Wall clock time and date at job start Tue Mar 31 2020 22:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29940 * 125.37399 * 2 1 4 4 C 1.36066 * 108.47609 * 179.97438 * 3 2 1 5 5 C 1.47418 * 126.45084 * 179.97438 * 4 3 2 6 6 O 1.21607 * 119.99845 * 180.02562 * 5 4 3 7 7 N 1.34781 * 119.99501 * 0.02562 * 5 4 3 8 8 C 1.47061 * 136.05901 * 359.63754 * 7 5 4 9 9 C 1.53243 * 88.08154 * 207.19844 * 8 7 5 10 10 C 1.52999 * 114.32870 * 220.46964 * 9 8 7 11 11 N 1.46498 * 109.47181 * 268.76120 * 10 9 8 12 12 C 1.34776 * 120.00428 * 179.97438 * 11 10 9 13 13 O 1.21288 * 119.99751 * 359.97438 * 12 11 10 14 14 C 1.50697 * 120.00445 * 179.97438 * 12 11 10 15 15 S 1.80994 * 109.47249 * 179.97438 * 14 12 11 16 16 C 1.76198 * 100.00180 * 180.02562 * 15 14 12 17 17 H 1.08005 * 120.00057 * 359.97438 * 16 15 14 18 18 C 1.38801 * 120.00174 * 180.02562 * 16 15 14 19 19 N 1.31629 * 119.99746 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 120.00030 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47131 * 90.00032 * 20 18 16 22 22 H 1.48493 * 109.47162 * 210.00101 * 20 18 16 23 23 H 1.48499 * 109.46943 * 330.00074 * 20 18 16 24 24 C 1.47068 * 136.05356 * 180.02562 * 7 5 4 25 25 C 1.36092 * 107.10165 * 359.97438 * 4 3 2 26 26 O 1.34044 * 125.38317 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.46676 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47627 * 300.02790 * 1 2 3 29 29 H 1.09005 * 109.47046 * 60.03529 * 1 2 3 30 30 H 1.08997 * 113.46719 * 321.92945 * 8 7 5 31 31 H 1.08997 * 113.47350 * 92.37374 * 8 7 5 32 32 H 1.08998 * 114.19584 * 87.72848 * 9 8 7 33 33 H 1.09008 * 109.46950 * 28.75545 * 10 9 8 34 34 H 1.08995 * 109.47424 * 148.75645 * 10 9 8 35 35 H 0.97005 * 120.00125 * 359.97438 * 11 10 9 36 36 H 1.08995 * 109.47203 * 300.00247 * 14 12 11 37 37 H 1.09005 * 109.47148 * 59.99865 * 14 12 11 38 38 H 0.97006 * 119.99901 * 180.02562 * 19 18 16 39 39 H 1.08998 * 113.46777 * 267.62628 * 24 7 5 40 40 H 1.09003 * 113.46836 * 38.06568 * 24 7 5 41 41 H 1.08002 * 126.52781 * 180.02562 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0595 0.0000 4 6 3.5612 0.6640 0.0006 5 6 4.7439 1.5440 0.0003 6 8 5.8604 1.0620 0.0004 7 7 4.5877 2.8828 -0.0002 8 6 3.4514 3.8162 -0.0069 9 6 4.3601 4.8366 -0.7009 10 6 4.1924 6.2727 -0.2007 11 7 3.1858 6.9588 -1.0144 12 6 2.8702 8.2431 -0.7545 13 8 3.4193 8.8307 0.1534 14 6 1.8351 8.9491 -1.5919 15 16 1.6356 10.6475 -0.9991 16 6 0.4048 11.2209 -2.1220 17 1 0.0173 10.5592 -2.8826 18 6 -0.0661 12.5234 -2.0298 19 7 -0.9852 12.9518 -2.8691 20 14 0.6045 13.6681 -0.7149 21 1 1.7843 14.3961 -1.2471 22 1 -0.4451 14.6438 -0.3259 23 1 1.0074 12.8744 0.4738 24 6 5.4787 4.0528 -0.0011 25 6 3.5660 -0.6969 0.0015 26 8 2.2832 -1.0929 0.0005 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3634 0.5142 0.8897 29 1 -0.3633 0.5133 -0.8903 30 1 2.6202 3.4838 -0.6288 31 1 3.1359 4.1234 0.9902 32 1 4.3719 4.7576 -1.7879 33 1 3.8704 6.2595 0.8406 34 1 5.1438 6.7986 -0.2801 35 1 2.7463 6.4888 -1.7403 36 1 2.1576 8.9627 -2.6329 37 1 0.8837 8.4230 -1.5132 38 1 -1.3141 13.8621 -2.8049 39 1 5.7092 4.4236 0.9977 40 1 6.3677 3.9210 -0.6179 41 1 4.4362 -1.3366 0.0025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001721382118.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:48 Heat of formation + Delta-G solvation = -39.173198 kcal Electronic energy + Delta-G solvation = -25291.129105 eV Core-core repulsion = 21299.440418 eV Total energy + Delta-G solvation = -3991.688686 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.49550 -41.61474 -40.46884 -39.14369 -36.02426 -35.68269 -34.64427 -33.22238 -32.17262 -30.56530 -28.82518 -27.86862 -27.22603 -26.98356 -24.55336 -22.58858 -22.01606 -21.66882 -20.44704 -19.82040 -18.83753 -18.03017 -17.83618 -17.65749 -17.58886 -17.09768 -17.06902 -16.58275 -16.31476 -15.73199 -15.40355 -15.17340 -14.90117 -14.89028 -14.72919 -14.37272 -14.12097 -13.92598 -13.68526 -13.58772 -13.32081 -13.30827 -13.10096 -12.95904 -12.63875 -12.43666 -12.37239 -12.01086 -11.85050 -11.67222 -11.31190 -11.14692 -10.95454 -10.49522 -10.17769 -10.07677 -9.81275 -8.95876 -8.49103 -6.19188 -0.00989 0.89088 1.02688 1.33649 1.46965 1.50003 1.59126 1.62734 1.70501 2.09827 2.25325 2.29172 2.74349 2.77210 2.89244 3.18584 3.43259 3.74533 3.77356 3.88319 4.01785 4.17041 4.29183 4.34663 4.38060 4.49298 4.53528 4.53979 4.56147 4.66473 4.67460 4.72881 4.75478 4.81601 4.93652 5.18026 5.23114 5.45695 5.73274 6.14312 6.38089 6.44822 6.52134 6.87659 6.96371 7.25013 8.63114 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.018622 B = 0.001873 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.204922 B =14945.654621 C =16125.543254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.201 3.799 3 N -0.482 5.482 4 C -0.098 4.098 5 C 0.624 3.376 6 O -0.574 6.574 7 N -0.637 5.637 8 C 0.117 3.883 9 C -0.117 4.117 10 C 0.137 3.863 11 N -0.710 5.710 12 C 0.536 3.464 13 O -0.563 6.563 14 C -0.112 4.112 15 S -0.178 6.178 16 C -0.527 4.527 17 H 0.063 0.937 18 C 0.044 3.956 19 N -0.917 5.917 20 Si 0.915 3.085 21 H -0.263 1.263 22 H -0.261 1.261 23 H -0.236 1.236 24 C 0.113 3.887 25 C 0.024 3.976 26 O -0.197 6.197 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.126 0.874 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.418 0.582 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.276 0.724 39 H 0.104 0.896 40 H 0.087 0.913 41 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.358 -30.974 5.208 32.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.008 4.008 3 N -0.213 5.213 4 C -0.217 4.217 5 C 0.415 3.585 6 O -0.455 6.455 7 N -0.370 5.370 8 C -0.005 4.005 9 C -0.136 4.136 10 C 0.013 3.987 11 N -0.364 5.364 12 C 0.322 3.678 13 O -0.441 6.441 14 C -0.263 4.263 15 S 0.049 5.951 16 C -0.675 4.675 17 H 0.081 0.919 18 C -0.162 4.162 19 N -0.556 5.556 20 Si 0.737 3.263 21 H -0.188 1.188 22 H -0.185 1.185 23 H -0.160 1.160 24 C -0.009 4.009 25 C -0.051 4.051 26 O -0.083 6.083 27 H 0.129 0.871 28 H 0.128 0.872 29 H 0.129 0.871 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.144 0.856 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.255 0.745 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.086 0.914 39 H 0.122 0.878 40 H 0.106 0.894 41 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 7.520 -29.761 6.649 31.408 hybrid contribution -0.482 -0.746 -1.187 1.483 sum 7.039 -30.507 5.462 31.781 Atomic orbital electron populations 1.20601 0.77840 1.06722 1.06420 1.27299 0.98068 0.77625 0.97849 1.70779 1.00469 1.30798 1.19219 1.21617 0.92055 0.93488 1.14511 1.16416 0.86205 0.80158 0.75751 1.90806 1.25857 1.74933 1.53860 1.49312 1.13727 1.02996 1.70942 1.23206 0.90989 0.84546 1.01731 1.23033 0.96776 0.91730 1.02084 1.21222 0.92185 0.90234 0.95037 1.45676 1.42833 1.11094 1.36787 1.19891 0.82130 0.82315 0.83483 1.90703 1.54089 1.66716 1.32642 1.23279 1.02078 0.97492 1.03443 1.84722 1.53113 1.10767 1.46547 1.22472 1.25113 1.01401 1.18481 0.91878 1.25578 0.94177 0.98758 0.97655 1.70020 1.29138 1.18674 1.37722 0.85860 0.79218 0.80075 0.81180 1.18798 1.18525 1.15951 1.23143 0.95096 0.80515 1.02185 1.25718 0.85626 0.95199 0.98525 1.84449 1.16588 1.38172 1.69096 0.87106 0.87176 0.87081 0.88979 0.88803 0.85603 0.90968 0.90676 0.74505 0.86838 0.86676 0.91440 0.87780 0.89407 0.73083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.22 10.51 71.24 0.75 0.53 16 2 C 0.20 2.56 8.30 88.39 0.73 3.30 16 3 N -0.48 -8.51 9.86 -293.04 -2.89 -11.40 16 4 C -0.10 -1.90 6.96 40.41 0.28 -1.62 16 5 C 0.62 14.23 8.06 86.66 0.70 14.93 16 6 O -0.57 -16.13 17.66 -4.05 -0.07 -16.20 16 7 N -0.64 -11.61 3.69 -862.80 -3.19 -14.80 16 8 C 0.12 1.60 7.34 83.09 0.61 2.21 16 9 C -0.12 -1.31 4.09 -10.55 -0.04 -1.35 16 10 C 0.14 2.15 5.59 86.38 0.48 2.64 16 11 N -0.71 -13.72 5.56 -463.06 -2.57 -16.30 16 12 C 0.54 16.70 7.85 87.66 0.69 17.38 16 13 O -0.56 -22.47 15.86 -3.05 -0.05 -22.52 16 14 C -0.11 -3.94 6.16 71.24 0.44 -3.50 16 15 S -0.18 -8.74 18.55 -56.49 -1.05 -9.78 16 16 C -0.53 -30.10 10.04 67.95 0.68 -29.41 16 17 H 0.06 3.79 8.03 -2.91 -0.02 3.77 16 18 C 0.04 2.53 5.50 84.86 0.47 2.99 16 19 N -0.92 -55.31 13.97 21.65 0.30 -55.00 16 20 Si 0.91 44.48 27.74 68.60 1.90 46.39 16 21 H -0.26 -12.52 7.11 99.48 0.71 -11.81 16 22 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 23 H -0.24 -11.40 6.74 99.48 0.67 -10.73 16 24 C 0.11 1.52 8.20 83.17 0.68 2.21 16 25 C 0.02 0.34 11.95 67.32 0.80 1.14 16 26 O -0.20 -2.62 10.73 0.47 0.01 -2.61 16 27 H 0.11 -0.03 8.14 -2.39 -0.02 -0.05 16 28 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 29 H 0.11 0.23 8.14 -2.38 -0.02 0.22 16 30 H 0.09 1.29 7.47 -2.39 -0.02 1.28 16 31 H 0.09 1.24 7.88 -2.39 -0.02 1.22 16 32 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.07 1.23 7.81 -2.38 -0.02 1.21 16 34 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.42 5.47 8.47 -92.70 -0.79 4.68 16 36 H 0.11 3.64 8.14 -2.40 -0.02 3.62 16 37 H 0.12 3.67 8.14 -2.39 -0.02 3.65 16 38 H 0.28 15.41 8.31 -92.70 -0.77 14.64 16 39 H 0.10 1.20 8.10 -2.39 -0.02 1.18 16 40 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.25 2.09 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -83.17 374.38 -0.08 -83.25 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: 0.25 Total: 7.54 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: 7.27 Total: 11.44 kcal Atomic # 7 Polarization: -89.15 SS G_CDS: -8.35 Total: -97.50 kcal Atomic # 8 Polarization: -41.22 SS G_CDS: -0.12 Total: -41.33 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.90 Total: 46.39 kcal Atomic # 16 Polarization: -8.74 SS G_CDS: -1.05 Total: -9.78 kcal Total: -83.17 -0.08 -83.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721382118.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.074 kcal (2) G-P(sol) polarization free energy of solvation -83.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds