Wall clock time and date at job start Wed Apr 1 2020 00:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.87031 * 2 1 4 4 C 1.54320 * 109.88427 * 238.98582 * 2 1 3 5 5 C 1.55159 * 102.94309 * 218.23362 * 4 2 1 6 6 H 1.09003 * 111.00569 * 277.39164 * 5 4 2 7 7 N 1.46499 * 111.00537 * 153.57398 * 5 4 2 8 8 C 1.34777 * 119.99665 * 155.27873 * 7 5 4 9 9 O 1.21613 * 120.00251 * 359.72091 * 8 7 5 10 10 C 1.47425 * 119.99743 * 179.72398 * 8 7 5 11 11 C 1.36093 * 126.44719 * 179.97438 * 10 8 7 12 12 O 1.34262 * 106.94605 * 180.02562 * 11 10 8 13 13 C 1.34049 * 108.22525 * 0.02562 * 12 11 10 14 14 N 1.29929 * 109.24466 * 359.72230 * 13 12 11 15 15 C 1.54916 * 101.57848 * 35.49988 * 5 4 2 16 16 N 1.47024 * 110.01027 * 121.09607 * 2 1 3 17 17 C 1.34776 * 125.64755 * 298.47657 * 16 2 1 18 18 O 1.21280 * 120.00343 * 0.02562 * 17 16 2 19 19 C 1.50702 * 119.99891 * 180.02562 * 17 16 2 20 20 S 1.81000 * 109.47274 * 180.02562 * 19 17 16 21 21 C 1.76204 * 99.99982 * 179.97438 * 20 19 17 22 22 H 1.07996 * 119.99759 * 359.97438 * 21 20 19 23 23 C 1.38793 * 119.99724 * 179.97438 * 21 20 19 24 24 N 1.31632 * 120.00241 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 119.99929 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47031 * 89.99804 * 25 23 21 27 27 H 1.48500 * 109.47069 * 210.00065 * 25 23 21 28 28 H 1.48497 * 109.46834 * 329.99779 * 25 23 21 29 29 H 1.09003 * 109.47244 * 181.01774 * 1 2 3 30 30 H 1.09001 * 109.47176 * 301.01509 * 1 2 3 31 31 H 1.08998 * 109.47194 * 61.01907 * 1 2 3 32 32 H 1.08992 * 110.72587 * 99.86916 * 4 2 1 33 33 H 1.09005 * 110.71850 * 336.59516 * 4 2 1 34 34 H 0.97001 * 119.99790 * 334.99586 * 7 5 4 35 35 H 1.07998 * 126.52586 * 359.97428 * 11 10 8 36 36 H 1.08005 * 125.37276 * 180.02562 * 13 12 11 37 37 H 1.08996 * 110.36483 * 81.83368 * 15 5 4 38 38 H 1.09007 * 110.36437 * 204.15208 * 15 5 4 39 39 H 1.09003 * 109.46907 * 299.99818 * 19 17 16 40 40 H 1.08996 * 109.47274 * 59.99650 * 19 17 16 41 41 H 0.97001 * 119.99685 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 6 2.0549 -0.7477 -1.2437 5 6 3.2901 -1.5100 -0.6954 6 1 4.1667 -0.8629 -0.6648 7 7 3.5572 -2.7144 -1.4855 8 6 4.8005 -3.2334 -1.5234 9 8 5.7016 -2.6991 -0.9057 10 6 5.0680 -4.4488 -2.3136 11 6 6.2662 -5.0809 -2.4441 12 8 6.0656 -6.1381 -3.2470 13 6 4.7732 -6.1553 -3.6025 14 7 4.1627 -5.1523 -3.0462 15 6 2.8195 -1.8769 0.7343 16 7 2.0331 -0.7135 1.1830 17 6 1.8112 -0.3626 2.4652 18 8 1.1447 0.6184 2.7189 19 6 2.3913 -1.1892 3.5838 20 16 1.9193 -0.4672 5.1750 21 6 2.7074 -1.5999 6.2708 22 1 3.2700 -2.4321 5.8742 23 6 2.6051 -1.4226 7.6435 24 7 1.9198 -0.4079 8.1269 25 14 3.4412 -2.6230 8.8053 26 1 4.8186 -2.1514 9.0971 27 1 2.6682 -2.7072 10.0704 28 1 3.5011 -3.9646 8.1716 29 1 -0.3634 -1.0275 0.0183 30 1 -0.3633 0.5295 0.8807 31 1 -0.3633 0.4979 -0.8990 32 1 2.3504 -0.0433 -2.0211 33 1 1.3061 -1.4456 -1.6186 34 1 2.8385 -3.1405 -1.9781 35 1 7.2007 -4.7874 -1.9892 36 1 4.3113 -6.8899 -4.2455 37 1 2.1957 -2.7703 0.7107 38 1 3.6779 -2.0297 1.3886 39 1 2.0081 -2.2076 3.5194 40 1 3.4779 -1.2038 3.4990 41 1 1.8480 -0.2843 9.0863 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001735320312.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:48 Heat of formation + Delta-G solvation = -71.477963 kcal Electronic energy + Delta-G solvation = -26171.772752 eV Core-core repulsion = 22178.683225 eV Total energy + Delta-G solvation = -3993.089526 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.37423 -41.54738 -40.46684 -38.60903 -35.93684 -35.37929 -34.61652 -33.38971 -31.66772 -30.81005 -30.21655 -27.69848 -26.93639 -25.68246 -23.78265 -23.36114 -22.24222 -21.71815 -20.40027 -19.60638 -19.49402 -18.23246 -17.85148 -17.67740 -17.39548 -16.91646 -16.77974 -16.48646 -16.10847 -15.87809 -15.75523 -15.22961 -14.97213 -14.76281 -14.53987 -14.39223 -14.34566 -14.13125 -13.62380 -13.35891 -13.19659 -13.02193 -12.91212 -12.66955 -12.59486 -12.40575 -12.10468 -11.91401 -11.82948 -11.75996 -11.41961 -11.17077 -10.97788 -10.40918 -10.33314 -10.11392 -9.76748 -8.71097 -8.37490 -6.16379 0.09456 1.06086 1.19075 1.40146 1.40749 1.50712 1.53031 1.67426 1.89999 2.18445 2.20388 2.24548 2.96370 3.05850 3.20794 3.36633 3.44417 3.78712 3.82163 3.89504 3.90861 4.06795 4.14353 4.18443 4.35490 4.39429 4.53677 4.55784 4.64527 4.68594 4.70882 4.84532 4.86281 5.08583 5.19449 5.23608 5.33421 5.38379 5.45058 6.16760 6.23835 6.29415 6.57514 7.01192 7.03385 7.07527 8.71875 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.010981 B = 0.002645 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.308035 B =10582.476730 C =12697.765240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.129 3.871 3 H 0.072 0.928 4 C -0.112 4.112 5 C 0.140 3.860 6 H 0.099 0.901 7 N -0.688 5.688 8 C 0.602 3.398 9 O -0.567 6.567 10 C -0.104 4.104 11 C 0.027 3.973 12 O -0.199 6.199 13 C 0.199 3.801 14 N -0.494 5.494 15 C 0.086 3.914 16 N -0.611 5.611 17 C 0.550 3.450 18 O -0.554 6.554 19 C -0.124 4.124 20 S -0.143 6.143 21 C -0.548 4.548 22 H 0.079 0.921 23 C 0.014 3.986 24 N -0.910 5.910 25 Si 0.999 3.001 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.259 1.259 29 H 0.062 0.938 30 H 0.035 0.965 31 H 0.095 0.905 32 H 0.116 0.884 33 H 0.110 0.890 34 H 0.422 0.578 35 H 0.246 0.754 36 H 0.301 0.699 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.394 -13.252 -31.299 34.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.026 3.974 3 H 0.090 0.910 4 C -0.150 4.150 5 C 0.034 3.966 6 H 0.117 0.883 7 N -0.340 5.340 8 C 0.389 3.611 9 O -0.446 6.446 10 C -0.223 4.223 11 C -0.047 4.047 12 O -0.084 6.084 13 C -0.030 4.030 14 N -0.223 5.223 15 C -0.038 4.038 16 N -0.346 5.346 17 C 0.338 3.662 18 O -0.432 6.432 19 C -0.275 4.275 20 S 0.085 5.915 21 C -0.696 4.696 22 H 0.097 0.903 23 C -0.190 4.190 24 N -0.546 5.546 25 Si 0.821 3.179 26 H -0.193 1.193 27 H -0.200 1.200 28 H -0.183 1.183 29 H 0.081 0.919 30 H 0.054 0.946 31 H 0.113 0.887 32 H 0.134 0.866 33 H 0.128 0.872 34 H 0.260 0.740 35 H 0.262 0.738 36 H 0.316 0.684 37 H 0.104 0.896 38 H 0.089 0.911 39 H 0.120 0.880 40 H 0.117 0.883 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.304 -11.164 -30.355 32.628 hybrid contribution 1.383 -1.708 0.865 2.361 sum 5.687 -12.872 -29.489 32.675 Atomic orbital electron populations 1.22090 0.94071 1.02560 1.02782 1.21767 0.95360 0.96617 0.83674 0.90992 1.22998 0.95908 1.00135 0.95958 1.21964 0.99460 0.86428 0.88731 0.88274 1.45482 1.10575 1.28227 1.49688 1.17063 0.82882 0.81944 0.79229 1.90862 1.45653 1.61994 1.46113 1.21591 0.92420 1.01187 1.07073 1.25705 1.01276 0.85322 0.92435 1.84512 1.32058 1.41400 1.50461 1.29228 0.76919 0.98128 0.98692 1.70712 1.33233 1.07126 1.11239 1.22823 0.95491 0.88912 0.96607 1.48382 1.52717 1.29308 1.04214 1.19636 0.79626 0.84316 0.82588 1.90677 1.40546 1.28646 1.83351 1.23335 1.04310 1.02907 0.96914 1.85481 1.70409 1.40279 0.95371 1.23171 1.38303 1.14359 0.93778 0.90280 1.26134 0.95710 0.97990 0.99205 1.70178 1.39928 1.30315 1.14183 0.84945 0.78069 0.78066 0.76847 1.19263 1.19950 1.18318 0.91929 0.94619 0.88666 0.86569 0.87200 0.73956 0.73772 0.68394 0.89596 0.91102 0.87998 0.88290 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.45 9.10 71.98 0.66 -2.79 16 2 C 0.13 2.83 3.45 45.34 0.16 2.99 16 3 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 4 C -0.11 -1.42 6.12 31.78 0.19 -1.22 16 5 C 0.14 2.45 3.42 46.39 0.16 2.61 16 6 H 0.10 2.07 7.54 -2.39 -0.02 2.05 16 7 N -0.69 -10.65 5.19 -439.19 -2.28 -12.93 16 8 C 0.60 12.07 7.81 86.66 0.68 12.75 16 9 O -0.57 -15.33 16.53 -4.07 -0.07 -15.40 16 10 C -0.10 -1.66 6.99 40.41 0.28 -1.38 16 11 C 0.03 0.32 11.95 67.32 0.80 1.13 16 12 O -0.20 -1.76 10.73 0.34 0.00 -1.76 16 13 C 0.20 1.15 13.19 130.52 1.72 2.87 16 14 N -0.49 -6.22 11.06 -305.15 -3.37 -9.59 16 15 C 0.09 1.98 6.39 86.86 0.55 2.53 16 16 N -0.61 -17.77 3.07 -788.05 -2.42 -20.19 16 17 C 0.55 22.24 7.66 87.66 0.67 22.91 16 18 O -0.55 -26.80 14.91 -3.03 -0.05 -26.84 16 19 C -0.12 -5.39 5.16 71.24 0.37 -5.03 16 20 S -0.14 -8.25 20.57 -56.49 -1.16 -9.41 16 21 C -0.55 -32.47 9.50 67.95 0.65 -31.82 16 22 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 23 C 0.01 0.85 5.49 84.86 0.47 1.31 16 24 N -0.91 -56.91 13.22 21.65 0.29 -56.63 16 25 Si 1.00 44.73 29.55 68.60 2.03 46.75 16 26 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 27 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 28 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 29 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.03 1.08 6.91 -2.39 -0.02 1.07 16 31 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.11 0.93 7.71 -2.38 -0.02 0.91 16 34 H 0.42 4.81 8.30 -92.71 -0.77 4.04 16 35 H 0.25 1.86 8.06 -2.91 -0.02 1.84 16 36 H 0.30 -1.70 8.06 -2.91 -0.02 -1.72 16 37 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.07 1.86 7.48 -2.38 -0.02 1.84 16 39 H 0.10 4.11 8.14 -2.39 -0.02 4.09 16 40 H 0.10 4.09 7.85 -2.40 -0.02 4.07 16 41 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -87.29 369.27 0.63 -86.65 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 0.31 Total: 12.48 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: 7.36 Total: 6.87 kcal Atomic # 7 Polarization: -91.55 SS G_CDS: -7.79 Total: -99.34 kcal Atomic # 8 Polarization: -43.89 SS G_CDS: -0.11 Total: -44.00 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Atomic # 16 Polarization: -8.25 SS G_CDS: -1.16 Total: -9.41 kcal Total: -87.29 0.63 -86.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735320312.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.176 kcal (2) G-P(sol) polarization free energy of solvation -87.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds