Wall clock time and date at job start Tue Mar 31 2020 22:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29940 * 125.37399 * 2 1 4 4 C 1.36066 * 108.47609 * 179.97438 * 3 2 1 5 5 C 1.47418 * 126.45084 * 179.97438 * 4 3 2 6 6 O 1.21607 * 119.99845 * 180.02562 * 5 4 3 7 7 N 1.34781 * 119.99501 * 0.02562 * 5 4 3 8 8 C 1.47061 * 136.05901 * 359.63754 * 7 5 4 9 9 C 1.53243 * 88.08154 * 207.19844 * 8 7 5 10 10 C 1.52999 * 114.32870 * 220.46964 * 9 8 7 11 11 N 1.46498 * 109.47181 * 268.76120 * 10 9 8 12 12 C 1.34776 * 120.00428 * 179.97438 * 11 10 9 13 13 O 1.21288 * 119.99751 * 359.97438 * 12 11 10 14 14 C 1.50697 * 120.00445 * 179.97438 * 12 11 10 15 15 S 1.80994 * 109.47249 * 179.97438 * 14 12 11 16 16 C 1.76198 * 100.00180 * 180.02562 * 15 14 12 17 17 H 1.08005 * 120.00057 * 359.97438 * 16 15 14 18 18 C 1.38801 * 120.00174 * 180.02562 * 16 15 14 19 19 N 1.31629 * 119.99746 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 120.00030 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47131 * 90.00032 * 20 18 16 22 22 H 1.48493 * 109.47162 * 210.00101 * 20 18 16 23 23 H 1.48499 * 109.46943 * 330.00074 * 20 18 16 24 24 C 1.47068 * 136.05356 * 180.02562 * 7 5 4 25 25 C 1.36092 * 107.10165 * 359.97438 * 4 3 2 26 26 O 1.34044 * 125.38317 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.46676 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47627 * 300.02790 * 1 2 3 29 29 H 1.09005 * 109.47046 * 60.03529 * 1 2 3 30 30 H 1.08997 * 113.46719 * 321.92945 * 8 7 5 31 31 H 1.08997 * 113.47350 * 92.37374 * 8 7 5 32 32 H 1.08998 * 114.19584 * 87.72848 * 9 8 7 33 33 H 1.09008 * 109.46950 * 28.75545 * 10 9 8 34 34 H 1.08995 * 109.47424 * 148.75645 * 10 9 8 35 35 H 0.97005 * 120.00125 * 359.97438 * 11 10 9 36 36 H 1.08995 * 109.47203 * 300.00247 * 14 12 11 37 37 H 1.09005 * 109.47148 * 59.99865 * 14 12 11 38 38 H 0.97006 * 119.99901 * 180.02562 * 19 18 16 39 39 H 1.08998 * 113.46777 * 267.62628 * 24 7 5 40 40 H 1.09003 * 113.46836 * 38.06568 * 24 7 5 41 41 H 1.08002 * 126.52781 * 180.02562 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0595 0.0000 4 6 3.5612 0.6640 0.0006 5 6 4.7439 1.5440 0.0003 6 8 5.8604 1.0620 0.0004 7 7 4.5877 2.8828 -0.0002 8 6 3.4514 3.8162 -0.0069 9 6 4.3601 4.8366 -0.7009 10 6 4.1924 6.2727 -0.2007 11 7 3.1858 6.9588 -1.0144 12 6 2.8702 8.2431 -0.7545 13 8 3.4193 8.8307 0.1534 14 6 1.8351 8.9491 -1.5919 15 16 1.6356 10.6475 -0.9991 16 6 0.4048 11.2209 -2.1220 17 1 0.0173 10.5592 -2.8826 18 6 -0.0661 12.5234 -2.0298 19 7 -0.9852 12.9518 -2.8691 20 14 0.6045 13.6681 -0.7149 21 1 1.7843 14.3961 -1.2471 22 1 -0.4451 14.6438 -0.3259 23 1 1.0074 12.8744 0.4738 24 6 5.4787 4.0528 -0.0011 25 6 3.5660 -0.6969 0.0015 26 8 2.2832 -1.0929 0.0005 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3634 0.5142 0.8897 29 1 -0.3633 0.5133 -0.8903 30 1 2.6202 3.4838 -0.6288 31 1 3.1359 4.1234 0.9902 32 1 4.3719 4.7576 -1.7879 33 1 3.8704 6.2595 0.8406 34 1 5.1438 6.7986 -0.2801 35 1 2.7463 6.4888 -1.7403 36 1 2.1576 8.9627 -2.6329 37 1 0.8837 8.4230 -1.5132 38 1 -1.3141 13.8621 -2.8049 39 1 5.7092 4.4236 0.9977 40 1 6.3677 3.9210 -0.6179 41 1 4.4362 -1.3366 0.0025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721382118.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:48 Heat of formation + Delta-G solvation = -8.660707 kcal Electronic energy + Delta-G solvation = -25289.805984 eV Core-core repulsion = 21299.440418 eV Total energy + Delta-G solvation = -3990.365566 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.92633 -40.87058 -39.24541 -38.27140 -35.40691 -34.59996 -32.75569 -32.44572 -31.17241 -29.38166 -28.34569 -26.55673 -26.22891 -25.57897 -23.86691 -22.03228 -21.26156 -20.51631 -19.72730 -18.21339 -17.86825 -17.43143 -17.05245 -16.66890 -16.44359 -16.32491 -15.42659 -15.36627 -14.96259 -14.71555 -14.49035 -14.36644 -13.92776 -13.75621 -13.67505 -13.32624 -13.21823 -13.10823 -12.96284 -12.80277 -12.60649 -11.93704 -11.78136 -11.73069 -11.37776 -11.27267 -11.01480 -10.95701 -10.62592 -10.51466 -9.86561 -9.57123 -9.54087 -9.12183 -9.04406 -8.98727 -8.50948 -6.92652 -6.29637 -4.01406 0.60932 1.50041 2.04118 2.31721 2.73760 2.85731 2.95027 3.25733 3.30710 3.33140 3.49998 3.59518 3.89063 4.03222 4.26800 4.32535 4.43636 4.58699 4.71838 4.73294 4.82488 4.83732 4.94096 4.96438 5.09459 5.10601 5.13373 5.16493 5.24280 5.27520 5.38645 5.48456 5.57895 5.67553 5.75973 5.84290 6.00488 6.46807 6.96416 7.19925 7.56388 7.65681 7.93382 8.40894 8.45856 9.16565 10.79524 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.018622 B = 0.001873 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.204922 B =14945.654621 C =16125.543254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.199 3.801 3 N -0.459 5.459 4 C -0.067 4.067 5 C 0.631 3.369 6 O -0.538 6.538 7 N -0.632 5.632 8 C 0.115 3.885 9 C -0.141 4.141 10 C 0.135 3.865 11 N -0.736 5.736 12 C 0.531 3.469 13 O -0.519 6.519 14 C -0.124 4.124 15 S -0.142 6.142 16 C -0.521 4.521 17 H 0.088 0.912 18 C 0.095 3.905 19 N -0.880 5.880 20 Si 0.857 3.143 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 C 0.117 3.883 25 C 0.012 3.988 26 O -0.196 6.196 27 H 0.090 0.910 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.113 0.887 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.401 0.599 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.271 0.729 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.329 -29.613 4.824 30.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.010 4.010 3 N -0.189 5.189 4 C -0.186 4.186 5 C 0.421 3.579 6 O -0.415 6.415 7 N -0.366 5.366 8 C -0.008 4.008 9 C -0.160 4.160 10 C 0.010 3.990 11 N -0.391 5.391 12 C 0.317 3.683 13 O -0.394 6.394 14 C -0.275 4.275 15 S 0.084 5.916 16 C -0.669 4.669 17 H 0.106 0.894 18 C -0.114 4.114 19 N -0.517 5.517 20 Si 0.682 3.318 21 H -0.192 1.192 22 H -0.200 1.200 23 H -0.159 1.159 24 C -0.005 4.005 25 C -0.062 4.062 26 O -0.082 6.082 27 H 0.109 0.891 28 H 0.119 0.881 29 H 0.120 0.880 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.131 0.869 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.235 0.765 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.081 0.919 39 H 0.112 0.888 40 H 0.104 0.896 41 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 7.512 -28.376 6.294 30.021 hybrid contribution -0.452 -0.984 -1.011 1.481 sum 7.060 -29.360 5.283 30.656 Atomic orbital electron populations 1.20353 0.80619 1.05101 1.05622 1.26453 0.96778 0.78192 0.99588 1.70818 1.00560 1.29744 1.17821 1.21618 0.92029 0.92739 1.12253 1.16145 0.86162 0.79499 0.76128 1.90844 1.24583 1.74203 1.51884 1.49179 1.12450 1.03017 1.71923 1.23142 0.91268 0.84969 1.01381 1.23233 0.97532 0.93643 1.01598 1.21131 0.93008 0.89464 0.95351 1.45926 1.43396 1.12974 1.36795 1.20279 0.82751 0.80976 0.84297 1.90709 1.52506 1.65338 1.30817 1.23276 1.00134 1.01635 1.02443 1.84796 1.54488 1.05520 1.46793 1.22315 1.24520 1.01511 1.18535 0.89375 1.24722 0.93841 0.97147 0.95665 1.69940 1.27835 1.17864 1.36042 0.86728 0.79490 0.81876 0.83718 1.19215 1.19968 1.15912 1.22988 0.95001 0.81197 1.01355 1.25265 0.84938 0.95536 1.00441 1.84415 1.16656 1.38023 1.69154 0.89099 0.88070 0.88035 0.89000 0.89159 0.86903 0.90887 0.90675 0.76531 0.88479 0.88404 0.91946 0.88833 0.89624 0.75288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.18 10.51 36.01 0.38 0.20 16 2 C 0.20 1.42 8.30 -13.08 -0.11 1.31 16 3 N -0.46 -4.28 9.86 -7.65 -0.08 -4.35 16 4 C -0.07 -0.66 6.96 -83.02 -0.58 -1.24 16 5 C 0.63 7.26 8.06 -12.52 -0.10 7.16 16 6 O -0.54 -7.49 17.66 5.27 0.09 -7.39 16 7 N -0.63 -6.07 3.69 -186.69 -0.69 -6.76 16 8 C 0.12 0.89 7.34 -8.64 -0.06 0.82 16 9 C -0.14 -0.96 4.09 -90.25 -0.37 -1.33 16 10 C 0.14 1.23 5.59 -4.04 -0.02 1.21 16 11 N -0.74 -8.15 5.56 -60.29 -0.33 -8.49 16 12 C 0.53 8.80 7.85 -10.99 -0.09 8.72 16 13 O -0.52 -10.68 15.86 5.55 0.09 -10.60 16 14 C -0.12 -2.29 6.16 36.00 0.22 -2.07 16 15 S -0.14 -3.53 18.55 -107.50 -1.99 -5.53 16 16 C -0.52 -14.79 10.04 30.94 0.31 -14.48 16 17 H 0.09 2.60 8.03 -52.48 -0.42 2.18 16 18 C 0.09 2.75 5.50 -17.43 -0.10 2.65 16 19 N -0.88 -26.31 13.97 55.49 0.78 -25.54 16 20 Si 0.86 21.57 27.74 -169.99 -4.72 16.85 16 21 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.24 -5.90 6.74 56.52 0.38 -5.52 16 24 C 0.12 0.88 8.20 -8.52 -0.07 0.82 16 25 C 0.01 0.09 11.95 29.96 0.36 0.45 16 26 O -0.20 -1.45 10.73 6.53 0.07 -1.38 16 27 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 28 H 0.10 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.10 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.09 0.73 7.47 -51.93 -0.39 0.34 16 31 H 0.09 0.68 7.88 -51.93 -0.41 0.27 16 32 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.71 7.81 -51.92 -0.41 0.30 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.40 3.33 8.47 -40.82 -0.35 2.98 16 36 H 0.10 1.66 8.14 -51.92 -0.42 1.24 16 37 H 0.10 1.66 8.14 -51.91 -0.42 1.24 16 38 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 39 H 0.09 0.62 8.10 -51.93 -0.42 0.20 16 40 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.23 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 374.38 15.07 5.64 5.64 Total: -1.00 -37.94 374.38 -6.72 -44.66 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -5.35 Total: -1.33 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -0.23 Total: 4.21 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: -0.32 Total: -45.14 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: 0.25 Total: -19.37 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.72 Total: 16.85 kcal Atomic # 16 Polarization: -3.53 SS G_CDS: -1.99 Total: -5.53 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -37.94 -6.72 -44.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721382118.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.998 kcal (2) G-P(sol) polarization free energy of solvation -37.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds