Wall clock time and date at job start Tue Mar 31 2020 22:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35314 * 128.03794 * 2 1 4 4 O 1.34016 * 106.66567 * 180.22854 * 3 2 1 5 5 N 1.20910 * 111.84898 * 359.76394 * 4 3 2 6 6 C 1.30980 * 111.43759 * 0.02562 * 5 4 3 7 7 C 1.48334 * 126.93721 * 179.97438 * 6 5 4 8 8 O 1.21488 * 119.99755 * 180.02562 * 7 6 5 9 9 N 1.34778 * 119.99917 * 0.02666 * 7 6 5 10 10 C 1.46494 * 119.99999 * 180.02562 * 9 7 6 11 11 H 1.09003 * 110.91449 * 328.90061 * 10 9 7 12 12 C 1.55153 * 111.00503 * 204.99816 * 10 9 7 13 13 C 1.54323 * 103.10236 * 206.33489 * 12 10 9 14 14 N 1.47486 * 107.03754 * 22.24109 * 13 12 10 15 15 C 1.34778 * 125.59413 * 181.00840 * 14 13 12 16 16 O 1.21283 * 119.99795 * 180.02562 * 15 14 13 17 17 C 1.50698 * 120.00167 * 0.02562 * 15 14 13 18 18 S 1.80997 * 109.47226 * 180.02562 * 17 15 14 19 19 C 1.76199 * 99.99818 * 179.97438 * 18 17 15 20 20 H 1.08000 * 120.00194 * 0.02562 * 19 18 17 21 21 C 1.38802 * 119.99849 * 179.97438 * 19 18 17 22 22 N 1.31629 * 120.00062 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 120.00065 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47171 * 89.99724 * 23 21 19 25 25 H 1.48503 * 109.46900 * 210.00060 * 23 21 19 26 26 H 1.48501 * 109.47025 * 329.99781 * 23 21 19 27 27 C 1.47428 * 108.75727 * 1.02624 * 14 13 12 28 28 H 1.08997 * 109.47233 * 270.14125 * 1 2 3 29 29 H 1.08996 * 109.47359 * 30.14820 * 1 2 3 30 30 H 1.09012 * 109.47219 * 150.14647 * 1 2 3 31 31 H 1.07992 * 126.66657 * 0.02562 * 3 2 1 32 32 H 0.97002 * 120.00010 * 359.97438 * 9 7 6 33 33 H 1.09002 * 110.72030 * 324.78756 * 12 10 9 34 34 H 1.09003 * 110.72184 * 87.88407 * 12 10 9 35 35 H 1.09000 * 109.88693 * 141.69901 * 13 12 10 36 36 H 1.09005 * 109.88012 * 262.86516 * 13 12 10 37 37 H 1.09008 * 109.46920 * 300.00630 * 17 15 14 38 38 H 1.09000 * 109.46934 * 60.00192 * 17 15 14 39 39 H 0.97000 * 120.00250 * 179.97438 * 22 21 19 40 40 H 1.09000 * 110.36462 * 217.05803 * 27 14 13 41 41 H 1.08996 * 110.46287 * 94.77884 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3407 1.0657 0.0000 4 8 3.5887 0.5773 -0.0051 5 7 3.5988 -0.6317 -0.0035 6 6 2.3837 -1.1206 0.0023 7 6 1.9992 -2.5532 0.0053 8 8 0.8256 -2.8671 0.0103 9 7 2.9519 -3.5066 0.0026 10 6 2.5722 -4.9215 0.0051 11 1 1.6311 -5.0709 0.5345 12 6 3.6981 -5.7984 0.6138 13 6 3.4726 -7.1709 -0.0547 14 7 2.7180 -6.9271 -1.2982 15 6 2.3044 -7.8743 -2.1633 16 8 1.6885 -7.5586 -3.1593 17 6 2.6072 -9.3256 -1.8931 18 16 1.9264 -10.3424 -3.2267 19 6 2.4126 -11.9421 -2.6704 20 1 2.9639 -12.0485 -1.7478 21 6 2.0860 -13.0655 -3.4173 22 7 2.4488 -14.2605 -3.0015 23 14 1.1318 -12.8815 -5.0126 24 1 2.0820 -12.7131 -6.1412 25 1 0.3055 -14.0947 -5.2378 26 1 0.2491 -11.6904 -4.9268 27 6 2.4913 -5.4772 -1.4387 28 1 -0.3633 0.0025 1.0276 29 1 -0.3634 0.8886 -0.5161 30 1 -0.3634 -0.8914 -0.5116 31 1 2.0559 2.1074 0.0004 32 1 3.8889 -3.2559 -0.0017 33 1 4.6793 -5.4001 0.3555 34 1 3.5864 -5.8733 1.6955 35 1 4.4324 -7.6333 -0.2851 36 1 2.8976 -7.8165 0.6091 37 1 3.6867 -9.4682 -1.8426 38 1 2.1571 -9.6202 -0.9451 39 1 2.2203 -15.0457 -3.5232 40 1 1.5059 -5.2867 -1.8638 41 1 3.2655 -5.0291 -2.0615 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001687918243.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:07 Heat of formation + Delta-G solvation = -30.288516 kcal Electronic energy + Delta-G solvation = -25812.327620 eV Core-core repulsion = 21821.024202 eV Total energy + Delta-G solvation = -3991.303418 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -46.15742 -41.50030 -40.58722 -38.59553 -35.74625 -35.65191 -34.68667 -33.50242 -32.21840 -30.97045 -29.43967 -28.96944 -27.86300 -26.04610 -24.44060 -22.72851 -22.35877 -21.82154 -20.85303 -19.78934 -19.34937 -18.85102 -18.24880 -18.02464 -17.49191 -17.16579 -16.77523 -16.59293 -16.08344 -15.74803 -15.57865 -15.37547 -14.92125 -14.70603 -14.58763 -14.29119 -14.23380 -14.12004 -13.91863 -13.53429 -13.37326 -13.36164 -13.03547 -12.89642 -12.76340 -12.68334 -12.42904 -11.95893 -11.89192 -11.50590 -11.42558 -11.18630 -11.14309 -10.56116 -10.49111 -10.40237 -9.82635 -9.03427 -8.52954 -6.24435 -0.00330 0.68603 0.91341 1.29630 1.36476 1.44044 1.48638 1.64136 1.90801 2.04777 2.23377 2.24953 2.65453 2.80222 2.85154 3.22337 3.40468 3.55563 3.72475 3.86688 3.87434 4.05293 4.08940 4.12906 4.21907 4.37641 4.41419 4.52387 4.64423 4.70816 4.76145 4.80191 4.84802 4.92617 4.95704 5.08749 5.25687 5.32946 5.69615 6.10071 6.13029 6.23194 6.79370 6.92165 6.96535 6.99549 8.59172 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.029995 B = 0.001922 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.268118 B =14565.571067 C =15036.543412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.176 4.176 3 C -0.032 4.032 4 O 0.131 5.869 5 N -0.343 5.343 6 C -0.056 4.056 7 C 0.598 3.402 8 O -0.547 6.547 9 N -0.692 5.692 10 C 0.140 3.860 11 H 0.101 0.899 12 C -0.119 4.119 13 C 0.091 3.909 14 N -0.615 5.615 15 C 0.547 3.453 16 O -0.566 6.566 17 C -0.100 4.100 18 S -0.180 6.180 19 C -0.527 4.527 20 H 0.065 0.935 21 C 0.047 3.953 22 N -0.914 5.914 23 Si 0.912 3.088 24 H -0.262 1.262 25 H -0.258 1.258 26 H -0.240 1.240 27 C 0.097 3.903 28 H 0.080 0.920 29 H 0.101 0.899 30 H 0.057 0.943 31 H 0.275 0.725 32 H 0.420 0.580 33 H 0.107 0.893 34 H 0.119 0.881 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.277 0.723 40 H 0.053 0.947 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.900 34.831 12.733 37.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.182 4.182 3 C -0.112 4.112 4 O 0.053 5.947 5 N -0.043 5.043 6 C -0.214 4.214 7 C 0.383 3.617 8 O -0.422 6.422 9 N -0.344 5.344 10 C 0.034 3.966 11 H 0.119 0.881 12 C -0.157 4.157 13 C -0.031 4.031 14 N -0.350 5.350 15 C 0.335 3.665 16 O -0.444 6.444 17 C -0.250 4.250 18 S 0.047 5.953 19 C -0.674 4.674 20 H 0.084 0.916 21 C -0.158 4.158 22 N -0.552 5.552 23 Si 0.734 3.266 24 H -0.187 1.187 25 H -0.182 1.182 26 H -0.164 1.164 27 C -0.027 4.027 28 H 0.099 0.901 29 H 0.119 0.881 30 H 0.076 0.924 31 H 0.290 0.710 32 H 0.258 0.742 33 H 0.126 0.874 34 H 0.138 0.862 35 H 0.112 0.888 36 H 0.106 0.894 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.087 0.913 40 H 0.072 0.928 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.354 34.147 11.219 36.099 hybrid contribution -0.052 -0.866 0.328 0.927 sum 3.302 33.281 11.547 35.382 Atomic orbital electron populations 1.20219 0.86026 1.03966 1.03519 1.21683 0.99882 0.90268 1.06355 1.26656 0.80356 1.02692 1.01494 1.84746 1.30740 1.14398 1.64803 1.74156 1.21252 0.92698 1.16169 1.23403 0.90808 0.96626 1.10517 1.17172 0.85317 0.83365 0.75877 1.90810 1.18758 1.82229 1.50446 1.45580 1.10270 1.04902 1.73678 1.22029 1.00918 0.79393 0.94245 0.88093 1.22948 0.98562 0.91762 1.02409 1.22518 0.97427 0.99088 0.84088 1.48373 1.56337 1.06003 1.24317 1.19777 0.78051 0.86709 0.81962 1.90697 1.41864 1.82787 1.29065 1.23188 1.06029 0.92668 1.03153 1.84799 1.75314 1.01678 1.33549 1.22418 1.41739 0.91275 1.11994 0.91641 1.25523 0.95588 0.93949 1.00783 1.70005 1.46108 0.98634 1.40449 0.85899 0.80516 0.80118 0.80037 1.18673 1.18195 1.16378 1.22555 1.01559 0.80164 0.98443 0.90124 0.88079 0.92357 0.70953 0.74215 0.87447 0.86242 0.88797 0.89422 0.86617 0.86765 0.91326 0.92799 0.90574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 10.01 71.23 0.71 -0.20 16 2 C -0.18 -2.26 6.34 -19.54 -0.12 -2.38 16 3 C -0.03 -0.18 12.24 67.14 0.82 0.65 16 4 O 0.13 1.40 11.18 71.87 0.80 2.20 16 5 N -0.34 -5.34 11.84 -49.52 -0.59 -5.93 16 6 C -0.06 -0.99 7.19 42.96 0.31 -0.68 16 7 C 0.60 12.69 7.85 86.93 0.68 13.37 16 8 O -0.55 -15.16 14.98 -3.68 -0.06 -15.22 16 9 N -0.69 -11.10 5.19 -438.37 -2.28 -13.38 16 10 C 0.14 2.41 3.42 46.39 0.16 2.57 16 11 H 0.10 2.06 7.54 -2.39 -0.02 2.04 16 12 C -0.12 -1.22 6.58 31.78 0.21 -1.01 16 13 C 0.09 1.48 6.52 86.64 0.57 2.05 16 14 N -0.61 -16.52 3.34 -810.59 -2.71 -19.22 16 15 C 0.55 20.45 7.87 87.66 0.69 21.14 16 16 O -0.57 -26.34 16.12 -3.04 -0.05 -26.39 16 17 C -0.10 -3.88 5.35 71.24 0.38 -3.50 16 18 S -0.18 -9.32 18.55 -56.49 -1.05 -10.37 16 19 C -0.53 -30.83 10.04 67.95 0.68 -30.14 16 20 H 0.07 4.00 8.03 -2.91 -0.02 3.98 16 21 C 0.05 2.79 5.50 84.86 0.47 3.25 16 22 N -0.91 -55.68 13.97 21.65 0.30 -55.37 16 23 Si 0.91 45.57 27.74 68.60 1.90 47.47 16 24 H -0.26 -12.77 7.11 99.48 0.71 -12.06 16 25 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 26 H -0.24 -12.08 6.74 99.48 0.67 -11.41 16 27 C 0.10 2.38 6.60 86.86 0.57 2.95 16 28 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.06 1.03 6.89 -2.38 -0.02 1.02 16 31 H 0.27 -1.60 8.06 -2.91 -0.02 -1.62 16 32 H 0.42 4.90 8.33 -92.71 -0.77 4.13 16 33 H 0.11 0.69 8.00 -2.39 -0.02 0.67 16 34 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 37 H 0.12 4.07 8.14 -2.39 -0.02 4.05 16 38 H 0.11 4.07 8.14 -2.39 -0.02 4.05 16 39 H 0.28 15.62 8.31 -92.71 -0.77 14.85 16 40 H 0.05 1.67 8.04 -2.39 -0.02 1.65 16 41 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -84.44 367.71 2.68 -81.76 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: 0.27 Total: 6.38 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: 6.13 Total: 8.08 kcal Atomic # 7 Polarization: -88.64 SS G_CDS: -5.27 Total: -93.91 kcal Atomic # 8 Polarization: -40.10 SS G_CDS: 0.70 Total: -39.40 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.90 Total: 47.47 kcal Atomic # 16 Polarization: -9.32 SS G_CDS: -1.05 Total: -10.37 kcal Total: -84.44 2.68 -81.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001687918243.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.467 kcal (2) G-P(sol) polarization free energy of solvation -84.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds