Wall clock time and date at job start Wed Apr 1 2020 00:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.87594 * 2 1 4 4 C 1.54322 * 109.88797 * 238.82300 * 2 1 3 5 5 C 1.55154 * 102.94204 * 262.77633 * 4 2 1 6 6 H 1.08999 * 111.00353 * 82.56825 * 5 4 2 7 7 N 1.46500 * 111.00473 * 206.42028 * 5 4 2 8 8 C 1.34781 * 120.00190 * 198.64917 * 7 5 4 9 9 O 1.21609 * 119.99799 * 359.97438 * 8 7 5 10 10 C 1.47419 * 120.00147 * 180.02562 * 8 7 5 11 11 C 1.36088 * 126.44966 * 179.71102 * 10 8 7 12 12 O 1.34249 * 106.94974 * 179.84059 * 11 10 8 13 13 C 1.34046 * 108.22936 * 0.42526 * 12 11 10 14 14 N 1.29935 * 109.23973 * 359.73402 * 13 12 11 15 15 C 1.54910 * 101.58031 * 324.49480 * 5 4 2 16 16 N 1.47019 * 109.88296 * 121.00978 * 2 1 3 17 17 C 1.34775 * 125.65013 * 300.46344 * 16 2 1 18 18 O 1.21276 * 120.00034 * 359.97438 * 17 16 2 19 19 C 1.50705 * 119.99931 * 179.97438 * 17 16 2 20 20 S 1.81002 * 109.46947 * 179.97438 * 19 17 16 21 21 C 1.76200 * 99.99831 * 179.97438 * 20 19 17 22 22 H 1.07996 * 120.00399 * 0.02562 * 21 20 19 23 23 C 1.38805 * 119.99809 * 179.97438 * 21 20 19 24 24 N 1.31629 * 120.00022 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99832 * 179.97438 * 23 21 20 26 26 H 1.48510 * 109.46839 * 90.00295 * 25 23 21 27 27 H 1.48497 * 109.47410 * 210.00190 * 25 23 21 28 28 H 1.48499 * 109.47405 * 330.00896 * 25 23 21 29 29 H 1.08998 * 109.47453 * 300.44250 * 1 2 3 30 30 H 1.09010 * 109.46957 * 60.44154 * 1 2 3 31 31 H 1.08997 * 109.47094 * 180.43629 * 1 2 3 32 32 H 1.08999 * 110.71849 * 21.13332 * 4 2 1 33 33 H 1.09002 * 110.72203 * 144.41016 * 4 2 1 34 34 H 0.97003 * 119.99774 * 18.65208 * 7 5 4 35 35 H 1.08001 * 126.52254 * 0.02562 * 11 10 8 36 36 H 1.08006 * 125.38304 * 179.76574 * 13 12 11 37 37 H 1.08998 * 110.36709 * 278.17139 * 15 5 4 38 38 H 1.09005 * 110.36466 * 155.84673 * 15 5 4 39 39 H 1.09002 * 109.46910 * 299.99521 * 19 17 16 40 40 H 1.08995 * 109.47630 * 59.99841 * 19 17 16 41 41 H 0.96997 * 120.00069 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7513 -1.2416 5 6 2.3520 -2.1704 -0.6892 6 1 1.4453 -2.7745 -0.6564 7 7 3.3938 -2.8333 -1.4775 8 6 3.5367 -4.1720 -1.4153 9 8 2.8011 -4.8297 -0.7045 10 6 4.5855 -4.8390 -2.2081 11 6 4.8486 -6.1738 -2.2405 12 8 5.8744 -6.3500 -3.0885 13 6 6.2400 -5.1495 -3.5596 14 7 5.4765 -4.2352 -3.0406 15 6 2.8568 -1.8486 0.7395 16 7 2.0300 -0.7123 1.1850 17 6 1.7750 -0.3810 2.4662 18 8 1.0785 0.5796 2.7172 19 6 2.3553 -1.2044 3.5872 20 16 1.8361 -0.5110 5.1764 21 6 2.6324 -1.6348 6.2753 22 1 3.2237 -2.4480 5.8812 23 6 2.5005 -1.4743 7.6478 24 7 1.7801 -0.4830 8.1283 25 14 3.3441 -2.6661 8.8128 26 1 4.7041 -2.1641 9.1351 27 1 2.5504 -2.7824 10.0624 28 1 3.4489 -3.9992 8.1670 29 1 -0.3634 0.5207 0.8860 30 1 -0.3633 0.5070 -0.8940 31 1 -0.3633 -1.0276 0.0078 32 1 1.2919 -0.7920 -2.0189 33 1 2.9658 -0.2854 -1.6178 34 1 3.9809 -2.3086 -2.0441 35 1 4.3290 -6.9449 -1.6912 36 1 7.0422 -4.9705 -4.2603 37 1 3.9091 -1.5655 0.7152 38 1 2.7088 -2.7060 1.3962 39 1 2.0000 -2.2316 3.5051 40 1 3.4433 -1.1901 3.5230 41 1 1.6877 -0.3710 9.0873 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001735320309.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:38 Heat of formation + Delta-G solvation = -70.919961 kcal Electronic energy + Delta-G solvation = -26229.448958 eV Core-core repulsion = 22236.383629 eV Total energy + Delta-G solvation = -3993.065329 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.37602 -41.57339 -40.46296 -38.62034 -35.93663 -35.36690 -34.61833 -33.41189 -31.62838 -30.72396 -30.23592 -27.70001 -26.96159 -25.70552 -23.86526 -23.47003 -22.07910 -21.68586 -20.47806 -19.64632 -19.51780 -18.22101 -17.79283 -17.68696 -17.21254 -16.91772 -16.76344 -16.56706 -16.06889 -15.90051 -15.71994 -15.33564 -14.97143 -14.69899 -14.59149 -14.41297 -14.36248 -14.12496 -13.77873 -13.25576 -13.20387 -13.10238 -12.91032 -12.62509 -12.49977 -12.40274 -12.23905 -11.89075 -11.77267 -11.74134 -11.40589 -11.17054 -10.98142 -10.41103 -10.33736 -10.11599 -9.77308 -8.71284 -8.37666 -6.16514 0.09533 1.06203 1.18889 1.40156 1.40278 1.50386 1.53294 1.67373 1.90069 2.18582 2.20338 2.24416 2.96148 3.05506 3.20448 3.34701 3.44316 3.78223 3.82705 3.89691 3.93423 4.07212 4.12314 4.18182 4.35007 4.38919 4.53557 4.55768 4.64753 4.66209 4.70498 4.85255 4.89686 5.04634 5.19534 5.26344 5.29964 5.38233 5.47005 6.16597 6.23896 6.29068 6.57590 7.01588 7.03183 7.07418 8.71728 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.010944 B = 0.002683 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2557.769388 B =10434.029425 C =12602.805153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.130 3.870 3 H 0.080 0.920 4 C -0.112 4.112 5 C 0.143 3.857 6 H 0.097 0.903 7 N -0.689 5.689 8 C 0.601 3.399 9 O -0.567 6.567 10 C -0.104 4.104 11 C 0.027 3.973 12 O -0.199 6.199 13 C 0.199 3.801 14 N -0.494 5.494 15 C 0.086 3.914 16 N -0.611 5.611 17 C 0.551 3.449 18 O -0.553 6.553 19 C -0.124 4.124 20 S -0.142 6.142 21 C -0.549 4.549 22 H 0.079 0.921 23 C 0.015 3.985 24 N -0.910 5.910 25 Si 0.999 3.001 26 H -0.266 1.266 27 H -0.275 1.275 28 H -0.260 1.260 29 H 0.037 0.963 30 H 0.096 0.904 31 H 0.055 0.945 32 H 0.118 0.882 33 H 0.110 0.890 34 H 0.422 0.578 35 H 0.246 0.754 36 H 0.302 0.698 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.098 0.902 40 H 0.102 0.898 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.948 -9.996 -31.348 34.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.027 3.973 3 H 0.098 0.902 4 C -0.150 4.150 5 C 0.036 3.964 6 H 0.115 0.885 7 N -0.340 5.340 8 C 0.388 3.612 9 O -0.446 6.446 10 C -0.222 4.222 11 C -0.048 4.048 12 O -0.084 6.084 13 C -0.030 4.030 14 N -0.223 5.223 15 C -0.039 4.039 16 N -0.346 5.346 17 C 0.339 3.661 18 O -0.431 6.431 19 C -0.275 4.275 20 S 0.086 5.914 21 C -0.697 4.697 22 H 0.097 0.903 23 C -0.190 4.190 24 N -0.546 5.546 25 Si 0.821 3.179 26 H -0.191 1.191 27 H -0.200 1.200 28 H -0.185 1.185 29 H 0.056 0.944 30 H 0.115 0.885 31 H 0.074 0.926 32 H 0.137 0.863 33 H 0.128 0.872 34 H 0.261 0.739 35 H 0.262 0.738 36 H 0.316 0.684 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.116 0.884 40 H 0.120 0.880 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.354 -8.260 -30.402 32.593 hybrid contribution 1.186 -1.889 0.898 2.405 sum 9.540 -10.149 -29.504 32.627 Atomic orbital electron populations 1.22151 0.94646 1.02272 1.02938 1.21765 0.95061 0.96852 0.83601 0.90239 1.22986 1.04515 0.91446 0.96055 1.21946 0.90989 0.94628 0.88791 0.88524 1.45502 1.35782 1.06277 1.46485 1.17069 0.81725 0.82459 0.79948 1.90865 1.46086 1.65676 1.41942 1.21591 1.02265 0.92940 1.05447 1.25697 0.88374 0.98346 0.92374 1.84507 1.40512 1.36761 1.46648 1.29234 0.99963 0.75066 0.98708 1.70714 1.06309 1.34507 1.10756 1.22830 0.95699 0.88579 0.96751 1.48385 1.51158 1.30853 1.04234 1.19624 0.79838 0.84094 0.82592 1.90674 1.39283 1.29738 1.83420 1.23336 1.04447 1.02748 0.96955 1.85466 1.68603 1.42048 0.95333 1.23172 1.36730 1.15974 0.93777 0.90324 1.26134 0.95751 0.97919 0.99220 1.70173 1.38854 1.31274 1.14283 0.84946 0.78109 0.78037 0.76840 1.19076 1.19982 1.18451 0.94406 0.88547 0.92587 0.86331 0.87158 0.73910 0.73819 0.68371 0.89652 0.91269 0.88413 0.88017 0.91860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.75 9.06 71.98 0.65 -3.10 16 2 C 0.13 2.85 3.49 45.34 0.16 3.00 16 3 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 4 C -0.11 -1.39 6.12 31.78 0.19 -1.20 16 5 C 0.14 2.50 3.31 46.38 0.15 2.65 16 6 H 0.10 2.00 7.73 -2.39 -0.02 1.99 16 7 N -0.69 -10.68 5.23 -439.22 -2.30 -12.98 16 8 C 0.60 12.16 7.81 86.66 0.68 12.84 16 9 O -0.57 -15.48 16.64 -4.06 -0.07 -15.54 16 10 C -0.10 -1.67 6.99 40.41 0.28 -1.39 16 11 C 0.03 0.32 11.94 67.32 0.80 1.13 16 12 O -0.20 -1.79 10.73 0.49 0.01 -1.78 16 13 C 0.20 1.16 13.19 130.52 1.72 2.88 16 14 N -0.49 -6.23 11.06 -305.16 -3.37 -9.60 16 15 C 0.09 2.01 6.38 86.86 0.55 2.56 16 16 N -0.61 -17.86 3.08 -788.06 -2.43 -20.29 16 17 C 0.55 22.32 7.65 87.66 0.67 22.99 16 18 O -0.55 -26.73 14.76 -3.02 -0.04 -26.77 16 19 C -0.12 -5.44 5.16 71.24 0.37 -5.07 16 20 S -0.14 -8.22 20.57 -56.49 -1.16 -9.38 16 21 C -0.55 -32.60 9.50 67.96 0.65 -31.95 16 22 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 23 C 0.01 0.86 5.49 84.86 0.47 1.32 16 24 N -0.91 -56.96 13.22 21.65 0.29 -56.67 16 25 Si 1.00 44.83 29.55 68.60 2.03 46.86 16 26 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 27 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 28 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 29 H 0.04 1.19 6.74 -2.39 -0.02 1.17 16 30 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 31 H 0.06 1.28 8.14 -2.39 -0.02 1.27 16 32 H 0.12 0.97 7.83 -2.39 -0.02 0.95 16 33 H 0.11 0.88 8.00 -2.39 -0.02 0.86 16 34 H 0.42 4.75 8.24 -92.71 -0.76 3.99 16 35 H 0.25 1.94 8.06 -2.91 -0.02 1.92 16 36 H 0.30 -1.70 8.06 -2.91 -0.02 -1.73 16 37 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.07 1.88 7.48 -2.38 -0.02 1.86 16 39 H 0.10 4.09 7.85 -2.39 -0.02 4.07 16 40 H 0.10 4.13 8.14 -2.40 -0.02 4.12 16 41 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -87.44 369.08 0.61 -86.83 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 0.31 Total: 12.67 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: 7.35 Total: 6.68 kcal Atomic # 7 Polarization: -91.73 SS G_CDS: -7.81 Total: -99.54 kcal Atomic # 8 Polarization: -43.99 SS G_CDS: -0.11 Total: -44.10 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Atomic # 16 Polarization: -8.22 SS G_CDS: -1.16 Total: -9.38 kcal Total: -87.44 0.61 -86.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735320309.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.910 kcal (2) G-P(sol) polarization free energy of solvation -87.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds