Wall clock time and date at job start Wed Apr 1 2020 00:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.87594 * 2 1 4 4 C 1.54322 * 109.88797 * 238.82300 * 2 1 3 5 5 C 1.55154 * 102.94204 * 262.77633 * 4 2 1 6 6 H 1.08999 * 111.00353 * 82.56825 * 5 4 2 7 7 N 1.46500 * 111.00473 * 206.42028 * 5 4 2 8 8 C 1.34781 * 120.00190 * 198.64917 * 7 5 4 9 9 O 1.21609 * 119.99799 * 359.97438 * 8 7 5 10 10 C 1.47419 * 120.00147 * 180.02562 * 8 7 5 11 11 C 1.36088 * 126.44966 * 179.71102 * 10 8 7 12 12 O 1.34249 * 106.94974 * 179.84059 * 11 10 8 13 13 C 1.34046 * 108.22936 * 0.42526 * 12 11 10 14 14 N 1.29935 * 109.23973 * 359.73402 * 13 12 11 15 15 C 1.54910 * 101.58031 * 324.49480 * 5 4 2 16 16 N 1.47019 * 109.88296 * 121.00978 * 2 1 3 17 17 C 1.34775 * 125.65013 * 300.46344 * 16 2 1 18 18 O 1.21276 * 120.00034 * 359.97438 * 17 16 2 19 19 C 1.50705 * 119.99931 * 179.97438 * 17 16 2 20 20 S 1.81002 * 109.46947 * 179.97438 * 19 17 16 21 21 C 1.76200 * 99.99831 * 179.97438 * 20 19 17 22 22 H 1.07996 * 120.00399 * 0.02562 * 21 20 19 23 23 C 1.38805 * 119.99809 * 179.97438 * 21 20 19 24 24 N 1.31629 * 120.00022 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99832 * 179.97438 * 23 21 20 26 26 H 1.48510 * 109.46839 * 90.00295 * 25 23 21 27 27 H 1.48497 * 109.47410 * 210.00190 * 25 23 21 28 28 H 1.48499 * 109.47405 * 330.00896 * 25 23 21 29 29 H 1.08998 * 109.47453 * 300.44250 * 1 2 3 30 30 H 1.09010 * 109.46957 * 60.44154 * 1 2 3 31 31 H 1.08997 * 109.47094 * 180.43629 * 1 2 3 32 32 H 1.08999 * 110.71849 * 21.13332 * 4 2 1 33 33 H 1.09002 * 110.72203 * 144.41016 * 4 2 1 34 34 H 0.97003 * 119.99774 * 18.65208 * 7 5 4 35 35 H 1.08001 * 126.52254 * 0.02562 * 11 10 8 36 36 H 1.08006 * 125.38304 * 179.76574 * 13 12 11 37 37 H 1.08998 * 110.36709 * 278.17139 * 15 5 4 38 38 H 1.09005 * 110.36466 * 155.84673 * 15 5 4 39 39 H 1.09002 * 109.46910 * 299.99521 * 19 17 16 40 40 H 1.08995 * 109.47630 * 59.99841 * 19 17 16 41 41 H 0.96997 * 120.00069 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7513 -1.2416 5 6 2.3520 -2.1704 -0.6892 6 1 1.4453 -2.7745 -0.6564 7 7 3.3938 -2.8333 -1.4775 8 6 3.5367 -4.1720 -1.4153 9 8 2.8011 -4.8297 -0.7045 10 6 4.5855 -4.8390 -2.2081 11 6 4.8486 -6.1738 -2.2405 12 8 5.8744 -6.3500 -3.0885 13 6 6.2400 -5.1495 -3.5596 14 7 5.4765 -4.2352 -3.0406 15 6 2.8568 -1.8486 0.7395 16 7 2.0300 -0.7123 1.1850 17 6 1.7750 -0.3810 2.4662 18 8 1.0785 0.5796 2.7172 19 6 2.3553 -1.2044 3.5872 20 16 1.8361 -0.5110 5.1764 21 6 2.6324 -1.6348 6.2753 22 1 3.2237 -2.4480 5.8812 23 6 2.5005 -1.4743 7.6478 24 7 1.7801 -0.4830 8.1283 25 14 3.3441 -2.6661 8.8128 26 1 4.7041 -2.1641 9.1351 27 1 2.5504 -2.7824 10.0624 28 1 3.4489 -3.9992 8.1670 29 1 -0.3634 0.5207 0.8860 30 1 -0.3633 0.5070 -0.8940 31 1 -0.3633 -1.0276 0.0078 32 1 1.2919 -0.7920 -2.0189 33 1 2.9658 -0.2854 -1.6178 34 1 3.9809 -2.3086 -2.0441 35 1 4.3290 -6.9449 -1.6912 36 1 7.0422 -4.9705 -4.2603 37 1 3.9091 -1.5655 0.7152 38 1 2.7088 -2.7060 1.3962 39 1 2.0000 -2.2316 3.5051 40 1 3.4433 -1.1901 3.5230 41 1 1.6877 -0.3710 9.0873 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001735320309.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:39 Heat of formation + Delta-G solvation = -39.974295 kcal Electronic energy + Delta-G solvation = -26228.107053 eV Core-core repulsion = 22236.383629 eV Total energy + Delta-G solvation = -3991.723425 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.92673 -40.52687 -39.39888 -37.35080 -35.38930 -34.48456 -32.40119 -32.18922 -31.03387 -29.85667 -28.68896 -26.03486 -25.46366 -24.95038 -23.31051 -22.60886 -21.20107 -20.93748 -19.21261 -18.83174 -17.72050 -17.23418 -17.09756 -16.90175 -16.22392 -15.67735 -15.48788 -15.11431 -14.90197 -14.77548 -14.38155 -14.33885 -14.01327 -13.79429 -13.53687 -13.11837 -13.07081 -12.61570 -12.53937 -12.16150 -11.88736 -11.75627 -11.59047 -11.40357 -11.33588 -11.03655 -10.99184 -10.86654 -10.73321 -10.57506 -9.79670 -9.74760 -9.57029 -9.24949 -9.03796 -8.52164 -8.20743 -6.47140 -6.18905 -3.89162 0.63518 1.53182 2.15963 2.55656 2.88101 2.97945 3.08705 3.24638 3.28508 3.32990 3.49971 3.65920 4.09990 4.23298 4.33133 4.34417 4.41074 4.67162 4.91343 4.98811 5.02844 5.08018 5.11760 5.16243 5.32888 5.40533 5.50868 5.54016 5.58435 5.62264 5.65564 5.72977 5.93250 6.03027 6.06642 6.18775 6.29545 6.54596 6.82085 7.14515 7.62629 7.66529 7.75233 8.38442 8.57872 9.26489 10.88573 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.010944 B = 0.002683 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2557.769388 B =10434.029425 C =12602.805153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.139 3.861 3 H 0.079 0.921 4 C -0.133 4.133 5 C 0.134 3.866 6 H 0.108 0.892 7 N -0.703 5.703 8 C 0.604 3.396 9 O -0.527 6.527 10 C -0.077 4.077 11 C 0.022 3.978 12 O -0.199 6.199 13 C 0.181 3.819 14 N -0.468 5.468 15 C 0.092 3.908 16 N -0.621 5.621 17 C 0.552 3.448 18 O -0.511 6.511 19 C -0.148 4.148 20 S -0.060 6.060 21 C -0.534 4.534 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.411 0.589 35 H 0.232 0.768 36 H 0.256 0.744 37 H 0.071 0.929 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.750 -8.505 -28.661 30.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.035 3.965 3 H 0.097 0.903 4 C -0.171 4.171 5 C 0.028 3.972 6 H 0.126 0.874 7 N -0.354 5.354 8 C 0.389 3.611 9 O -0.403 6.403 10 C -0.196 4.196 11 C -0.053 4.053 12 O -0.083 6.083 13 C -0.048 4.048 14 N -0.197 5.197 15 C -0.033 4.033 16 N -0.359 5.359 17 C 0.341 3.659 18 O -0.385 6.385 19 C -0.299 4.299 20 S 0.167 5.833 21 C -0.682 4.682 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.203 1.203 27 H -0.207 1.207 28 H -0.197 1.197 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.110 0.890 33 H 0.102 0.898 34 H 0.248 0.752 35 H 0.248 0.752 36 H 0.271 0.729 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.130 -6.779 -27.639 29.111 hybrid contribution 1.812 -2.331 0.243 2.963 sum 7.942 -9.110 -27.397 29.944 Atomic orbital electron populations 1.22186 0.94448 1.02510 1.03240 1.21431 0.95070 0.96416 0.83559 0.90302 1.23010 1.02633 0.93775 0.97688 1.22148 0.91351 0.93568 0.90117 0.87368 1.45640 1.36085 1.06671 1.47007 1.16762 0.81811 0.82168 0.80372 1.90889 1.44443 1.64826 1.40118 1.21747 1.01580 0.92172 1.04146 1.25393 0.88534 0.98563 0.92760 1.84467 1.40882 1.36149 1.46851 1.28152 1.00559 0.76168 0.99953 1.70745 1.05539 1.33531 1.09895 1.22627 0.95287 0.90134 0.95295 1.48498 1.52042 1.30385 1.04977 1.19992 0.79955 0.84694 0.81269 1.90690 1.37294 1.28040 1.82474 1.23532 1.03736 1.02656 0.99939 1.85350 1.67315 1.40071 0.90582 1.22862 1.36472 1.15799 0.93081 0.90951 1.24989 0.95256 0.95992 0.97342 1.70018 1.37408 1.29256 1.13651 0.86170 0.79180 0.80566 0.79610 1.20288 1.20747 1.19664 0.90408 0.91917 0.92478 0.89033 0.89815 0.75242 0.75173 0.72871 0.91072 0.89624 0.89232 0.89395 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.98 9.06 37.16 0.34 -1.64 16 2 C 0.14 1.63 3.49 -66.96 -0.23 1.39 16 3 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 4 C -0.13 -1.05 6.12 -24.90 -0.15 -1.20 16 5 C 0.13 1.29 3.31 -65.78 -0.22 1.08 16 6 H 0.11 1.18 7.73 -51.93 -0.40 0.78 16 7 N -0.70 -6.13 5.23 -52.80 -0.28 -6.40 16 8 C 0.60 6.39 7.81 -12.52 -0.10 6.29 16 9 O -0.53 -7.20 16.64 5.27 0.09 -7.11 16 10 C -0.08 -0.67 6.99 -83.02 -0.58 -1.25 16 11 C 0.02 0.15 11.94 29.96 0.36 0.50 16 12 O -0.20 -1.14 10.73 6.54 0.07 -1.07 16 13 C 0.18 0.82 13.19 51.96 0.69 1.50 16 14 N -0.47 -3.51 11.06 -11.48 -0.13 -3.64 16 15 C 0.09 1.12 6.38 -2.53 -0.02 1.10 16 16 N -0.62 -9.18 3.08 -163.02 -0.50 -9.69 16 17 C 0.55 10.89 7.65 -10.98 -0.08 10.81 16 18 O -0.51 -11.78 14.76 5.56 0.08 -11.70 16 19 C -0.15 -3.17 5.16 36.01 0.19 -2.98 16 20 S -0.06 -1.66 20.57 -107.50 -2.21 -3.88 16 21 C -0.53 -15.55 9.50 30.94 0.29 -15.25 16 22 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 23 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 24 N -0.87 -26.53 13.22 55.49 0.73 -25.80 16 25 Si 0.92 21.81 29.55 -169.99 -5.02 16.79 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 28 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 29 H 0.08 1.19 6.74 -51.93 -0.35 0.84 16 30 H 0.06 0.58 8.14 -51.92 -0.42 0.15 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 0.58 7.83 -51.93 -0.41 0.18 16 33 H 0.08 0.53 8.00 -51.93 -0.42 0.11 16 34 H 0.41 2.88 8.24 -40.82 -0.34 2.55 16 35 H 0.23 1.04 8.06 -52.49 -0.42 0.61 16 36 H 0.26 -0.14 8.06 -52.48 -0.42 -0.56 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.09 1.16 7.48 -51.93 -0.39 0.77 16 39 H 0.09 1.83 7.85 -51.92 -0.41 1.42 16 40 H 0.09 1.77 8.14 -51.92 -0.42 1.35 16 41 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 369.08 15.07 5.56 5.56 Total: -1.00 -37.98 369.08 -6.43 -44.42 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -5.21 Total: 0.15 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: 0.38 Total: 2.38 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: -0.17 Total: -45.53 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: 0.24 Total: -19.89 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -37.98 -6.43 -44.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735320309.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.442 kcal (2) G-P(sol) polarization free energy of solvation -37.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds