Wall clock time and date at job start Tue Mar 31 2020 22:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41271 * 128.07455 * 2 1 4 4 N 1.30126 * 106.58969 * 180.26673 * 3 2 1 5 5 O 1.20887 * 111.97947 * 359.59242 * 4 3 2 6 6 C 1.34635 * 111.47296 * 0.42469 * 5 4 3 7 7 C 1.47513 * 126.94778 * 179.72770 * 6 5 4 8 8 O 1.21582 * 119.99870 * 180.02562 * 7 6 5 9 9 N 1.34777 * 120.00013 * 0.02562 * 7 6 5 10 10 C 1.47064 * 136.05453 * 359.62872 * 9 7 6 11 11 C 1.53236 * 88.08096 * 207.20387 * 10 9 7 12 12 C 1.47062 * 136.05772 * 180.02562 * 9 7 6 13 13 H 1.09001 * 113.46756 * 267.62278 * 12 9 7 14 14 C 1.53002 * 113.47064 * 38.06274 * 12 9 7 15 15 N 1.46500 * 109.46838 * 285.49579 * 14 12 9 16 16 C 1.34770 * 119.99884 * 179.97438 * 15 14 12 17 17 O 1.21287 * 120.00277 * 359.97438 * 16 15 14 18 18 C 1.50699 * 120.00090 * 179.97438 * 16 15 14 19 19 S 1.81002 * 109.47121 * 179.97438 * 18 16 15 20 20 C 1.76207 * 100.00001 * 180.02562 * 19 18 16 21 21 H 1.07998 * 119.99948 * 0.02562 * 20 19 18 22 22 C 1.38804 * 119.99861 * 180.02562 * 20 19 18 23 23 N 1.31622 * 120.00232 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 119.99589 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47191 * 90.00100 * 24 22 20 26 26 H 1.48501 * 109.47100 * 209.99856 * 24 22 20 27 27 H 1.48501 * 109.47478 * 330.00062 * 24 22 20 28 28 H 1.08995 * 109.47310 * 89.97521 * 1 2 3 29 29 H 1.08997 * 109.46744 * 209.97661 * 1 2 3 30 30 H 1.09003 * 109.46829 * 329.97069 * 1 2 3 31 31 H 1.08002 * 126.70211 * 359.97438 * 3 2 1 32 32 H 1.09006 * 113.47056 * 321.93894 * 10 9 7 33 33 H 1.09004 * 113.47016 * 92.37824 * 10 9 7 34 34 H 1.09004 * 114.32861 * 220.46422 * 11 10 9 35 35 H 1.09004 * 114.19473 * 87.73277 * 11 10 9 36 36 H 1.08996 * 109.46889 * 45.49346 * 14 12 9 37 37 H 1.08992 * 109.47103 * 165.49711 * 14 12 9 38 38 H 0.96995 * 120.00011 * 0.02562 * 15 14 12 39 39 H 1.08991 * 109.47435 * 300.00211 * 18 16 15 40 40 H 1.09002 * 109.46953 * 60.00341 * 18 16 15 41 41 H 0.96998 * 120.00139 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3782 1.1121 0.0000 4 7 3.5890 0.6355 -0.0058 5 8 3.5995 -0.5733 -0.0013 6 6 2.3509 -1.0770 -0.0009 7 6 1.9697 -2.5020 -0.0017 8 8 0.7954 -2.8171 -0.0017 9 7 2.9230 -3.4547 -0.0025 10 6 4.3934 -3.4812 -0.0094 11 6 4.3142 -4.8449 -0.7038 12 6 2.9507 -4.9250 -0.0038 13 1 3.0002 -5.3592 0.9948 14 6 1.8575 -5.5543 -0.8698 15 7 0.5660 -5.4352 -0.1886 16 6 -0.5489 -5.9226 -0.7680 17 8 -0.4831 -6.4595 -1.8536 18 6 -1.8774 -5.8007 -0.0670 19 16 -3.1709 -6.5436 -1.0922 20 6 -4.5738 -6.2677 -0.0623 21 1 -4.4563 -5.7672 0.8875 22 6 -5.8298 -6.6938 -0.4716 23 7 -5.9729 -7.3043 -1.6289 24 14 -7.3170 -6.4006 0.6199 25 1 -7.9263 -5.0885 0.2846 26 1 -8.3131 -7.4797 0.3996 27 1 -6.8940 -6.4006 2.0434 28 1 -0.3634 0.0004 -1.0276 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3633 0.8898 0.5143 31 1 2.0946 2.1542 -0.0004 32 1 4.8387 -2.7044 -0.6311 33 1 4.8315 -3.5265 0.9877 34 1 5.0431 -5.5731 -0.3478 35 1 4.2558 -4.7900 -1.7908 36 1 1.8115 -5.0381 -1.8287 37 1 2.0856 -6.6073 -1.0345 38 1 0.5132 -5.0049 0.6791 39 1 -1.8313 -6.3175 0.8915 40 1 -2.1055 -4.7477 0.0985 41 1 -6.8506 -7.6017 -1.9151 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689508596.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:05 Heat of formation + Delta-G solvation = 35.833025 kcal Electronic energy + Delta-G solvation = -26676.102009 eV Core-core repulsion = 22687.665837 eV Total energy + Delta-G solvation = -3988.436173 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.37731 -41.02968 -38.80938 -38.31632 -35.08338 -34.27393 -32.77257 -32.36338 -30.71985 -29.86465 -28.44353 -27.59140 -25.41097 -24.58188 -23.39443 -23.01743 -21.65991 -20.25929 -19.93384 -18.38269 -18.14170 -17.73491 -16.79784 -16.55819 -16.18367 -15.93726 -15.12960 -15.07177 -14.74587 -14.61635 -14.39111 -13.93900 -13.86807 -13.59645 -13.48448 -13.13834 -13.07155 -12.90425 -12.78027 -12.53562 -12.34995 -12.00212 -11.62995 -11.60114 -11.22125 -11.01296 -10.95493 -10.75569 -10.69726 -10.43362 -9.82706 -9.73869 -9.24387 -9.21180 -9.00509 -8.69227 -8.14029 -6.41036 -6.15145 -3.84298 0.44283 1.69247 2.00562 2.58919 2.68130 3.14310 3.26229 3.28726 3.32422 3.37985 3.70823 3.78689 3.94230 4.00644 4.27247 4.30560 4.41188 4.58545 4.65412 4.70521 4.79831 4.88583 4.97339 5.18554 5.19865 5.28327 5.31964 5.37308 5.39368 5.54838 5.56104 5.62819 5.79444 5.91696 5.96788 6.05372 6.30544 6.76621 7.12489 7.48033 7.66294 7.74047 7.90530 8.42229 8.79250 9.30111 10.92380 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013743 B = 0.002750 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.868038 B =10177.758717 C =11836.066830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.114 4.114 3 C -0.015 4.015 4 N -0.346 5.346 5 O 0.115 5.885 6 C -0.089 4.089 7 C 0.629 3.371 8 O -0.486 6.486 9 N -0.638 5.638 10 C 0.099 3.901 11 C -0.144 4.144 12 C 0.126 3.874 13 H 0.106 0.894 14 C 0.119 3.881 15 N -0.724 5.724 16 C 0.537 3.463 17 O -0.526 6.526 18 C -0.149 4.149 19 S -0.063 6.063 20 C -0.532 4.532 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.869 5.869 24 Si 0.918 3.082 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.199 0.801 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.400 0.600 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.669 13.007 6.316 28.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.119 4.119 3 C -0.192 4.192 4 N -0.045 5.045 5 O 0.042 5.958 6 C -0.155 4.155 7 C 0.416 3.584 8 O -0.359 6.359 9 N -0.375 5.375 10 C -0.024 4.024 11 C -0.182 4.182 12 C 0.023 3.977 13 H 0.124 0.876 14 C -0.006 4.006 15 N -0.379 5.379 16 C 0.323 3.677 17 O -0.402 6.402 18 C -0.300 4.300 19 S 0.164 5.836 20 C -0.681 4.681 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.504 5.504 24 Si 0.744 3.256 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 H 0.102 0.898 29 H 0.111 0.889 30 H 0.094 0.906 31 H 0.216 0.784 32 H 0.105 0.895 33 H 0.110 0.890 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.235 0.765 39 H 0.104 0.896 40 H 0.109 0.891 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 25.038 12.595 4.374 28.366 hybrid contribution -1.733 1.237 2.424 3.226 sum 23.304 13.831 6.797 27.939 Atomic orbital electron populations 1.20387 0.85922 1.04431 1.03925 1.21726 0.99256 0.90163 1.00746 1.25030 0.87691 1.02207 1.04287 1.73747 1.23172 0.91317 1.16267 1.84954 1.28255 1.15436 1.67200 1.23910 0.84605 0.95831 1.11148 1.15937 0.84441 0.80640 0.77377 1.90944 1.16074 1.79684 1.49213 1.49619 1.07749 1.07155 1.72982 1.23036 0.79834 0.98068 1.01479 1.23414 0.95841 0.97243 1.01745 1.23113 0.95236 0.79051 1.00286 0.87590 1.21451 0.82359 1.00998 0.95786 1.45815 1.06407 1.61959 1.23705 1.20197 0.84929 0.77004 0.85587 1.90682 1.86178 1.42659 1.20637 1.23483 0.96785 1.05619 1.04095 1.85336 0.96691 1.75360 1.26214 1.22879 0.93677 1.44496 1.07022 0.91000 1.24984 0.98473 0.94638 0.95544 1.70021 1.24084 1.36835 1.19481 0.86180 0.81132 0.78039 0.80211 1.20311 1.20807 1.19720 0.89760 0.88877 0.90619 0.78413 0.89539 0.88969 0.88209 0.87928 0.91233 0.90115 0.76513 0.89578 0.89133 0.92277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.82 9.96 36.01 0.36 -0.46 16 2 C -0.11 -1.12 6.37 -103.98 -0.66 -1.78 16 3 C -0.01 -0.12 12.14 -17.12 -0.21 -0.33 16 4 N -0.35 -3.51 12.04 30.46 0.37 -3.14 16 5 O 0.11 1.13 9.99 15.57 0.16 1.29 16 6 C -0.09 -0.94 7.25 -36.31 -0.26 -1.20 16 7 C 0.63 7.16 7.97 -12.48 -0.10 7.06 16 8 O -0.49 -6.95 13.00 5.29 0.07 -6.89 16 9 N -0.64 -5.44 3.57 -178.88 -0.64 -6.08 16 10 C 0.10 0.48 7.85 -8.64 -0.07 0.41 16 11 C -0.14 -0.60 8.01 -26.36 -0.21 -0.81 16 12 C 0.13 0.91 4.08 -72.41 -0.30 0.62 16 13 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 14 C 0.12 1.38 5.35 -4.04 -0.02 1.36 16 15 N -0.72 -10.73 4.17 -60.30 -0.25 -10.98 16 16 C 0.54 10.81 7.85 -10.99 -0.09 10.72 16 17 O -0.53 -12.55 15.86 5.55 0.09 -12.46 16 18 C -0.15 -3.25 6.16 36.00 0.22 -3.03 16 19 S -0.06 -1.77 20.57 -107.50 -2.21 -3.98 16 20 C -0.53 -15.64 9.50 30.94 0.29 -15.34 16 21 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.74 13.22 55.49 0.73 -26.01 16 24 Si 0.92 21.88 29.55 -169.99 -5.02 16.85 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.09 1.03 6.73 -51.93 -0.35 0.68 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.20 1.02 8.06 -52.49 -0.42 0.60 16 32 H 0.09 0.41 7.59 -51.93 -0.39 0.01 16 33 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 35 H 0.10 0.48 8.12 -51.93 -0.42 0.05 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.40 5.35 7.35 -40.82 -0.30 5.05 16 39 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 40 H 0.09 1.91 8.14 -51.91 -0.42 1.49 16 41 H 0.27 7.63 8.31 -40.82 -0.34 7.30 16 LS Contribution 368.51 15.07 5.55 5.55 Total: -1.00 -37.92 368.51 -7.53 -45.46 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -5.24 Total: 1.18 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -1.14 Total: -0.79 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: 0.21 Total: -46.21 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: 0.31 Total: -18.06 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: -1.77 SS G_CDS: -2.21 Total: -3.98 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.92 -7.53 -45.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689508596.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.290 kcal (2) G-P(sol) polarization free energy of solvation -37.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds