Wall clock time and date at job start Tue Mar 31 2020 22:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41267 * 126.70170 * 2 1 4 4 C 1.36831 * 103.84491 * 180.12392 * 3 2 1 5 5 C 1.47511 * 126.94202 * 179.90394 * 4 3 2 6 6 O 1.21583 * 120.00122 * 359.71220 * 5 4 3 7 7 N 1.34777 * 119.99935 * 179.71344 * 5 4 3 8 8 C 1.46498 * 119.99828 * 180.27949 * 7 5 4 9 9 C 1.52996 * 109.47059 * 179.72339 * 8 7 5 10 10 C 1.53947 * 113.74226 * 273.73938 * 9 8 7 11 11 N 1.47815 * 86.03999 * 222.08265 * 10 9 8 12 12 C 1.34769 * 134.45966 * 204.64413 * 11 10 9 13 13 O 1.21277 * 120.00217 * 179.86849 * 12 11 10 14 14 C 1.50704 * 119.99794 * 359.86157 * 12 11 10 15 15 S 1.81004 * 109.46896 * 180.02562 * 14 12 11 16 16 C 1.76206 * 100.00018 * 180.02562 * 15 14 12 17 17 H 1.08000 * 119.99631 * 359.97438 * 16 15 14 18 18 C 1.38794 * 119.99844 * 180.02562 * 16 15 14 19 19 N 1.31625 * 120.00207 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99607 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46992 * 89.99999 * 20 18 16 22 22 H 1.48494 * 109.46973 * 209.99548 * 20 18 16 23 23 H 1.48499 * 109.47126 * 329.99992 * 20 18 16 24 24 C 1.47583 * 91.04788 * 24.54761 * 11 10 9 25 25 O 1.34634 * 106.11145 * 359.64730 * 4 3 2 26 26 N 1.20891 * 111.47364 * 0.23484 * 25 4 3 27 27 H 1.09001 * 109.47204 * 270.25494 * 1 2 3 28 28 H 1.08995 * 109.47414 * 30.25647 * 1 2 3 29 29 H 1.09006 * 109.46752 * 150.25739 * 1 2 3 30 30 H 1.07997 * 128.08006 * 0.02562 * 3 2 1 31 31 H 0.97001 * 119.99727 * 359.97438 * 7 5 4 32 32 H 1.09004 * 109.46963 * 299.72135 * 8 7 5 33 33 H 1.08994 * 109.47567 * 59.72287 * 8 7 5 34 34 H 1.08994 * 112.94815 * 45.32919 * 9 8 7 35 35 H 1.09005 * 113.76764 * 336.35080 * 10 9 8 36 36 H 1.08998 * 113.77347 * 107.74000 * 10 9 8 37 37 H 1.08991 * 109.47461 * 300.00052 * 14 12 11 38 38 H 1.09001 * 109.46876 * 60.00962 * 14 12 11 39 39 H 0.97006 * 119.99985 * 180.02562 * 19 18 16 40 40 H 1.08997 * 113.77139 * 221.14999 * 24 11 10 41 41 H 1.08999 * 113.76764 * 89.75563 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3513 1.1326 0.0000 4 6 3.6121 0.6011 -0.0029 5 6 4.8870 1.3432 -0.0061 6 8 4.8828 2.5590 -0.0117 7 7 6.0566 0.6734 -0.0029 8 6 7.3227 1.4104 0.0001 9 6 8.4890 0.4203 0.0104 10 6 8.8951 -0.0445 1.4207 11 7 10.2906 0.1100 0.9585 12 6 11.4705 -0.4304 1.3215 13 8 12.4880 -0.1082 0.7455 14 6 11.5257 -1.4351 2.4434 15 16 13.2371 -1.9702 2.6905 16 6 13.0137 -3.1069 4.0182 17 1 12.0264 -3.2805 4.4200 18 6 14.1068 -3.7782 4.5483 19 7 15.3101 -3.5662 4.0589 20 14 13.8699 -4.9827 5.9564 21 1 13.6159 -6.3398 5.4094 22 1 15.0941 -5.0089 6.7965 23 1 12.7116 -4.5571 6.7824 24 6 9.8726 1.0915 -0.0614 25 8 3.4540 -0.7359 0.0036 26 7 2.2848 -1.0432 0.0052 27 1 -0.3634 0.0046 1.0277 28 1 -0.3634 0.8876 -0.5178 29 1 -0.3633 -0.8924 -0.5099 30 1 2.0678 2.1747 0.0004 31 1 6.0599 -0.2966 0.0019 32 1 7.3826 2.0332 -0.8925 33 1 7.3738 2.0412 0.8874 34 1 8.3599 -0.3959 -0.7004 35 1 8.6142 0.6520 2.2107 36 1 8.6156 -1.0747 1.6413 37 1 11.1527 -0.9775 3.3596 38 1 10.9083 -2.2969 2.1901 39 1 16.0740 -4.0357 4.4292 40 1 10.3722 0.9667 -1.0220 41 1 9.8796 2.1225 0.2923 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688649184.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:25 Heat of formation + Delta-G solvation = 26.983774 kcal Electronic energy + Delta-G solvation = -25079.896549 eV Core-core repulsion = 21091.076644 eV Total energy + Delta-G solvation = -3988.819905 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.53254 -40.61832 -39.81000 -37.66649 -35.62338 -35.04289 -32.70088 -32.44905 -31.03374 -29.30001 -29.03166 -26.50481 -26.21570 -25.43551 -23.95657 -23.30156 -21.38593 -20.48537 -19.12316 -18.84511 -18.32341 -17.72244 -16.99389 -16.73002 -16.59938 -15.96063 -15.66952 -15.31818 -14.82144 -14.79534 -14.41515 -14.21244 -13.94925 -13.86413 -13.70873 -13.55203 -13.31416 -13.11524 -12.90912 -12.52507 -12.27923 -12.01992 -11.88982 -11.66290 -11.20625 -11.07789 -11.03892 -10.86281 -10.77380 -10.65116 -10.28049 -9.84180 -9.70677 -9.41391 -9.08545 -8.66506 -8.26392 -6.52867 -6.23448 -3.94583 0.26880 1.50298 2.03948 2.44922 2.62886 2.69594 3.02032 3.21026 3.22504 3.28650 3.51782 3.51896 3.84022 3.99200 4.18291 4.29580 4.39672 4.48598 4.53359 4.70553 4.77941 4.90963 4.91674 5.05365 5.11742 5.15655 5.17765 5.21793 5.24630 5.30644 5.44941 5.47993 5.54468 5.65964 5.81714 5.91076 5.97610 6.11145 6.72123 7.37944 7.57654 7.57713 7.75253 8.33292 8.49989 9.21778 10.83976 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.015224 B = 0.001835 C = 0.001663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.759208 B =15259.225959 C =16831.196621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.010 3.990 3 C -0.149 4.149 4 C -0.085 4.085 5 C 0.607 3.393 6 O -0.510 6.510 7 N -0.712 5.712 8 C 0.128 3.872 9 C -0.140 4.140 10 C 0.106 3.894 11 N -0.652 5.652 12 C 0.556 3.444 13 O -0.514 6.514 14 C -0.145 4.145 15 S -0.061 6.061 16 C -0.536 4.536 17 H 0.073 0.927 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C 0.121 3.879 25 O 0.119 5.881 26 N -0.343 5.343 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.184 0.816 31 H 0.411 0.589 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.112 0.888 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.269 0.731 40 H 0.086 0.914 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.545 9.934 -9.567 32.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.148 4.148 3 C -0.171 4.171 4 C -0.151 4.151 5 C 0.390 3.610 6 O -0.386 6.386 7 N -0.364 5.364 8 C 0.004 3.996 9 C -0.159 4.159 10 C -0.017 4.017 11 N -0.392 5.392 12 C 0.346 3.654 13 O -0.387 6.387 14 C -0.296 4.296 15 S 0.166 5.834 16 C -0.684 4.684 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.202 1.202 22 H -0.207 1.207 23 H -0.197 1.197 24 C -0.003 4.003 25 O 0.045 5.955 26 N -0.044 5.044 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.099 0.901 30 H 0.202 0.798 31 H 0.246 0.754 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.130 0.870 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.079 0.921 40 H 0.104 0.896 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -27.819 9.852 -10.341 31.271 hybrid contribution -1.413 -0.840 1.670 2.343 sum -29.232 9.013 -8.671 31.795 Atomic orbital electron populations 1.20232 0.85127 1.04266 1.03875 1.23705 0.99535 0.88225 1.03336 1.22898 0.89939 1.01821 1.02465 1.24207 0.97303 0.84163 1.09463 1.16475 0.81052 0.86130 0.77339 1.90903 1.86091 1.11832 1.49754 1.45876 1.05328 1.11178 1.73979 1.21491 0.80214 0.94082 1.03778 1.23496 0.93907 0.99518 0.99019 1.23330 0.80029 1.02636 0.95712 1.50014 1.06603 1.44451 1.38083 1.20053 0.80846 0.81062 0.83469 1.90718 1.32366 1.61418 1.54225 1.23474 1.08296 0.99597 0.98208 1.85414 0.98253 1.53840 1.45903 1.22853 0.96697 1.28408 1.20432 0.90921 1.24991 0.94422 0.96790 0.97346 1.70016 0.98664 1.40802 1.40745 0.86164 0.77899 0.80532 0.80886 1.20240 1.20721 1.19692 1.22980 0.90068 0.93680 0.93576 1.84989 1.21558 1.22003 1.66910 1.73772 0.89201 1.24254 1.17130 0.89733 0.89585 0.90147 0.79846 0.75390 0.89932 0.90004 0.86961 0.89463 0.89597 0.89348 0.89327 0.92150 0.89580 0.89589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.28 10.47 36.01 0.38 0.10 16 2 C 0.01 0.07 7.31 -82.16 -0.60 -0.54 16 3 C -0.15 -1.00 10.92 -38.94 -0.43 -1.42 16 4 C -0.09 -0.64 7.29 -36.31 -0.26 -0.90 16 5 C 0.61 4.78 7.82 -12.48 -0.10 4.68 16 6 O -0.51 -5.54 16.91 5.29 0.09 -5.45 16 7 N -0.71 -3.97 5.55 -61.36 -0.34 -4.31 16 8 C 0.13 0.70 5.51 -4.04 -0.02 0.68 16 9 C -0.14 -0.87 3.93 -89.69 -0.35 -1.22 16 10 C 0.11 0.89 8.18 -2.84 -0.02 0.86 16 11 N -0.65 -8.62 3.61 -178.12 -0.64 -9.26 16 12 C 0.56 10.57 8.07 -10.99 -0.09 10.48 16 13 O -0.51 -11.92 16.59 5.56 0.09 -11.83 16 14 C -0.15 -2.96 5.91 36.01 0.21 -2.74 16 15 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 16 C -0.54 -15.24 9.50 30.94 0.29 -14.94 16 17 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 18 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 19 N -0.87 -26.11 13.22 55.49 0.73 -25.37 16 20 Si 0.92 21.34 29.55 -169.99 -5.02 16.31 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 C 0.12 1.12 8.41 -2.96 -0.02 1.09 16 25 O 0.12 0.95 11.04 15.57 0.17 1.12 16 26 N -0.34 -3.03 12.04 33.52 0.40 -2.63 16 27 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.18 0.89 8.06 -52.49 -0.42 0.47 16 31 H 0.41 1.58 8.30 -40.82 -0.34 1.24 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.48 7.88 -51.93 -0.41 0.07 16 34 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.09 0.63 7.92 -51.93 -0.41 0.22 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 38 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 39 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.09 0.69 8.10 -51.93 -0.42 0.26 16 LS Contribution 378.88 15.07 5.71 5.71 Total: -1.00 -37.87 378.88 -7.48 -45.35 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: -5.35 Total: -3.91 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -1.11 Total: -1.87 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: 0.15 Total: -41.57 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: 0.35 Total: -16.15 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.87 -7.48 -45.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688649184.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.332 kcal (2) G-P(sol) polarization free energy of solvation -37.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds