Wall clock time and date at job start Wed Apr 1 2020 00:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.99452 * 2 1 4 4 C 1.54316 * 109.88316 * 121.09712 * 2 1 3 5 5 H 1.09007 * 110.72361 * 215.76445 * 4 2 1 6 6 N 1.46500 * 110.72139 * 338.86147 * 4 2 1 7 7 C 1.34779 * 120.00169 * 204.99704 * 6 4 2 8 8 O 1.21282 * 119.99922 * 0.02562 * 7 6 4 9 9 C 1.50699 * 120.00037 * 180.02562 * 7 6 4 10 10 S 1.81000 * 109.46881 * 180.02562 * 9 7 6 11 11 C 1.76206 * 99.99929 * 180.02562 * 10 9 7 12 12 H 1.07998 * 119.99720 * 359.97438 * 11 10 9 13 13 C 1.38796 * 119.99847 * 180.02562 * 11 10 9 14 14 N 1.31625 * 120.00398 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99778 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47367 * 59.99618 * 15 13 11 17 17 H 1.48498 * 109.47311 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46831 * 299.99623 * 15 13 11 19 19 C 1.55160 * 102.94298 * 97.22454 * 4 2 1 20 20 C 1.54907 * 101.58026 * 35.50439 * 19 4 2 21 21 N 1.47023 * 109.88369 * 238.90824 * 2 1 3 22 22 C 1.34775 * 125.64891 * 59.55531 * 21 2 1 23 23 O 1.21618 * 120.00165 * 0.02562 * 22 21 2 24 24 C 1.47418 * 120.00040 * 180.02562 * 22 21 2 25 25 C 1.36092 * 126.44954 * 179.97438 * 24 22 21 26 26 O 1.34254 * 106.94815 * 179.97438 * 25 24 22 27 27 C 1.34047 * 108.23108 * 0.02562 * 26 25 24 28 28 N 1.29938 * 109.24093 * 359.74194 * 27 26 25 29 29 H 1.08999 * 109.47035 * 298.90290 * 1 2 3 30 30 H 1.09002 * 109.47399 * 58.90202 * 1 2 3 31 31 H 1.09000 * 109.47152 * 178.90598 * 1 2 3 32 32 H 0.96996 * 119.99986 * 25.00302 * 6 4 2 33 33 H 1.09000 * 109.47247 * 60.00371 * 9 7 6 34 34 H 1.09001 * 109.47358 * 299.99798 * 9 7 6 35 35 H 0.96996 * 120.00393 * 180.02562 * 14 13 11 36 36 H 1.08997 * 111.00463 * 153.57355 * 19 4 2 37 37 H 1.09001 * 111.00675 * 277.42717 * 19 4 2 38 38 H 1.09008 * 110.36554 * 204.15805 * 20 19 4 39 39 H 1.08993 * 110.46355 * 81.87417 * 20 19 4 40 40 H 1.07996 * 126.52740 * 359.95418 * 25 24 22 41 41 H 1.08002 * 125.38095 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7495 1.2426 5 1 2.9640 -0.2813 1.6201 6 7 1.0293 -0.8027 2.2874 7 6 1.3896 -0.9368 3.5792 8 8 2.5629 -1.0130 3.8768 9 6 0.3346 -0.9920 4.6539 10 16 1.1288 -1.1733 6.2702 11 6 -0.2946 -1.2107 7.3081 12 1 -1.2808 -1.1302 6.8752 13 6 -0.1484 -1.3427 8.6820 14 7 1.0535 -1.4404 9.2097 15 14 -1.6575 -1.3831 9.7823 16 1 -2.5175 -2.5321 9.4010 17 1 -1.2341 -1.5294 11.1981 18 1 -2.4205 -0.1191 9.6225 19 6 2.3519 -2.1695 0.6923 20 6 2.8569 -1.8497 -0.7368 21 7 2.0301 -0.7140 -1.1840 22 6 1.7754 -0.3844 -2.4657 23 8 1.0772 0.5788 -2.7187 24 6 2.3430 -1.1913 -3.5611 25 6 2.1717 -0.9791 -4.8944 26 8 2.8570 -1.9396 -5.5348 27 6 3.4363 -2.7251 -4.6160 28 7 3.1410 -2.2855 -3.4294 29 1 -0.3633 0.4967 0.8997 30 1 -0.3634 0.5308 -0.8800 31 1 -0.3633 -1.0275 -0.0196 32 1 0.0910 -0.7414 2.0495 33 1 -0.3228 -1.8426 4.4743 34 1 -0.2492 -0.0717 4.6376 35 1 1.1557 -1.5330 10.1698 36 1 3.1271 -2.6618 1.2794 37 1 1.4452 -2.7737 0.6602 38 1 2.7087 -2.7080 -1.3924 39 1 3.9093 -1.5672 -0.7148 40 1 1.5941 -0.1887 -5.3505 41 1 4.0541 -3.5851 -4.8284 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001718653305.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:38 Heat of formation + Delta-G solvation = -56.909195 kcal Electronic energy + Delta-G solvation = -26244.522827 eV Core-core repulsion = 22252.065050 eV Total energy + Delta-G solvation = -3992.457777 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.38900 -41.67103 -40.40095 -38.66164 -36.01220 -35.29153 -34.57033 -32.38572 -32.27142 -31.28606 -30.12199 -27.67164 -26.76982 -25.72527 -23.71643 -23.53561 -22.44575 -21.30010 -20.55155 -19.88167 -19.00546 -18.07346 -17.80644 -17.74710 -17.34700 -16.86494 -16.79871 -16.51647 -16.35709 -15.83542 -15.73398 -15.31282 -14.86421 -14.75628 -14.56305 -14.42640 -14.18971 -13.83018 -13.59194 -13.34061 -13.17153 -13.08138 -12.88049 -12.84383 -12.62052 -12.42993 -12.11786 -11.99360 -11.74283 -11.55908 -11.27052 -11.11750 -10.96700 -10.26452 -10.25711 -10.14791 -9.77646 -8.64608 -8.33300 -6.10901 0.09004 1.06670 1.25502 1.44610 1.44721 1.53584 1.59066 1.64718 1.88960 2.16977 2.27437 2.31831 2.98472 3.00752 3.29904 3.33372 3.51218 3.74543 3.87630 3.88646 3.95992 4.08199 4.21250 4.24123 4.32699 4.48583 4.52800 4.55605 4.61226 4.66253 4.79397 4.87985 4.96560 5.04129 5.09867 5.22367 5.32917 5.42963 5.43486 6.20954 6.25759 6.43960 6.47999 6.92945 7.08085 7.20552 8.75466 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.035181 B = 0.001927 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.697303 B =14524.143259 C =14908.868013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.134 3.866 3 H 0.081 0.919 4 C 0.141 3.859 5 H 0.092 0.908 6 N -0.706 5.706 7 C 0.539 3.461 8 O -0.558 6.558 9 C -0.131 4.131 10 S -0.147 6.147 11 C -0.547 4.547 12 H 0.083 0.917 13 C 0.013 3.987 14 N -0.911 5.911 15 Si 0.997 3.003 16 H -0.262 1.262 17 H -0.280 1.280 18 H -0.263 1.263 19 C -0.140 4.140 20 C 0.114 3.886 21 N -0.598 5.598 22 C 0.612 3.388 23 O -0.565 6.565 24 C -0.103 4.103 25 C 0.031 3.969 26 O -0.198 6.198 27 C 0.199 3.801 28 N -0.494 5.494 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.416 0.584 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.271 0.729 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.109 0.891 39 H 0.074 0.926 40 H 0.249 0.751 41 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.758 -2.681 -32.183 32.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.030 3.970 3 H 0.099 0.901 4 C 0.035 3.965 5 H 0.110 0.890 6 N -0.362 5.362 7 C 0.325 3.675 8 O -0.436 6.436 9 C -0.282 4.282 10 S 0.080 5.920 11 C -0.695 4.695 12 H 0.101 0.899 13 C -0.192 4.192 14 N -0.547 5.547 15 Si 0.819 3.181 16 H -0.187 1.187 17 H -0.205 1.205 18 H -0.187 1.187 19 C -0.179 4.179 20 C -0.008 4.008 21 N -0.330 5.330 22 C 0.402 3.598 23 O -0.445 6.445 24 C -0.221 4.221 25 C -0.043 4.043 26 O -0.083 6.083 27 C -0.030 4.030 28 N -0.223 5.223 29 H 0.104 0.896 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.257 0.743 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.080 0.920 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.127 0.873 39 H 0.092 0.908 40 H 0.265 0.735 41 H 0.315 0.685 Dipole moment (debyes) X Y Z Total from point charges 2.629 -2.562 -31.188 31.403 hybrid contribution -2.334 0.449 0.056 2.377 sum 0.295 -2.113 -31.131 31.204 Atomic orbital electron populations 1.22119 0.93440 1.03246 1.03659 1.21642 0.96010 0.95894 0.83465 0.90106 1.21857 0.91796 0.96821 0.86066 0.88966 1.45923 1.10990 1.75017 1.04302 1.20041 0.89045 0.74838 0.83556 1.90697 1.20477 1.49763 1.82633 1.23381 1.01109 1.06848 0.96904 1.85552 1.13865 1.96054 0.96521 1.23179 0.93630 1.58237 0.94448 0.89903 1.26110 1.00367 0.93818 0.98862 1.70168 1.24120 1.47486 1.12921 0.85024 0.77235 0.79445 0.76416 1.18655 1.20468 1.18746 1.23228 1.03077 0.96278 0.95330 1.22517 0.94414 0.89431 0.94480 1.48270 1.49917 1.30666 1.04130 1.16670 0.79491 0.82843 0.80795 1.90802 1.40525 1.29513 1.83695 1.21533 1.06780 0.99566 0.94230 1.25661 0.95276 0.92736 0.90665 1.84505 1.50339 1.33522 1.39944 1.29263 0.96803 0.97294 0.79622 1.70816 1.14438 1.10056 1.26974 0.89648 0.91491 0.91223 0.74330 0.87088 0.87176 0.92016 0.89466 0.89559 0.87322 0.90763 0.73482 0.68506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.01 7.93 71.98 0.57 -2.44 16 2 C 0.13 2.73 3.48 45.34 0.16 2.89 16 3 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 4 C 0.14 3.17 3.19 46.18 0.15 3.31 16 5 H 0.09 2.44 7.55 -2.38 -0.02 2.42 16 6 N -0.71 -17.22 4.89 -436.91 -2.14 -19.35 16 7 C 0.54 19.02 7.85 87.66 0.69 19.70 16 8 O -0.56 -24.69 15.51 -3.04 -0.05 -24.74 16 9 C -0.13 -5.04 6.16 71.24 0.44 -4.60 16 10 S -0.15 -8.03 20.57 -56.49 -1.16 -9.20 16 11 C -0.55 -30.93 9.50 67.95 0.65 -30.28 16 12 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 13 C 0.01 0.75 5.49 84.86 0.47 1.22 16 14 N -0.91 -55.64 13.22 21.65 0.29 -55.36 16 15 Si 1.00 43.34 29.55 68.60 2.03 45.37 16 16 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 17 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 18 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 19 C -0.14 -2.74 6.77 31.99 0.22 -2.52 16 20 C 0.11 2.02 6.14 86.85 0.53 2.55 16 21 N -0.60 -12.22 3.08 -791.90 -2.44 -14.66 16 22 C 0.61 13.61 7.63 86.66 0.66 14.27 16 23 O -0.57 -15.16 15.80 -4.09 -0.06 -15.22 16 24 C -0.10 -1.77 6.81 40.41 0.28 -1.50 16 25 C 0.03 0.36 11.95 67.32 0.80 1.17 16 26 O -0.20 -1.74 10.73 0.44 0.00 -1.74 16 27 C 0.20 1.29 13.19 130.52 1.72 3.01 16 28 N -0.49 -6.95 8.44 -305.15 -2.58 -9.52 16 29 H 0.08 1.32 6.76 -2.39 -0.02 1.31 16 30 H 0.07 1.42 6.77 -2.39 -0.02 1.40 16 31 H 0.07 1.15 8.03 -2.39 -0.02 1.13 16 32 H 0.42 7.80 5.86 -92.71 -0.54 7.26 16 33 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 34 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 35 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 36 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.11 1.83 6.16 -2.38 -0.01 1.81 16 39 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.25 1.62 8.06 -2.91 -0.02 1.60 16 41 H 0.30 -1.40 8.06 -2.91 -0.02 -1.43 16 Total: -1.00 -82.29 361.40 1.75 -80.54 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: 0.54 Total: 17.09 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 7.33 Total: 6.79 kcal Atomic # 7 Polarization: -92.03 SS G_CDS: -6.87 Total: -98.89 kcal Atomic # 8 Polarization: -41.59 SS G_CDS: -0.11 Total: -41.70 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 16 Polarization: -8.03 SS G_CDS: -1.16 Total: -9.20 kcal Total: -82.29 1.75 -80.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718653305.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.630 kcal (2) G-P(sol) polarization free energy of solvation -82.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds