Wall clock time and date at job start Wed Apr 1 2020 00:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.87031 * 2 1 4 4 C 1.54320 * 109.88427 * 238.98582 * 2 1 3 5 5 C 1.55159 * 102.94309 * 218.23362 * 4 2 1 6 6 H 1.09003 * 111.00569 * 277.39164 * 5 4 2 7 7 N 1.46499 * 111.00537 * 153.57398 * 5 4 2 8 8 C 1.34777 * 119.99665 * 155.27873 * 7 5 4 9 9 O 1.21613 * 120.00251 * 359.72091 * 8 7 5 10 10 C 1.47425 * 119.99743 * 179.72398 * 8 7 5 11 11 C 1.36093 * 126.44719 * 179.97438 * 10 8 7 12 12 O 1.34262 * 106.94605 * 180.02562 * 11 10 8 13 13 C 1.34049 * 108.22525 * 0.02562 * 12 11 10 14 14 N 1.29929 * 109.24466 * 359.72230 * 13 12 11 15 15 C 1.54916 * 101.57848 * 35.49988 * 5 4 2 16 16 N 1.47024 * 110.01027 * 121.09607 * 2 1 3 17 17 C 1.34776 * 125.64755 * 298.47657 * 16 2 1 18 18 O 1.21280 * 120.00343 * 0.02562 * 17 16 2 19 19 C 1.50702 * 119.99891 * 180.02562 * 17 16 2 20 20 S 1.81000 * 109.47274 * 180.02562 * 19 17 16 21 21 C 1.76204 * 99.99982 * 179.97438 * 20 19 17 22 22 H 1.07996 * 119.99759 * 359.97438 * 21 20 19 23 23 C 1.38793 * 119.99724 * 179.97438 * 21 20 19 24 24 N 1.31632 * 120.00241 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 119.99929 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47031 * 89.99804 * 25 23 21 27 27 H 1.48500 * 109.47069 * 210.00065 * 25 23 21 28 28 H 1.48497 * 109.46834 * 329.99779 * 25 23 21 29 29 H 1.09003 * 109.47244 * 181.01774 * 1 2 3 30 30 H 1.09001 * 109.47176 * 301.01509 * 1 2 3 31 31 H 1.08998 * 109.47194 * 61.01907 * 1 2 3 32 32 H 1.08992 * 110.72587 * 99.86916 * 4 2 1 33 33 H 1.09005 * 110.71850 * 336.59516 * 4 2 1 34 34 H 0.97001 * 119.99790 * 334.99586 * 7 5 4 35 35 H 1.07998 * 126.52586 * 359.97428 * 11 10 8 36 36 H 1.08005 * 125.37276 * 180.02562 * 13 12 11 37 37 H 1.08996 * 110.36483 * 81.83368 * 15 5 4 38 38 H 1.09007 * 110.36437 * 204.15208 * 15 5 4 39 39 H 1.09003 * 109.46907 * 299.99818 * 19 17 16 40 40 H 1.08996 * 109.47274 * 59.99650 * 19 17 16 41 41 H 0.97001 * 119.99685 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 6 2.0549 -0.7477 -1.2437 5 6 3.2901 -1.5100 -0.6954 6 1 4.1667 -0.8629 -0.6648 7 7 3.5572 -2.7144 -1.4855 8 6 4.8005 -3.2334 -1.5234 9 8 5.7016 -2.6991 -0.9057 10 6 5.0680 -4.4488 -2.3136 11 6 6.2662 -5.0809 -2.4441 12 8 6.0656 -6.1381 -3.2470 13 6 4.7732 -6.1553 -3.6025 14 7 4.1627 -5.1523 -3.0462 15 6 2.8195 -1.8769 0.7343 16 7 2.0331 -0.7135 1.1830 17 6 1.8112 -0.3626 2.4652 18 8 1.1447 0.6184 2.7189 19 6 2.3913 -1.1892 3.5838 20 16 1.9193 -0.4672 5.1750 21 6 2.7074 -1.5999 6.2708 22 1 3.2700 -2.4321 5.8742 23 6 2.6051 -1.4226 7.6435 24 7 1.9198 -0.4079 8.1269 25 14 3.4412 -2.6230 8.8053 26 1 4.8186 -2.1514 9.0971 27 1 2.6682 -2.7072 10.0704 28 1 3.5011 -3.9646 8.1716 29 1 -0.3634 -1.0275 0.0183 30 1 -0.3633 0.5295 0.8807 31 1 -0.3633 0.4979 -0.8990 32 1 2.3504 -0.0433 -2.0211 33 1 1.3061 -1.4456 -1.6186 34 1 2.8385 -3.1405 -1.9781 35 1 7.2007 -4.7874 -1.9892 36 1 4.3113 -6.8899 -4.2455 37 1 2.1957 -2.7703 0.7107 38 1 3.6779 -2.0297 1.3886 39 1 2.0081 -2.2076 3.5194 40 1 3.4779 -1.2038 3.4990 41 1 1.8480 -0.2843 9.0863 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001735320312.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:49 Heat of formation + Delta-G solvation = -40.599791 kcal Electronic energy + Delta-G solvation = -26170.433774 eV Core-core repulsion = 22178.683225 eV Total energy + Delta-G solvation = -3991.750548 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.92932 -40.50589 -39.40468 -37.34310 -35.39356 -34.50070 -32.40428 -32.17611 -31.05808 -29.97374 -28.67966 -26.00582 -25.46513 -24.94730 -23.30105 -22.41491 -21.39486 -20.96602 -19.13250 -18.81646 -17.64679 -17.26312 -17.17323 -16.70216 -16.66959 -15.75368 -15.35941 -15.13841 -14.82130 -14.77264 -14.43405 -14.33771 -13.95152 -13.77905 -13.55113 -13.11135 -13.00942 -12.59549 -12.56008 -12.04717 -12.00305 -11.85288 -11.68647 -11.40466 -11.16582 -11.04036 -11.00698 -10.96630 -10.73761 -10.59351 -9.80003 -9.74953 -9.56345 -9.26392 -9.04116 -8.52195 -8.21056 -6.47468 -6.19199 -3.89547 0.62889 1.52747 2.15521 2.55101 2.87274 2.97058 3.09050 3.24562 3.28259 3.32523 3.49646 3.65573 4.12491 4.23008 4.32304 4.33713 4.40898 4.65737 4.92980 4.98398 5.00787 5.08272 5.11094 5.15958 5.32829 5.40525 5.49606 5.50533 5.60387 5.61128 5.66845 5.67514 5.92839 6.02389 6.07701 6.17807 6.26981 6.52399 6.81713 7.14082 7.62229 7.66295 7.74434 8.38060 8.57563 9.26193 10.88255 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.010981 B = 0.002645 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.308035 B =10582.476730 C =12697.765240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.138 3.862 3 H 0.079 0.921 4 C -0.133 4.133 5 C 0.131 3.869 6 H 0.112 0.888 7 N -0.702 5.702 8 C 0.604 3.396 9 O -0.528 6.528 10 C -0.077 4.077 11 C 0.022 3.978 12 O -0.199 6.199 13 C 0.181 3.819 14 N -0.467 5.467 15 C 0.092 3.908 16 N -0.621 5.621 17 C 0.552 3.448 18 O -0.511 6.511 19 C -0.148 4.148 20 S -0.060 6.060 21 C -0.534 4.534 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.868 5.868 25 Si 0.919 3.081 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.411 0.589 35 H 0.232 0.768 36 H 0.256 0.744 37 H 0.071 0.929 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.727 -10.573 -28.674 30.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.034 3.966 3 H 0.097 0.903 4 C -0.171 4.171 5 C 0.026 3.974 6 H 0.130 0.870 7 N -0.353 5.353 8 C 0.390 3.610 9 O -0.404 6.404 10 C -0.196 4.196 11 C -0.053 4.053 12 O -0.084 6.084 13 C -0.048 4.048 14 N -0.197 5.197 15 C -0.033 4.033 16 N -0.359 5.359 17 C 0.341 3.659 18 O -0.385 6.385 19 C -0.299 4.299 20 S 0.167 5.833 21 C -0.682 4.682 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.203 1.203 27 H -0.208 1.208 28 H -0.197 1.197 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.108 0.892 33 H 0.103 0.897 34 H 0.248 0.752 35 H 0.248 0.752 36 H 0.271 0.729 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.656 -8.461 -27.657 29.152 hybrid contribution 1.589 -2.479 0.229 2.953 sum 5.245 -10.940 -27.428 29.991 Atomic orbital electron populations 1.22143 0.94423 1.02391 1.03122 1.21446 0.95006 0.96517 0.83597 0.90285 1.23034 0.96629 0.99860 0.97584 1.22176 0.99178 0.86102 0.89974 0.87032 1.45620 1.10634 1.28747 1.50300 1.16761 0.83010 0.81634 0.79642 1.90885 1.44513 1.60670 1.44322 1.21746 0.91203 1.00986 1.05709 1.25393 1.01206 0.85632 0.93027 1.84471 1.31336 1.41864 1.50686 1.28153 0.77670 0.98781 1.00202 1.70744 1.32854 1.05941 1.10154 1.22613 0.96048 0.89443 0.95220 1.48494 1.53692 1.28714 1.04993 1.19994 0.79741 0.84941 0.81253 1.90694 1.38463 1.26951 1.82388 1.23531 1.03742 1.02605 0.99987 1.85356 1.69316 1.38085 0.90561 1.22859 1.38054 1.14208 0.93096 0.90955 1.24988 0.95252 0.96012 0.97333 1.70023 1.38493 1.28246 1.13563 0.86167 0.79224 0.80549 0.79557 1.20250 1.20763 1.19703 0.92553 0.90592 0.91899 0.89232 0.89693 0.75240 0.75180 0.72867 0.91106 0.89674 0.89390 0.89246 0.92210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 9.10 37.16 0.34 -1.55 16 2 C 0.14 1.62 3.45 -66.95 -0.23 1.39 16 3 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 4 C -0.13 -1.05 6.12 -24.90 -0.15 -1.20 16 5 C 0.13 1.26 3.42 -65.78 -0.23 1.04 16 6 H 0.11 1.22 7.54 -51.93 -0.39 0.83 16 7 N -0.70 -6.10 5.19 -52.79 -0.27 -6.38 16 8 C 0.60 6.35 7.81 -12.52 -0.10 6.25 16 9 O -0.53 -7.15 16.53 5.27 0.09 -7.07 16 10 C -0.08 -0.67 6.99 -83.02 -0.58 -1.25 16 11 C 0.02 0.14 11.95 29.96 0.36 0.50 16 12 O -0.20 -1.13 10.73 6.50 0.07 -1.06 16 13 C 0.18 0.82 13.19 51.96 0.69 1.50 16 14 N -0.47 -3.51 11.06 -11.48 -0.13 -3.63 16 15 C 0.09 1.11 6.39 -2.53 -0.02 1.09 16 16 N -0.62 -9.13 3.07 -163.01 -0.50 -9.63 16 17 C 0.55 10.86 7.66 -10.98 -0.08 10.77 16 18 O -0.51 -11.79 14.91 5.56 0.08 -11.70 16 19 C -0.15 -3.16 5.16 36.01 0.19 -2.97 16 20 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 21 C -0.53 -15.52 9.50 30.94 0.29 -15.22 16 22 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 23 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 24 N -0.87 -26.50 13.22 55.49 0.73 -25.77 16 25 Si 0.92 21.78 29.55 -169.99 -5.02 16.76 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 28 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 1.14 6.91 -51.93 -0.36 0.78 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.56 7.71 -51.93 -0.40 0.16 16 34 H 0.41 2.91 8.30 -40.82 -0.34 2.57 16 35 H 0.23 1.01 8.06 -52.49 -0.42 0.58 16 36 H 0.26 -0.14 8.06 -52.48 -0.42 -0.56 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.08 1.13 7.48 -51.93 -0.39 0.74 16 39 H 0.09 1.76 8.14 -51.91 -0.42 1.34 16 40 H 0.09 1.81 7.85 -51.92 -0.41 1.40 16 41 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 369.27 15.07 5.56 5.56 Total: -1.00 -37.96 369.27 -6.43 -44.39 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -5.21 Total: 0.04 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: 0.38 Total: 2.37 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: -0.17 Total: -45.42 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: 0.24 Total: -19.83 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -37.96 -6.43 -44.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735320312.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.792 kcal (2) G-P(sol) polarization free energy of solvation -37.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds