Wall clock time and date at job start Tue Mar 31 2020 22:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50691 * 109.47769 * 2 1 4 4 N 1.30011 * 127.33686 * 269.97919 * 3 2 1 5 5 O 1.20658 * 112.30477 * 180.02562 * 4 3 2 6 6 C 1.33494 * 113.15495 * 359.97438 * 5 4 3 7 7 C 1.37353 * 106.34239 * 0.02562 * 6 5 4 8 8 C 1.47393 * 128.56629 * 180.02562 * 7 6 5 9 9 O 1.21613 * 120.00355 * 179.97438 * 8 7 6 10 10 N 1.34773 * 120.00148 * 359.97438 * 8 7 6 11 11 C 1.47070 * 136.05722 * 359.62943 * 10 8 7 12 12 C 1.53754 * 87.89084 * 152.96215 * 11 10 8 13 13 N 1.46497 * 114.26479 * 139.79059 * 12 11 10 14 14 C 1.34774 * 120.00066 * 111.48101 * 13 12 11 15 15 O 1.21283 * 119.99776 * 359.97438 * 14 13 12 16 16 C 1.50701 * 120.00245 * 179.97438 * 14 13 12 17 17 S 1.81004 * 109.47130 * 179.97438 * 16 14 13 18 18 C 1.76200 * 99.99945 * 180.02562 * 17 16 14 19 19 H 1.08002 * 120.00046 * 359.97438 * 18 17 16 20 20 C 1.38795 * 120.00022 * 180.02562 * 18 17 16 21 21 N 1.31629 * 120.00037 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00051 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47205 * 59.99981 * 22 20 18 24 24 H 1.48502 * 109.47252 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47244 * 299.99669 * 22 20 18 26 26 C 1.47071 * 136.06212 * 180.02562 * 10 8 7 27 27 H 1.08997 * 109.47697 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46640 * 299.99937 * 1 2 3 29 29 H 1.09005 * 109.47316 * 59.99559 * 1 2 3 30 30 H 1.09003 * 109.47079 * 239.99907 * 2 1 3 31 31 H 1.08997 * 109.47426 * 120.00786 * 2 1 3 32 32 H 1.07998 * 126.82471 * 180.02562 * 6 5 4 33 33 H 1.09001 * 113.46743 * 267.69676 * 11 10 8 34 34 H 1.09000 * 113.46394 * 38.13062 * 11 10 8 35 35 H 1.08997 * 114.39445 * 272.67781 * 12 11 10 36 36 H 0.97003 * 120.00206 * 291.47405 * 13 12 11 37 37 H 1.08989 * 109.47126 * 299.99542 * 16 14 13 38 38 H 1.09001 * 109.47065 * 60.00230 * 16 14 13 39 39 H 0.97007 * 120.00379 * 180.02562 * 21 20 18 40 40 H 1.09000 * 113.46129 * 321.85938 * 26 10 8 41 41 H 1.08998 * 113.47105 * 92.30050 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2957 2.1639 -1.0337 5 8 2.6846 3.2624 -0.7208 6 6 2.7470 3.4404 0.6008 7 6 2.3298 2.2619 1.1696 8 6 2.2090 1.9237 2.5991 9 8 1.8184 0.8213 2.9324 10 7 2.5312 2.8363 3.5371 11 6 3.0282 4.2205 3.5412 12 6 2.3435 4.4021 4.9058 13 7 3.1240 5.1784 5.8724 14 6 2.7041 6.4022 6.2499 15 8 1.6804 6.8610 5.7889 16 6 3.5066 7.2006 7.2447 17 16 2.6897 8.7879 7.5438 18 6 3.8091 9.4936 8.7073 19 1 4.6853 8.9429 9.0161 20 6 3.5642 10.7567 9.2278 21 7 2.4960 11.4277 8.8518 22 14 4.7505 11.5046 10.4618 23 1 6.0957 11.6255 9.8446 24 1 4.2665 12.8507 10.8606 25 1 4.8325 10.6324 11.6608 26 6 2.5474 2.8839 5.0069 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.0626 4.3336 1.1195 33 1 4.1149 4.2913 3.5880 34 1 2.5986 4.8382 2.7526 35 1 1.2996 4.7103 4.8482 36 1 3.9429 4.8117 6.2409 37 1 3.5794 6.6470 8.1807 38 1 4.5065 7.3762 6.8476 39 1 2.3249 12.3107 9.2152 40 1 1.7079 2.3629 5.4673 41 1 3.5074 2.6027 5.4399 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688593089.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:37 Heat of formation + Delta-G solvation = 4.027274 kcal Electronic energy + Delta-G solvation = -25625.713681 eV Core-core repulsion = 21635.898308 eV Total energy + Delta-G solvation = -3989.815373 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -46.04906 -41.79640 -40.30133 -38.91105 -36.27507 -35.01524 -34.54178 -33.55328 -32.31869 -31.28293 -29.51398 -27.62073 -27.26424 -25.86224 -25.14603 -23.02523 -21.96424 -21.78209 -20.71454 -19.77553 -18.87206 -18.72984 -18.02099 -17.99984 -17.48981 -17.16900 -16.83926 -16.39954 -16.25501 -15.76214 -15.54863 -15.32266 -14.92967 -14.70078 -14.56566 -14.34253 -14.07737 -13.77131 -13.69486 -13.48090 -13.23246 -13.12659 -12.83979 -12.79392 -12.60620 -12.57434 -12.21865 -11.99625 -11.72001 -11.39769 -11.09413 -11.09322 -10.92481 -10.90146 -10.21789 -10.14663 -9.92109 -8.61123 -8.31125 -6.07928 -0.05092 0.64279 1.22015 1.38051 1.46258 1.52429 1.60592 1.63136 1.96324 2.06014 2.30475 2.40361 2.85176 3.03356 3.14998 3.22074 3.36600 3.43908 3.71716 3.75757 3.97120 4.08830 4.15606 4.21429 4.26389 4.30148 4.39874 4.43070 4.52879 4.60819 4.62435 4.65954 4.80400 4.90724 4.92370 5.06672 5.20631 5.43484 5.46040 6.23298 6.38488 6.53597 6.85400 7.10665 7.10954 7.26463 8.77394 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.029475 B = 0.001800 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.737595 B =15555.414353 C =15940.382982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.048 4.048 3 C 0.062 3.938 4 N -0.376 5.376 5 O 0.096 5.904 6 C 0.025 3.975 7 C -0.274 4.274 8 C 0.628 3.372 9 O -0.562 6.562 10 N -0.640 5.640 11 C 0.077 3.923 12 C 0.115 3.885 13 N -0.695 5.695 14 C 0.542 3.458 15 O -0.560 6.560 16 C -0.131 4.131 17 S -0.153 6.153 18 C -0.545 4.545 19 H 0.084 0.916 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 0.995 3.005 23 H -0.262 1.262 24 H -0.282 1.282 25 H -0.263 1.263 26 C 0.105 3.895 27 H 0.084 0.916 28 H 0.044 0.956 29 H 0.054 0.946 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.262 0.738 33 H 0.129 0.871 34 H 0.099 0.901 35 H 0.112 0.888 36 H 0.424 0.576 37 H 0.111 0.889 38 H 0.116 0.884 39 H 0.270 0.730 40 H 0.083 0.917 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.333 -21.153 -14.225 26.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.086 4.086 3 C -0.101 4.101 4 N -0.084 5.084 5 O 0.038 5.962 6 C -0.057 4.057 7 C -0.282 4.282 8 C 0.419 3.581 9 O -0.442 6.442 10 N -0.375 5.375 11 C -0.046 4.046 12 C 0.008 3.992 13 N -0.349 5.349 14 C 0.328 3.672 15 O -0.437 6.437 16 C -0.282 4.282 17 S 0.074 5.926 18 C -0.693 4.693 19 H 0.103 0.897 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.817 3.183 23 H -0.186 1.186 24 H -0.208 1.208 25 H -0.188 1.188 26 C -0.018 4.018 27 H 0.103 0.897 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.113 0.887 31 H 0.109 0.891 32 H 0.278 0.722 33 H 0.147 0.853 34 H 0.117 0.883 35 H 0.130 0.870 36 H 0.262 0.738 37 H 0.130 0.870 38 H 0.134 0.866 39 H 0.079 0.921 40 H 0.101 0.899 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.225 -21.149 -16.291 26.890 hybrid contribution 1.736 0.043 2.234 2.830 sum 4.961 -21.107 -14.057 25.840 Atomic orbital electron populations 1.21629 0.93092 1.03428 1.01399 1.20091 0.97168 0.86781 1.04544 1.25194 0.98876 0.99572 0.86458 1.73696 1.17491 0.93176 1.24014 1.84580 1.61565 1.26140 1.23880 1.27328 0.95152 1.00068 0.83136 1.22167 1.14929 0.96541 0.94519 1.16260 0.76743 0.82379 0.82705 1.90793 1.48865 1.22461 1.82088 1.48967 1.64938 1.15577 1.07999 1.24088 1.02351 0.79840 0.98307 1.22587 0.97445 0.90415 0.88757 1.45409 1.28378 1.15961 1.45198 1.20025 0.84532 0.81719 0.80888 1.90723 1.26213 1.70408 1.56337 1.23387 1.03482 0.99582 1.01786 1.85595 1.36268 1.13352 1.57357 1.23184 1.11578 1.05358 1.29160 0.89742 1.26081 0.97662 0.96578 0.98815 1.70172 1.27650 1.13230 1.43723 0.85054 0.78102 0.77153 0.78017 1.18613 1.20754 1.18768 1.23494 1.04835 0.93938 0.79524 0.89723 0.93726 0.92641 0.88703 0.89058 0.72220 0.85324 0.88253 0.87044 0.73772 0.87042 0.86598 0.92113 0.89854 0.85969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.89 71.98 0.71 -1.49 16 2 C -0.05 -0.83 6.19 29.84 0.18 -0.64 16 3 C 0.06 1.24 6.84 45.16 0.31 1.55 16 4 N -0.38 -7.73 12.01 -44.78 -0.54 -8.27 16 5 O 0.10 1.59 11.06 76.97 0.85 2.45 16 6 C 0.03 0.30 11.48 67.61 0.78 1.08 16 7 C -0.27 -4.96 6.46 -18.75 -0.12 -5.08 16 8 C 0.63 12.90 8.06 86.65 0.70 13.60 16 9 O -0.56 -15.34 16.47 -4.07 -0.07 -15.41 16 10 N -0.64 -9.32 3.69 -861.76 -3.18 -12.50 16 11 C 0.08 0.71 7.09 83.26 0.59 1.30 16 12 C 0.12 1.65 4.62 45.56 0.21 1.86 16 13 N -0.69 -11.18 5.39 -441.49 -2.38 -13.56 16 14 C 0.54 15.89 7.85 87.66 0.69 16.58 16 15 O -0.56 -22.06 15.45 -3.04 -0.05 -22.11 16 16 C -0.13 -4.39 6.16 71.24 0.44 -3.95 16 17 S -0.15 -7.87 20.57 -56.49 -1.16 -9.03 16 18 C -0.54 -29.40 9.50 67.95 0.65 -28.75 16 19 H 0.08 4.17 7.80 -2.91 -0.02 4.15 16 20 C 0.01 0.74 5.49 84.86 0.47 1.20 16 21 N -0.91 -54.21 13.22 21.65 0.29 -53.93 16 22 Si 0.99 41.83 29.55 68.60 2.03 43.86 16 23 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 24 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 25 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 26 C 0.10 1.24 8.38 83.18 0.70 1.94 16 27 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.09 1.73 7.11 -2.39 -0.02 1.72 16 32 H 0.26 0.87 5.54 -2.91 -0.02 0.85 16 33 H 0.13 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.10 0.71 6.28 -2.39 -0.01 0.69 16 35 H 0.11 2.26 7.45 -2.39 -0.02 2.24 16 36 H 0.42 3.61 8.76 -92.71 -0.81 2.80 16 37 H 0.11 3.32 8.14 -2.40 -0.02 3.30 16 38 H 0.12 3.34 8.14 -2.39 -0.02 3.32 16 39 H 0.27 15.01 8.31 -92.70 -0.77 14.24 16 40 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.12 0.79 8.13 -2.39 -0.02 0.77 16 Total: -1.00 -82.38 371.29 2.36 -80.01 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: 0.27 Total: 9.29 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: 6.30 Total: -0.80 kcal Atomic # 7 Polarization: -82.45 SS G_CDS: -5.81 Total: -88.25 kcal Atomic # 8 Polarization: -35.81 SS G_CDS: 0.74 Total: -35.07 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Atomic # 16 Polarization: -7.87 SS G_CDS: -1.16 Total: -9.03 kcal Total: -82.38 2.36 -80.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688593089.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.039 kcal (2) G-P(sol) polarization free energy of solvation -82.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds