17 C -0.154 4.154 18 S -0.059 6.059 19 C -0.537 4.537 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.095 3.905 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.224 0.776 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.401 0.599 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.269 0.731 40 H 0.079 0.921 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.670 32.056 2.654 32.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.155 4.155 3 C -0.146 4.146 4 O 0.047 5.953 5 N -0.030 5.030 6 C -0.181 4.181 7 C 0.396 3.604 8 O -0.390 6.390 9 N -0.337 5.337 10 C -0.024 4.024 11 C -0.178 4.178 12 C 0.032 3.968 13 H 0.128 0.872 14 N -0.384 5.384 15 C 0.320 3.680 16 O -0.386 6.386 17 C -0.304 4.304 18 S 0.168 5.832 19 C -0.685 4.685 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.028 4.028 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.240 0.760 32 H 0.112 0.888 33 H 0.095 0.905 34 H 0.114 0.886 35 H 0.102 0.898 36 H 0.236 0.764 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.079 0.921 40 H 0.097 0.903 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.701 30.931 0.542 31.053 hybrid contribution -0.345 -0.375 2.690 2.738 sum 2.357 30.556 3.232 30.817 Atomic orbital electron populations 1.20248 0.86430 1.04049 1.03365 1.21390 0.99234 0.90002 1.04841 1.25798 0.82272 1.01337 1.05187 1.84780 1.29551 1.15353 1.65662 1.74232 1.21448 0.91537 1.15788 1.23359 0.89643 0.96749 1.08377 1.16458 0.84595 0.81839 0.77493 1.90819 1.16880 1.81334 1.49991 1.48216 1.07001 1.06578 1.71945 1.22534 0.78926 0.98788 1.02117 1.23123 1.00016 0.93162 1.01527 1.21849 0.93182 0.85048 0.96748 0.87164 1.45956 1.73737 1.06552 1.12148 1.20405 0.75170 0.83504 0.88884 1.90718 1.46277 1.85159 1.16435 1.23535 1.05277 0.98712 1.02926 1.85411 1.90614 0.94484 1.12703 1.22821 1.55301 0.94354 0.96022 0.90950 1.24996 0.94498 0.97839 0.96253 1.70007 1.43701 1.18780 1.17758 0.86216 0.78712 0.79679 0.80847 1.19931 1.20800 1.19943 1.22552 0.98542 0.77870 1.03845 0.90416 0.90867 0.89359 0.75954 0.88807 0.90504 0.88556 0.89805 0.76408 0.89064 0.89088 0.92102 0.90307 0.89975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.01 36.01 0.36 -0.21 16 2 C -0.15 -1.19 6.34 -104.11 -0.66 -1.85 16 3 C -0.07 -0.32 12.24 29.69 0.36 0.04 16 4 O 0.12 0.86 11.18 17.24 0.19 1.06 16 5 N -0.33 -3.05 9.30 33.29 0.31 -2.74 16 6 C -0.02 -0.23 7.02 -82.52 -0.58 -0.81 16 7 C 0.61 7.82 7.88 -12.11 -0.10 7.73 16 8 O -0.52 -7.99 15.67 5.37 0.08 -7.91 16 9 N -0.60 -6.89 3.33 -171.42 -0.57 -7.46 16 10 C 0.10 0.85 6.18 -2.53 -0.02 0.84 16 11 C -0.14 -1.06 6.71 -24.58 -0.16 -1.22 16 12 C 0.14 1.53 3.32 -66.07 -0.22 1.31 16 13 H 0.11 1.38 7.55 -51.93 -0.39 0.99 16 14 N -0.73 -9.03 5.10 -52.00 -0.27 -9.30 16 15 C 0.53 9.52 7.85 -10.99 -0.09 9.43 16 16 O -0.51 -11.22 15.51 5.55 0.09 -11.13 16 17 C -0.15 -3.01 6.16 36.00 0.22 -2.79 16 18 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 19 C -0.54 -15.21 9.50 30.94 0.29 -14.91 16 20 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 21 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.12 13.22 55.49 0.73 -25.39 16 23 Si 0.92 21.37 29.55 -169.99 -5.02 16.34 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 27 C 0.10 1.18 6.62 -3.04 -0.02 1.16 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 0.80 6.89 -51.93 -0.36 0.45 16 31 H 0.22 0.04 8.06 -52.49 -0.42 -0.38 16 32 H 0.09 0.78 6.23 -51.93 -0.32 0.45 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.56 8.01 -51.93 -0.42 0.14 16 36 H 0.40 3.78 8.56 -40.82 -0.35 3.43 16 37 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 38 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 39 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 40 H 0.08 1.03 8.03 -51.93 -0.42 0.61 16 41 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 366.50 15.07 5.52 5.52 Total: -1.00 -36.83 366.50 -7.02 -43.85 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -5.18 Total: 0.23 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -0.70 Total: 0.71 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: 0.21 Total: -44.89 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: 0.36 Total: -17.98 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.83 -7.02 -43.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001687186311.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.982 kcal (2) G-P(sol) polarization free energy of solvation -36.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds