Wall clock time and date at job start Tue Mar 31 2020 22:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35314 * 128.03794 * 2 1 4 4 O 1.34016 * 106.66567 * 180.22854 * 3 2 1 5 5 N 1.20910 * 111.84898 * 359.76394 * 4 3 2 6 6 C 1.30980 * 111.43759 * 0.02562 * 5 4 3 7 7 C 1.48334 * 126.93721 * 179.97438 * 6 5 4 8 8 O 1.21488 * 119.99755 * 180.02562 * 7 6 5 9 9 N 1.34778 * 119.99917 * 0.02666 * 7 6 5 10 10 C 1.46494 * 119.99999 * 180.02562 * 9 7 6 11 11 H 1.09003 * 110.91449 * 328.90061 * 10 9 7 12 12 C 1.55153 * 111.00503 * 204.99816 * 10 9 7 13 13 C 1.54323 * 103.10236 * 206.33489 * 12 10 9 14 14 N 1.47486 * 107.03754 * 22.24109 * 13 12 10 15 15 C 1.34778 * 125.59413 * 181.00840 * 14 13 12 16 16 O 1.21283 * 119.99795 * 180.02562 * 15 14 13 17 17 C 1.50698 * 120.00167 * 0.02562 * 15 14 13 18 18 S 1.80997 * 109.47226 * 180.02562 * 17 15 14 19 19 C 1.76199 * 99.99818 * 179.97438 * 18 17 15 20 20 H 1.08000 * 120.00194 * 0.02562 * 19 18 17 21 21 C 1.38802 * 119.99849 * 179.97438 * 19 18 17 22 22 N 1.31629 * 120.00062 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 120.00065 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47171 * 89.99724 * 23 21 19 25 25 H 1.48503 * 109.46900 * 210.00060 * 23 21 19 26 26 H 1.48501 * 109.47025 * 329.99781 * 23 21 19 27 27 C 1.47428 * 108.75727 * 1.02624 * 14 13 12 28 28 H 1.08997 * 109.47233 * 270.14125 * 1 2 3 29 29 H 1.08996 * 109.47359 * 30.14820 * 1 2 3 30 30 H 1.09012 * 109.47219 * 150.14647 * 1 2 3 31 31 H 1.07992 * 126.66657 * 0.02562 * 3 2 1 32 32 H 0.97002 * 120.00010 * 359.97438 * 9 7 6 33 33 H 1.09002 * 110.72030 * 324.78756 * 12 10 9 34 34 H 1.09003 * 110.72184 * 87.88407 * 12 10 9 35 35 H 1.09000 * 109.88693 * 141.69901 * 13 12 10 36 36 H 1.09005 * 109.88012 * 262.86516 * 13 12 10 37 37 H 1.09008 * 109.46920 * 300.00630 * 17 15 14 38 38 H 1.09000 * 109.46934 * 60.00192 * 17 15 14 39 39 H 0.97000 * 120.00250 * 179.97438 * 22 21 19 40 40 H 1.09000 * 110.36462 * 217.05803 * 27 14 13 41 41 H 1.08996 * 110.46287 * 94.77884 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3407 1.0657 0.0000 4 8 3.5887 0.5773 -0.0051 5 7 3.5988 -0.6317 -0.0035 6 6 2.3837 -1.1206 0.0023 7 6 1.9992 -2.5532 0.0053 8 8 0.8256 -2.8671 0.0103 9 7 2.9519 -3.5066 0.0026 10 6 2.5722 -4.9215 0.0051 11 1 1.6311 -5.0709 0.5345 12 6 3.6981 -5.7984 0.6138 13 6 3.4726 -7.1709 -0.0547 14 7 2.7180 -6.9271 -1.2982 15 6 2.3044 -7.8743 -2.1633 16 8 1.6885 -7.5586 -3.1593 17 6 2.6072 -9.3256 -1.8931 18 16 1.9264 -10.3424 -3.2267 19 6 2.4126 -11.9421 -2.6704 20 1 2.9639 -12.0485 -1.7478 21 6 2.0860 -13.0655 -3.4173 22 7 2.4488 -14.2605 -3.0015 23 14 1.1318 -12.8815 -5.0126 24 1 2.0820 -12.7131 -6.1412 25 1 0.3055 -14.0947 -5.2378 26 1 0.2491 -11.6904 -4.9268 27 6 2.4913 -5.4772 -1.4387 28 1 -0.3633 0.0025 1.0276 29 1 -0.3634 0.8886 -0.5161 30 1 -0.3634 -0.8914 -0.5116 31 1 2.0559 2.1074 0.0004 32 1 3.8889 -3.2559 -0.0017 33 1 4.6793 -5.4001 0.3555 34 1 3.5864 -5.8733 1.6955 35 1 4.4324 -7.6333 -0.2851 36 1 2.8976 -7.8165 0.6091 37 1 3.6867 -9.4682 -1.8426 38 1 2.1571 -9.6202 -0.9451 39 1 2.2203 -15.0457 -3.5232 40 1 1.5059 -5.2867 -1.8638 41 1 3.2655 -5.0291 -2.0615 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001687918243.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:07 Heat of formation + Delta-G solvation = -2.603745 kcal Electronic energy + Delta-G solvation = -25811.127118 eV Core-core repulsion = 21821.024202 eV Total energy + Delta-G solvation = -3990.102916 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.61245 -40.54792 -39.45934 -37.43509 -35.19993 -34.73374 -32.88460 -32.44103 -31.11519 -29.83457 -28.74827 -28.08129 -25.64679 -25.24119 -23.48992 -22.20907 -21.62714 -21.08192 -19.52748 -18.88193 -18.29453 -17.75215 -17.23492 -16.90935 -16.60785 -15.65547 -15.45804 -15.10161 -14.95121 -14.82296 -14.40238 -14.14492 -13.82288 -13.75487 -13.70763 -13.59008 -13.14788 -12.88113 -12.85597 -12.71234 -12.17018 -12.04086 -11.90327 -11.86761 -11.27405 -11.23480 -11.00599 -10.83020 -10.70696 -10.61548 -9.96930 -9.87386 -9.73136 -9.51588 -9.00401 -8.65375 -8.50270 -6.92606 -6.29097 -4.01027 0.59867 1.14166 2.24343 2.57798 2.65318 2.74127 2.91899 3.18411 3.33517 3.41803 3.51291 3.59321 3.96181 4.10101 4.25077 4.33468 4.34083 4.53756 4.56724 4.69262 4.82575 4.87636 4.98282 5.09982 5.12792 5.16307 5.18918 5.33298 5.34057 5.44876 5.52142 5.59220 5.67215 5.78565 5.80016 5.89955 5.99750 6.25352 6.83712 7.42726 7.49362 7.59955 7.93884 8.39297 8.41196 9.17087 10.80013 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.029995 B = 0.001922 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.268118 B =14565.571067 C =15036.543412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.149 4.149 3 C -0.065 4.065 4 O 0.125 5.875 5 N -0.330 5.330 6 C -0.030 4.030 7 C 0.602 3.398 8 O -0.510 6.510 9 N -0.705 5.705 10 C 0.131 3.869 11 H 0.113 0.887 12 C -0.137 4.137 13 C 0.103 3.897 14 N -0.625 5.625 15 C 0.548 3.452 16 O -0.515 6.515 17 C -0.117 4.117 18 S -0.142 6.142 19 C -0.521 4.521 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.099 3.901 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.225 0.775 32 H 0.409 0.591 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.271 0.729 40 H 0.085 0.915 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.786 32.143 11.633 34.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.154 4.154 3 C -0.145 4.145 4 O 0.049 5.951 5 N -0.031 5.031 6 C -0.189 4.189 7 C 0.386 3.614 8 O -0.383 6.383 9 N -0.357 5.357 10 C 0.026 3.974 11 H 0.131 0.869 12 C -0.175 4.175 13 C -0.020 4.020 14 N -0.363 5.363 15 C 0.336 3.664 16 O -0.388 6.388 17 C -0.268 4.268 18 S 0.084 5.916 19 C -0.668 4.668 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.516 5.516 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.025 4.025 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.107 0.893 31 H 0.241 0.759 32 H 0.245 0.755 33 H 0.103 0.897 34 H 0.111 0.889 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.081 0.919 40 H 0.103 0.897 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.177 31.455 10.063 33.097 hybrid contribution 0.215 -0.213 0.544 0.623 sum 2.392 31.242 10.607 33.080 Atomic orbital electron populations 1.20257 0.86351 1.04173 1.03374 1.21409 0.99278 0.89993 1.04698 1.25829 0.82170 1.01439 1.05105 1.84774 1.29589 1.15092 1.65607 1.74161 1.21533 0.91835 1.15526 1.23408 0.89739 0.96943 1.08793 1.16864 0.85597 0.82375 0.76597 1.90830 1.17301 1.81509 1.48698 1.45682 1.09944 1.05503 1.74540 1.22209 1.00003 0.78680 0.96533 0.86864 1.22938 0.98726 0.94513 1.01348 1.22094 0.97201 0.96864 0.85870 1.48456 1.57671 1.06079 1.24084 1.20025 0.78036 0.86512 0.81781 1.90719 1.39236 1.82186 1.26709 1.23252 1.05270 0.92981 1.05257 1.84821 1.74337 1.02238 1.30181 1.22302 1.42285 0.89459 1.12801 0.89358 1.24709 0.94676 0.94135 0.97774 1.69935 1.44897 0.97849 1.38958 0.86738 0.81584 0.79876 0.83687 1.19203 1.19914 1.15906 1.22465 1.03015 0.80973 0.96096 0.90385 0.90812 0.89296 0.75857 0.75522 0.89741 0.88917 0.90395 0.90427 0.88501 0.88407 0.91935 0.89682 0.91343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.51 10.01 36.00 0.36 -0.15 16 2 C -0.15 -1.06 6.34 -104.12 -0.66 -1.72 16 3 C -0.06 -0.28 12.24 29.69 0.36 0.08 16 4 O 0.13 0.83 11.18 17.24 0.19 1.02 16 5 N -0.33 -2.81 11.84 33.29 0.39 -2.42 16 6 C -0.03 -0.27 7.19 -82.53 -0.59 -0.87 16 7 C 0.60 6.33 7.85 -12.11 -0.09 6.23 16 8 O -0.51 -6.75 14.98 5.38 0.08 -6.67 16 9 N -0.70 -5.98 5.19 -52.52 -0.27 -6.25 16 10 C 0.13 1.20 3.42 -65.78 -0.23 0.98 16 11 H 0.11 1.18 7.54 -51.93 -0.39 0.78 16 12 C -0.14 -0.93 6.58 -24.90 -0.16 -1.09 16 13 C 0.10 0.99 6.52 -2.81 -0.02 0.97 16 14 N -0.62 -8.69 3.34 -170.14 -0.57 -9.26 16 15 C 0.55 10.28 7.87 -10.99 -0.09 10.20 16 16 O -0.51 -11.69 16.12 5.55 0.09 -11.60 16 17 C -0.12 -2.31 5.35 36.00 0.19 -2.12 16 18 S -0.14 -3.66 18.55 -107.50 -1.99 -5.65 16 19 C -0.52 -15.06 10.04 30.94 0.31 -14.75 16 20 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 21 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 22 N -0.88 -26.58 13.97 55.49 0.78 -25.81 16 23 Si 0.86 21.95 27.74 -169.99 -4.72 17.24 16 24 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.24 -6.04 6.74 56.52 0.38 -5.66 16 27 C 0.10 1.22 6.60 -2.52 -0.02 1.20 16 28 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.09 0.74 6.89 -51.92 -0.36 0.38 16 31 H 0.23 -0.07 8.06 -52.49 -0.42 -0.49 16 32 H 0.41 2.75 8.33 -40.82 -0.34 2.41 16 33 H 0.08 0.46 8.00 -51.93 -0.42 0.04 16 34 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.10 1.77 8.14 -51.91 -0.42 1.35 16 38 H 0.10 1.80 8.14 -51.92 -0.42 1.37 16 39 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 40 H 0.08 1.25 8.04 -51.93 -0.42 0.83 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 367.71 15.07 5.54 5.54 Total: -1.00 -37.03 367.71 -6.51 -43.54 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -5.30 Total: -1.37 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -0.73 Total: 1.69 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: 0.33 Total: -43.73 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: 0.36 Total: -17.25 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.72 Total: 17.24 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -1.99 Total: -5.65 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -37.03 -6.51 -43.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001687918243.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.937 kcal (2) G-P(sol) polarization free energy of solvation -37.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds