Wall clock time and date at job start Tue Mar 31 2020 22:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50691 * 109.47769 * 2 1 4 4 N 1.30011 * 127.33686 * 269.97919 * 3 2 1 5 5 O 1.20658 * 112.30477 * 180.02562 * 4 3 2 6 6 C 1.33494 * 113.15495 * 359.97438 * 5 4 3 7 7 C 1.37353 * 106.34239 * 0.02562 * 6 5 4 8 8 C 1.47393 * 128.56629 * 180.02562 * 7 6 5 9 9 O 1.21613 * 120.00355 * 179.97438 * 8 7 6 10 10 N 1.34773 * 120.00148 * 359.97438 * 8 7 6 11 11 C 1.47070 * 136.05722 * 359.62943 * 10 8 7 12 12 C 1.53754 * 87.89084 * 152.96215 * 11 10 8 13 13 N 1.46497 * 114.26479 * 139.79059 * 12 11 10 14 14 C 1.34774 * 120.00066 * 111.48101 * 13 12 11 15 15 O 1.21283 * 119.99776 * 359.97438 * 14 13 12 16 16 C 1.50701 * 120.00245 * 179.97438 * 14 13 12 17 17 S 1.81004 * 109.47130 * 179.97438 * 16 14 13 18 18 C 1.76200 * 99.99945 * 180.02562 * 17 16 14 19 19 H 1.08002 * 120.00046 * 359.97438 * 18 17 16 20 20 C 1.38795 * 120.00022 * 180.02562 * 18 17 16 21 21 N 1.31629 * 120.00037 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00051 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47205 * 59.99981 * 22 20 18 24 24 H 1.48502 * 109.47252 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47244 * 299.99669 * 22 20 18 26 26 C 1.47071 * 136.06212 * 180.02562 * 10 8 7 27 27 H 1.08997 * 109.47697 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46640 * 299.99937 * 1 2 3 29 29 H 1.09005 * 109.47316 * 59.99559 * 1 2 3 30 30 H 1.09003 * 109.47079 * 239.99907 * 2 1 3 31 31 H 1.08997 * 109.47426 * 120.00786 * 2 1 3 32 32 H 1.07998 * 126.82471 * 180.02562 * 6 5 4 33 33 H 1.09001 * 113.46743 * 267.69676 * 11 10 8 34 34 H 1.09000 * 113.46394 * 38.13062 * 11 10 8 35 35 H 1.08997 * 114.39445 * 272.67781 * 12 11 10 36 36 H 0.97003 * 120.00206 * 291.47405 * 13 12 11 37 37 H 1.08989 * 109.47126 * 299.99542 * 16 14 13 38 38 H 1.09001 * 109.47065 * 60.00230 * 16 14 13 39 39 H 0.97007 * 120.00379 * 180.02562 * 21 20 18 40 40 H 1.09000 * 113.46129 * 321.85938 * 26 10 8 41 41 H 1.08998 * 113.47105 * 92.30050 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2957 2.1639 -1.0337 5 8 2.6846 3.2624 -0.7208 6 6 2.7470 3.4404 0.6008 7 6 2.3298 2.2619 1.1696 8 6 2.2090 1.9237 2.5991 9 8 1.8184 0.8213 2.9324 10 7 2.5312 2.8363 3.5371 11 6 3.0282 4.2205 3.5412 12 6 2.3435 4.4021 4.9058 13 7 3.1240 5.1784 5.8724 14 6 2.7041 6.4022 6.2499 15 8 1.6804 6.8610 5.7889 16 6 3.5066 7.2006 7.2447 17 16 2.6897 8.7879 7.5438 18 6 3.8091 9.4936 8.7073 19 1 4.6853 8.9429 9.0161 20 6 3.5642 10.7567 9.2278 21 7 2.4960 11.4277 8.8518 22 14 4.7505 11.5046 10.4618 23 1 6.0957 11.6255 9.8446 24 1 4.2665 12.8507 10.8606 25 1 4.8325 10.6324 11.6608 26 6 2.5474 2.8839 5.0069 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.0626 4.3336 1.1195 33 1 4.1149 4.2913 3.5880 34 1 2.5986 4.8382 2.7526 35 1 1.2996 4.7103 4.8482 36 1 3.9429 4.8117 6.2409 37 1 3.5794 6.6470 8.1807 38 1 4.5065 7.3762 6.8476 39 1 2.3249 12.3107 9.2152 40 1 1.7079 2.3629 5.4673 41 1 3.5074 2.6027 5.4399 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688593089.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:38 Heat of formation + Delta-G solvation = 30.478098 kcal Electronic energy + Delta-G solvation = -25624.566687 eV Core-core repulsion = 21635.898308 eV Total energy + Delta-G solvation = -3988.668380 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.33282 -41.03765 -39.21130 -38.00502 -35.57544 -33.99878 -32.81550 -32.49038 -31.61845 -30.16224 -28.49705 -26.68807 -25.57353 -25.11982 -24.45262 -22.18541 -21.28368 -20.74068 -19.98233 -18.15983 -18.03151 -17.94754 -17.25373 -17.04538 -16.43362 -16.36671 -15.33814 -15.07005 -14.87023 -14.83860 -14.65197 -14.33933 -13.97760 -13.71660 -13.44955 -13.33013 -13.17763 -13.02950 -12.60351 -12.57292 -12.15839 -12.08353 -11.94218 -11.46041 -11.30907 -11.11446 -11.08637 -10.83389 -10.55510 -10.37340 -10.20919 -9.90139 -9.62052 -9.30386 -9.17958 -9.10746 -8.33340 -6.58251 -6.27823 -3.99484 0.59748 1.37666 2.01564 2.63796 2.70478 2.81173 2.96355 3.19221 3.23477 3.26019 3.53056 3.58569 3.80965 3.88081 4.08631 4.14227 4.38673 4.41415 4.65587 4.72617 4.84025 4.90681 4.91919 4.94132 4.99667 5.06416 5.07628 5.19826 5.28056 5.46061 5.47494 5.53050 5.71356 5.74247 5.76520 5.86825 6.02447 6.31921 7.10528 7.43628 7.53291 7.61254 7.78350 8.28527 8.37172 9.17595 10.79438 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.029475 B = 0.001800 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.737595 B =15555.414353 C =15940.382982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.048 4.048 3 C 0.075 3.925 4 N -0.356 5.356 5 O 0.099 5.901 6 C -0.003 4.003 7 C -0.250 4.250 8 C 0.630 3.370 9 O -0.523 6.523 10 N -0.640 5.640 11 C 0.071 3.929 12 C 0.121 3.879 13 N -0.726 5.726 14 C 0.536 3.464 15 O -0.511 6.511 16 C -0.155 4.155 17 S -0.059 6.059 18 C -0.538 4.538 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.100 3.900 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.226 0.774 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.135 0.865 36 H 0.403 0.597 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.270 0.730 40 H 0.091 0.909 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.771 -20.426 -14.472 25.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.086 4.086 3 C -0.088 4.088 4 N -0.063 5.063 5 O 0.040 5.960 6 C -0.085 4.085 7 C -0.257 4.257 8 C 0.420 3.580 9 O -0.400 6.400 10 N -0.376 5.376 11 C -0.054 4.054 12 C 0.013 3.987 13 N -0.381 5.381 14 C 0.323 3.677 15 O -0.384 6.384 16 C -0.305 4.305 17 S 0.168 5.832 18 C -0.686 4.686 19 H 0.091 0.909 20 C -0.135 4.135 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.023 4.023 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.101 0.899 31 H 0.118 0.882 32 H 0.243 0.757 33 H 0.115 0.885 34 H 0.104 0.896 35 H 0.153 0.847 36 H 0.238 0.762 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.079 0.921 40 H 0.109 0.891 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.612 -20.390 -16.537 26.260 hybrid contribution 2.524 -0.086 2.345 3.446 sum 3.135 -20.475 -14.192 25.109 Atomic orbital electron populations 1.21671 0.93445 1.02623 1.02342 1.20062 0.96897 0.87176 1.04435 1.24888 0.98929 0.98929 0.86096 1.73697 1.16500 0.92578 1.23509 1.84607 1.61778 1.26643 1.23007 1.26756 0.97679 1.00024 0.84042 1.22169 1.13069 0.95491 0.95010 1.16145 0.77123 0.82591 0.82124 1.90818 1.46902 1.20797 1.81488 1.49003 1.65721 1.15157 1.07734 1.23941 1.00718 0.81114 0.99597 1.22646 0.98403 0.89967 0.87635 1.45837 1.28081 1.18123 1.46016 1.20422 0.85459 0.80405 0.81410 1.90724 1.24197 1.68873 1.54561 1.23543 1.03238 1.03881 0.99873 1.85422 1.33525 1.07361 1.56909 1.22813 1.11441 1.04981 1.29355 0.90908 1.24990 0.95874 0.95952 0.96706 1.69999 1.25396 1.12810 1.42002 0.86222 0.80410 0.78227 0.80632 1.19927 1.20792 1.19918 1.23394 1.03511 0.95427 0.79993 0.91353 0.92016 0.92638 0.89900 0.88204 0.75746 0.88465 0.89578 0.84697 0.76196 0.88960 0.88975 0.92057 0.89083 0.88916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.89 37.16 0.37 -0.77 16 2 C -0.05 -0.41 6.19 -27.89 -0.17 -0.58 16 3 C 0.07 0.76 6.84 -79.77 -0.55 0.22 16 4 N -0.36 -3.79 12.01 34.78 0.42 -3.37 16 5 O 0.10 0.89 11.06 18.65 0.21 1.10 16 6 C 0.00 -0.02 11.48 30.41 0.35 0.33 16 7 C -0.25 -2.41 6.46 -102.90 -0.66 -3.07 16 8 C 0.63 6.79 8.06 -12.54 -0.10 6.69 16 9 O -0.52 -7.12 16.47 5.27 0.09 -7.04 16 10 N -0.64 -5.41 3.69 -186.36 -0.69 -6.10 16 11 C 0.07 0.46 7.09 -8.38 -0.06 0.40 16 12 C 0.12 1.02 4.62 -67.67 -0.31 0.71 16 13 N -0.73 -6.99 5.39 -53.48 -0.29 -7.28 16 14 C 0.54 8.32 7.85 -10.99 -0.09 8.23 16 15 O -0.51 -10.06 15.45 5.55 0.09 -9.97 16 16 C -0.15 -2.73 6.16 36.01 0.22 -2.51 16 17 S -0.06 -1.49 20.57 -107.50 -2.21 -3.70 16 18 C -0.54 -14.59 9.50 30.94 0.29 -14.30 16 19 H 0.07 1.85 7.80 -52.49 -0.41 1.45 16 20 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 21 N -0.87 -25.30 13.22 55.49 0.73 -24.56 16 22 Si 0.92 20.64 29.55 -169.99 -5.02 15.61 16 23 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 26 C 0.10 0.72 8.38 -8.50 -0.07 0.65 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.10 0.92 7.11 -51.93 -0.37 0.55 16 32 H 0.23 0.83 5.54 -52.49 -0.29 0.54 16 33 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.09 0.47 6.28 -51.93 -0.33 0.14 16 35 H 0.14 1.42 7.45 -51.93 -0.39 1.03 16 36 H 0.40 2.64 8.76 -40.82 -0.36 2.28 16 37 H 0.09 1.50 8.14 -51.92 -0.42 1.07 16 38 H 0.09 1.47 8.14 -51.91 -0.42 1.05 16 39 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.09 0.50 8.13 -51.93 -0.42 0.07 16 LS Contribution 371.29 15.07 5.60 5.60 Total: -1.00 -35.95 371.29 -7.04 -42.99 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -5.08 Total: -1.21 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -0.88 Total: -2.06 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: 0.18 Total: -41.31 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: 0.38 Total: -15.91 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -2.21 Total: -3.70 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.95 -7.04 -42.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688593089.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.468 kcal (2) G-P(sol) polarization free energy of solvation -35.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds