Wall clock time and date at job start Tue Mar 31 2020 22:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41267 * 126.70170 * 2 1 4 4 C 1.36831 * 103.84491 * 180.12392 * 3 2 1 5 5 C 1.47511 * 126.94202 * 179.90394 * 4 3 2 6 6 O 1.21583 * 120.00122 * 359.71220 * 5 4 3 7 7 N 1.34777 * 119.99935 * 179.71344 * 5 4 3 8 8 C 1.46498 * 119.99828 * 180.27949 * 7 5 4 9 9 C 1.52996 * 109.47059 * 179.72339 * 8 7 5 10 10 C 1.53947 * 113.74226 * 273.73938 * 9 8 7 11 11 N 1.47815 * 86.03999 * 222.08265 * 10 9 8 12 12 C 1.34769 * 134.45966 * 204.64413 * 11 10 9 13 13 O 1.21277 * 120.00217 * 179.86849 * 12 11 10 14 14 C 1.50704 * 119.99794 * 359.86157 * 12 11 10 15 15 S 1.81004 * 109.46896 * 180.02562 * 14 12 11 16 16 C 1.76206 * 100.00018 * 180.02562 * 15 14 12 17 17 H 1.08000 * 119.99631 * 359.97438 * 16 15 14 18 18 C 1.38794 * 119.99844 * 180.02562 * 16 15 14 19 19 N 1.31625 * 120.00207 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99607 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46992 * 89.99999 * 20 18 16 22 22 H 1.48494 * 109.46973 * 209.99548 * 20 18 16 23 23 H 1.48499 * 109.47126 * 329.99992 * 20 18 16 24 24 C 1.47583 * 91.04788 * 24.54761 * 11 10 9 25 25 O 1.34634 * 106.11145 * 359.64730 * 4 3 2 26 26 N 1.20891 * 111.47364 * 0.23484 * 25 4 3 27 27 H 1.09001 * 109.47204 * 270.25494 * 1 2 3 28 28 H 1.08995 * 109.47414 * 30.25647 * 1 2 3 29 29 H 1.09006 * 109.46752 * 150.25739 * 1 2 3 30 30 H 1.07997 * 128.08006 * 0.02562 * 3 2 1 31 31 H 0.97001 * 119.99727 * 359.97438 * 7 5 4 32 32 H 1.09004 * 109.46963 * 299.72135 * 8 7 5 33 33 H 1.08994 * 109.47567 * 59.72287 * 8 7 5 34 34 H 1.08994 * 112.94815 * 45.32919 * 9 8 7 35 35 H 1.09005 * 113.76764 * 336.35080 * 10 9 8 36 36 H 1.08998 * 113.77347 * 107.74000 * 10 9 8 37 37 H 1.08991 * 109.47461 * 300.00052 * 14 12 11 38 38 H 1.09001 * 109.46876 * 60.00962 * 14 12 11 39 39 H 0.97006 * 119.99985 * 180.02562 * 19 18 16 40 40 H 1.08997 * 113.77139 * 221.14999 * 24 11 10 41 41 H 1.08999 * 113.76764 * 89.75563 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3513 1.1326 0.0000 4 6 3.6121 0.6011 -0.0029 5 6 4.8870 1.3432 -0.0061 6 8 4.8828 2.5590 -0.0117 7 7 6.0566 0.6734 -0.0029 8 6 7.3227 1.4104 0.0001 9 6 8.4890 0.4203 0.0104 10 6 8.8951 -0.0445 1.4207 11 7 10.2906 0.1100 0.9585 12 6 11.4705 -0.4304 1.3215 13 8 12.4880 -0.1082 0.7455 14 6 11.5257 -1.4351 2.4434 15 16 13.2371 -1.9702 2.6905 16 6 13.0137 -3.1069 4.0182 17 1 12.0264 -3.2805 4.4200 18 6 14.1068 -3.7782 4.5483 19 7 15.3101 -3.5662 4.0589 20 14 13.8699 -4.9827 5.9564 21 1 13.6159 -6.3398 5.4094 22 1 15.0941 -5.0089 6.7965 23 1 12.7116 -4.5571 6.7824 24 6 9.8726 1.0915 -0.0614 25 8 3.4540 -0.7359 0.0036 26 7 2.2848 -1.0432 0.0052 27 1 -0.3634 0.0046 1.0277 28 1 -0.3634 0.8876 -0.5178 29 1 -0.3633 -0.8924 -0.5099 30 1 2.0678 2.1747 0.0004 31 1 6.0599 -0.2966 0.0019 32 1 7.3826 2.0332 -0.8925 33 1 7.3738 2.0412 0.8874 34 1 8.3599 -0.3959 -0.7004 35 1 8.6142 0.6520 2.2107 36 1 8.6156 -1.0747 1.6413 37 1 11.1527 -0.9775 3.3596 38 1 10.9083 -2.2969 2.1901 39 1 16.0740 -4.0357 4.4292 40 1 10.3722 0.9667 -1.0220 41 1 9.8796 2.1225 0.2923 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688649184.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:24 Heat of formation + Delta-G solvation = -1.050531 kcal Electronic energy + Delta-G solvation = -25081.112208 eV Core-core repulsion = 21091.076644 eV Total energy + Delta-G solvation = -3990.035564 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -46.07320 -41.46391 -40.61128 -38.93543 -36.17388 -35.63319 -34.60021 -33.29079 -32.20963 -30.24645 -29.61448 -27.75825 -27.25948 -26.94188 -24.56729 -23.85353 -22.07964 -21.14085 -20.33851 -19.52816 -19.37208 -18.88591 -18.00255 -17.61600 -17.22986 -16.92693 -16.86101 -16.65488 -16.37920 -15.75873 -15.72880 -15.02052 -14.75054 -14.62527 -14.45395 -14.21007 -14.13252 -13.99907 -13.67482 -13.66038 -13.45308 -13.22056 -12.99474 -12.89957 -12.61526 -12.42786 -12.33709 -11.90849 -11.74896 -11.52683 -11.15458 -11.11307 -10.89149 -10.85473 -10.30242 -10.21102 -9.75165 -8.69569 -8.35821 -6.14851 -0.28540 1.00286 1.21014 1.41915 1.42498 1.48861 1.54092 1.58645 1.87062 1.97794 2.13898 2.26260 2.98339 3.09045 3.18344 3.25704 3.47176 3.62155 3.74854 3.88638 4.00732 4.08496 4.17810 4.25893 4.36383 4.44004 4.50423 4.59256 4.63317 4.69072 4.75015 4.77030 4.81079 4.81708 4.92681 5.13733 5.19113 5.30493 5.40280 6.18463 6.21854 6.57107 6.86223 7.04693 7.05233 7.11068 8.73476 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.015224 B = 0.001835 C = 0.001663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.759208 B =15259.225959 C =16831.196621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.009 3.991 3 C -0.150 4.150 4 C -0.093 4.093 5 C 0.611 3.389 6 O -0.543 6.543 7 N -0.699 5.699 8 C 0.134 3.866 9 C -0.109 4.109 10 C 0.100 3.900 11 N -0.652 5.652 12 C 0.552 3.448 13 O -0.571 6.571 14 C -0.119 4.119 15 S -0.153 6.153 16 C -0.547 4.547 17 H 0.083 0.917 18 C 0.014 3.986 19 N -0.911 5.911 20 Si 0.999 3.001 21 H -0.267 1.267 22 H -0.278 1.278 23 H -0.258 1.258 24 C 0.112 3.888 25 O 0.114 5.886 26 N -0.371 5.371 27 H 0.095 0.905 28 H 0.106 0.894 29 H 0.080 0.920 30 H 0.200 0.800 31 H 0.421 0.579 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.126 0.874 35 H 0.106 0.894 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.271 0.729 40 H 0.081 0.919 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.737 9.872 -8.941 35.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.148 4.148 3 C -0.172 4.172 4 C -0.159 4.159 5 C 0.394 3.606 6 O -0.421 6.421 7 N -0.351 5.351 8 C 0.010 3.990 9 C -0.128 4.128 10 C -0.021 4.021 11 N -0.388 5.388 12 C 0.341 3.659 13 O -0.450 6.450 14 C -0.270 4.270 15 S 0.074 5.926 16 C -0.694 4.694 17 H 0.101 0.899 18 C -0.191 4.191 19 N -0.547 5.547 20 Si 0.821 3.179 21 H -0.192 1.192 22 H -0.203 1.203 23 H -0.182 1.182 24 C -0.011 4.011 25 O 0.042 5.958 26 N -0.074 5.074 27 H 0.113 0.887 28 H 0.124 0.876 29 H 0.099 0.901 30 H 0.217 0.783 31 H 0.258 0.742 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.144 0.856 35 H 0.124 0.876 36 H 0.117 0.883 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.080 0.920 40 H 0.099 0.901 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -31.074 9.786 -9.726 34.000 hybrid contribution -0.580 -0.721 1.394 1.674 sum -31.655 9.065 -8.332 33.965 Atomic orbital electron populations 1.20404 0.83035 1.05303 1.04867 1.24236 1.00897 0.87728 1.01961 1.23208 0.89666 1.02606 1.01678 1.24244 0.97556 0.84202 1.09914 1.16460 0.81490 0.85678 0.76934 1.90890 1.86534 1.13105 1.51583 1.45792 1.04794 1.11732 1.72764 1.21432 0.79520 0.93679 1.04340 1.23230 0.92391 0.99382 0.97825 1.23769 0.76591 1.04260 0.97530 1.50056 1.06516 1.43871 1.38369 1.19748 0.81953 0.81231 0.82969 1.90688 1.34833 1.63430 1.56045 1.23271 1.02963 1.00875 0.99899 1.85599 1.05593 1.54791 1.46639 1.23188 0.97361 1.28445 1.20430 0.89910 1.26139 0.93892 0.98767 1.00319 1.70185 0.99765 1.42215 1.42559 0.84945 0.78286 0.77723 0.76972 1.19216 1.20274 1.18167 1.23331 0.91317 0.94022 0.92386 1.84960 1.21423 1.22119 1.67279 1.73758 0.89706 1.25345 1.18632 0.88666 0.87550 0.90113 0.78263 0.74192 0.89310 0.89687 0.85598 0.87566 0.88285 0.87806 0.87533 0.91953 0.90064 0.87832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.41 10.47 71.24 0.75 0.33 16 2 C 0.01 0.11 7.31 43.56 0.32 0.43 16 3 C -0.15 -1.76 10.92 22.68 0.25 -1.51 16 4 C -0.09 -1.26 7.29 24.39 0.18 -1.08 16 5 C 0.61 8.48 7.82 86.69 0.68 9.16 16 6 O -0.54 -10.90 16.91 -3.98 -0.07 -10.97 16 7 N -0.70 -5.93 5.55 -466.31 -2.59 -8.52 16 8 C 0.13 1.04 5.51 86.38 0.48 1.52 16 9 C -0.11 -1.00 3.93 -10.13 -0.04 -1.04 16 10 C 0.10 1.34 8.18 86.44 0.71 2.05 16 11 N -0.65 -16.08 3.61 -835.83 -3.02 -19.10 16 12 C 0.55 20.94 8.07 87.66 0.71 21.65 16 13 O -0.57 -27.40 16.59 -3.02 -0.05 -27.45 16 14 C -0.12 -4.81 5.91 71.24 0.42 -4.38 16 15 S -0.15 -8.63 20.57 -56.49 -1.16 -9.79 16 16 C -0.55 -31.32 9.50 67.95 0.65 -30.68 16 17 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 18 C 0.01 0.78 5.49 84.86 0.47 1.24 16 19 N -0.91 -56.12 13.22 21.65 0.29 -55.83 16 20 Si 1.00 43.51 29.55 68.60 2.03 45.54 16 21 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 22 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 23 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 24 C 0.11 1.83 8.41 86.49 0.73 2.56 16 25 O 0.11 1.69 11.04 65.90 0.73 2.42 16 26 N -0.37 -6.18 12.04 -48.85 -0.59 -6.77 16 27 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 28 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 29 H 0.08 0.43 8.14 -2.38 -0.02 0.41 16 30 H 0.20 1.54 8.06 -2.91 -0.02 1.52 16 31 H 0.42 2.01 8.30 -92.71 -0.77 1.25 16 32 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 33 H 0.08 0.71 7.88 -2.39 -0.02 0.69 16 34 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.11 1.13 7.92 -2.38 -0.02 1.11 16 36 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.10 3.83 8.14 -2.40 -0.02 3.81 16 38 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 39 H 0.27 15.49 8.31 -92.70 -0.77 14.72 16 40 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.10 1.39 8.10 -2.39 -0.02 1.37 16 Total: -1.00 -86.04 378.88 2.15 -83.90 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: 0.30 Total: 6.34 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: 6.28 Total: 0.25 kcal Atomic # 7 Polarization: -84.31 SS G_CDS: -5.91 Total: -90.22 kcal Atomic # 8 Polarization: -36.62 SS G_CDS: 0.61 Total: -36.01 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: -8.63 SS G_CDS: -1.16 Total: -9.79 kcal Total: -86.04 2.15 -83.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688649184.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.846 kcal (2) G-P(sol) polarization free energy of solvation -86.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds