Wall clock time and date at job start Tue Mar 31 2020 22:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41271 * 128.07455 * 2 1 4 4 N 1.30126 * 106.58969 * 180.26673 * 3 2 1 5 5 O 1.20887 * 111.97947 * 359.59242 * 4 3 2 6 6 C 1.34635 * 111.47296 * 0.42469 * 5 4 3 7 7 C 1.47513 * 126.94778 * 179.72770 * 6 5 4 8 8 O 1.21582 * 119.99870 * 180.02562 * 7 6 5 9 9 N 1.34777 * 120.00013 * 0.02562 * 7 6 5 10 10 C 1.47064 * 136.05453 * 359.62872 * 9 7 6 11 11 C 1.53236 * 88.08096 * 207.20387 * 10 9 7 12 12 C 1.47062 * 136.05772 * 180.02562 * 9 7 6 13 13 H 1.09001 * 113.46756 * 267.62278 * 12 9 7 14 14 C 1.53002 * 113.47064 * 38.06274 * 12 9 7 15 15 N 1.46500 * 109.46838 * 285.49579 * 14 12 9 16 16 C 1.34770 * 119.99884 * 179.97438 * 15 14 12 17 17 O 1.21287 * 120.00277 * 359.97438 * 16 15 14 18 18 C 1.50699 * 120.00090 * 179.97438 * 16 15 14 19 19 S 1.81002 * 109.47121 * 179.97438 * 18 16 15 20 20 C 1.76207 * 100.00001 * 180.02562 * 19 18 16 21 21 H 1.07998 * 119.99948 * 0.02562 * 20 19 18 22 22 C 1.38804 * 119.99861 * 180.02562 * 20 19 18 23 23 N 1.31622 * 120.00232 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 119.99589 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47191 * 90.00100 * 24 22 20 26 26 H 1.48501 * 109.47100 * 209.99856 * 24 22 20 27 27 H 1.48501 * 109.47478 * 330.00062 * 24 22 20 28 28 H 1.08995 * 109.47310 * 89.97521 * 1 2 3 29 29 H 1.08997 * 109.46744 * 209.97661 * 1 2 3 30 30 H 1.09003 * 109.46829 * 329.97069 * 1 2 3 31 31 H 1.08002 * 126.70211 * 359.97438 * 3 2 1 32 32 H 1.09006 * 113.47056 * 321.93894 * 10 9 7 33 33 H 1.09004 * 113.47016 * 92.37824 * 10 9 7 34 34 H 1.09004 * 114.32861 * 220.46422 * 11 10 9 35 35 H 1.09004 * 114.19473 * 87.73277 * 11 10 9 36 36 H 1.08996 * 109.46889 * 45.49346 * 14 12 9 37 37 H 1.08992 * 109.47103 * 165.49711 * 14 12 9 38 38 H 0.96995 * 120.00011 * 0.02562 * 15 14 12 39 39 H 1.08991 * 109.47435 * 300.00211 * 18 16 15 40 40 H 1.09002 * 109.46953 * 60.00341 * 18 16 15 41 41 H 0.96998 * 120.00139 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3782 1.1121 0.0000 4 7 3.5890 0.6355 -0.0058 5 8 3.5995 -0.5733 -0.0013 6 6 2.3509 -1.0770 -0.0009 7 6 1.9697 -2.5020 -0.0017 8 8 0.7954 -2.8171 -0.0017 9 7 2.9230 -3.4547 -0.0025 10 6 4.3934 -3.4812 -0.0094 11 6 4.3142 -4.8449 -0.7038 12 6 2.9507 -4.9250 -0.0038 13 1 3.0002 -5.3592 0.9948 14 6 1.8575 -5.5543 -0.8698 15 7 0.5660 -5.4352 -0.1886 16 6 -0.5489 -5.9226 -0.7680 17 8 -0.4831 -6.4595 -1.8536 18 6 -1.8774 -5.8007 -0.0670 19 16 -3.1709 -6.5436 -1.0922 20 6 -4.5738 -6.2677 -0.0623 21 1 -4.4563 -5.7672 0.8875 22 6 -5.8298 -6.6938 -0.4716 23 7 -5.9729 -7.3043 -1.6289 24 14 -7.3170 -6.4006 0.6199 25 1 -7.9263 -5.0885 0.2846 26 1 -8.3131 -7.4797 0.3996 27 1 -6.8940 -6.4006 2.0434 28 1 -0.3634 0.0004 -1.0276 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3633 0.8898 0.5143 31 1 2.0946 2.1542 -0.0004 32 1 4.8387 -2.7044 -0.6311 33 1 4.8315 -3.5265 0.9877 34 1 5.0431 -5.5731 -0.3478 35 1 4.2558 -4.7900 -1.7908 36 1 1.8115 -5.0381 -1.8287 37 1 2.0856 -6.6073 -1.0345 38 1 0.5132 -5.0049 0.6791 39 1 -1.8313 -6.3175 0.8915 40 1 -2.1055 -4.7477 0.0985 41 1 -6.8506 -7.6017 -1.9151 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689508596.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:04 Heat of formation + Delta-G solvation = 8.290671 kcal Electronic energy + Delta-G solvation = -26677.296335 eV Core-core repulsion = 22687.665837 eV Total energy + Delta-G solvation = -3989.630499 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -46.09575 -41.74190 -40.31580 -39.12882 -35.80377 -35.60606 -34.58989 -33.54790 -31.73068 -31.04754 -29.15037 -28.72863 -27.62846 -25.30288 -24.17554 -23.65193 -22.34938 -21.71164 -20.66336 -19.88185 -18.99180 -18.84673 -17.84169 -17.59175 -17.46916 -16.88594 -16.82188 -16.48252 -16.16555 -15.74945 -15.39782 -15.13112 -14.83906 -14.59727 -14.46755 -14.30080 -14.21731 -13.91277 -13.73740 -13.53557 -13.27922 -13.17013 -12.98117 -12.88153 -12.63394 -12.43663 -12.36027 -11.90475 -11.69169 -11.46553 -11.25184 -11.14654 -10.88128 -10.61025 -10.29225 -10.04685 -9.85462 -8.67050 -8.34810 -6.13058 -0.33290 1.00180 1.24616 1.31143 1.42122 1.46836 1.57907 1.66121 1.83313 1.93458 2.26764 2.37365 2.98832 3.11742 3.24008 3.33926 3.47291 3.61613 3.71974 3.92414 3.97807 4.03424 4.13876 4.17989 4.27980 4.38383 4.44840 4.50218 4.66994 4.69485 4.75304 4.76524 4.85176 4.93377 5.04200 5.22099 5.30823 5.40971 5.47659 6.19600 6.43820 6.50478 6.72131 6.99840 7.05889 7.27742 8.74694 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013743 B = 0.002750 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.868038 B =10177.758717 C =11836.066830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.125 4.125 3 C -0.003 4.003 4 N -0.363 5.363 5 O 0.115 5.885 6 C -0.100 4.100 7 C 0.621 3.379 8 O -0.529 6.529 9 N -0.641 5.641 10 C 0.098 3.902 11 C -0.125 4.125 12 C 0.125 3.875 13 H 0.133 0.867 14 C 0.115 3.885 15 N -0.699 5.699 16 C 0.536 3.464 17 O -0.571 6.571 18 C -0.126 4.126 19 S -0.147 6.147 20 C -0.547 4.547 21 H 0.079 0.921 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 1.000 3.000 25 H -0.268 1.268 26 H -0.275 1.275 27 H -0.259 1.259 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.101 0.899 31 H 0.231 0.769 32 H 0.088 0.912 33 H 0.119 0.881 34 H 0.136 0.864 35 H 0.096 0.904 36 H 0.047 0.953 37 H 0.088 0.912 38 H 0.410 0.590 39 H 0.106 0.894 40 H 0.097 0.903 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.300 14.144 8.513 31.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C -0.181 4.181 4 N -0.063 5.063 5 O 0.044 5.956 6 C -0.165 4.165 7 C 0.409 3.591 8 O -0.406 6.406 9 N -0.377 5.377 10 C -0.023 4.023 11 C -0.163 4.163 12 C 0.023 3.977 13 H 0.151 0.849 14 C -0.009 4.009 15 N -0.352 5.352 16 C 0.321 3.679 17 O -0.450 6.450 18 C -0.277 4.277 19 S 0.080 5.920 20 C -0.695 4.695 21 H 0.098 0.902 22 C -0.191 4.191 23 N -0.547 5.547 24 Si 0.822 3.178 25 H -0.193 1.193 26 H -0.200 1.200 27 H -0.182 1.182 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.119 0.881 31 H 0.248 0.752 32 H 0.107 0.893 33 H 0.137 0.863 34 H 0.154 0.846 35 H 0.115 0.885 36 H 0.065 0.935 37 H 0.106 0.894 38 H 0.246 0.754 39 H 0.124 0.876 40 H 0.115 0.885 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 26.769 13.736 6.602 30.804 hybrid contribution -2.073 0.923 1.731 2.855 sum 24.696 14.660 8.333 29.904 Atomic orbital electron populations 1.20348 0.85779 1.04570 1.03614 1.21953 0.99590 0.90666 1.00777 1.25513 0.86700 1.03318 1.02526 1.73726 1.23974 0.91440 1.17194 1.84939 1.27788 1.15436 1.67478 1.23941 0.85148 0.95850 1.11587 1.16127 0.84423 0.81342 0.77257 1.90908 1.17755 1.80404 1.51565 1.49855 1.09206 1.07321 1.71283 1.23335 0.77380 0.98426 1.03161 1.23423 0.94098 0.97522 1.01263 1.23403 0.94990 0.78039 1.01244 0.84917 1.21699 0.81810 1.01777 0.95655 1.45639 1.06284 1.59669 1.23648 1.19931 0.85614 0.77275 0.85034 1.90663 1.86765 1.45149 1.22427 1.23312 0.95573 1.05302 1.03494 1.85472 1.00017 1.76845 1.29675 1.23192 0.94137 1.44944 1.07235 0.90242 1.26146 1.02025 0.93865 0.97105 1.70181 1.25164 1.37822 1.21581 0.84934 0.76318 0.78268 0.78323 1.19283 1.20011 1.18246 0.90289 0.91083 0.88079 0.75216 0.89334 0.86317 0.84641 0.88532 0.93502 0.89353 0.75362 0.87601 0.88511 0.91928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.57 9.96 71.24 0.71 -0.86 16 2 C -0.13 -2.38 6.37 -19.45 -0.12 -2.50 16 3 C 0.00 -0.05 12.14 85.69 1.04 0.99 16 4 N -0.36 -6.83 12.04 -58.55 -0.71 -7.54 16 5 O 0.11 2.14 9.99 65.89 0.66 2.80 16 6 C -0.10 -2.05 7.25 24.39 0.18 -1.88 16 7 C 0.62 14.01 7.97 86.69 0.69 14.70 16 8 O -0.53 -15.51 13.00 -3.97 -0.05 -15.56 16 9 N -0.64 -9.93 3.57 -838.11 -2.99 -12.92 16 10 C 0.10 0.66 7.85 83.09 0.65 1.31 16 11 C -0.13 -0.63 8.01 30.83 0.25 -0.39 16 12 C 0.13 1.52 4.08 41.78 0.17 1.69 16 13 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 14 C 0.11 2.57 5.35 86.38 0.46 3.04 16 15 N -0.70 -20.56 4.17 -463.07 -1.93 -22.49 16 16 C 0.54 22.03 7.85 87.66 0.69 22.71 16 17 O -0.57 -28.25 15.86 -3.05 -0.05 -28.29 16 18 C -0.13 -5.57 6.16 71.24 0.44 -5.13 16 19 S -0.15 -8.63 20.57 -56.49 -1.16 -9.79 16 20 C -0.55 -32.63 9.50 67.96 0.65 -31.98 16 21 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 22 C 0.01 0.78 5.49 84.86 0.47 1.24 16 23 N -0.91 -57.31 13.22 21.65 0.29 -57.03 16 24 Si 1.00 44.81 29.55 68.60 2.03 46.83 16 25 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 26 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 27 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 28 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.07 1.63 6.73 -2.39 -0.02 1.61 16 30 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.23 1.72 8.06 -2.91 -0.02 1.70 16 32 H 0.09 0.61 7.59 -2.38 -0.02 0.60 16 33 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 34 H 0.14 -0.16 8.14 -2.38 -0.02 -0.18 16 35 H 0.10 0.67 8.12 -2.38 -0.02 0.65 16 36 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.41 10.64 7.35 -92.71 -0.68 9.96 16 39 H 0.11 4.23 8.14 -2.40 -0.02 4.21 16 40 H 0.10 4.15 8.14 -2.39 -0.02 4.13 16 41 H 0.27 15.79 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -86.77 368.51 2.74 -84.03 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: 0.39 Total: 17.02 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: 6.26 Total: 2.94 kcal Atomic # 7 Polarization: -94.64 SS G_CDS: -5.34 Total: -99.98 kcal Atomic # 8 Polarization: -41.61 SS G_CDS: 0.56 Total: -41.06 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Atomic # 16 Polarization: -8.63 SS G_CDS: -1.16 Total: -9.79 kcal Total: -86.77 2.74 -84.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689508596.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.318 kcal (2) G-P(sol) polarization free energy of solvation -86.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds