Wall clock time and date at job start Tue Mar 31 2020 22:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30015 * 127.33261 * 2 1 4 4 O 1.20659 * 112.29704 * 180.30162 * 3 2 1 5 5 C 1.33490 * 113.16062 * 359.71953 * 4 3 2 6 6 C 1.37362 * 106.34050 * 359.97438 * 5 4 3 7 7 C 1.47395 * 128.56490 * 179.97438 * 6 5 4 8 8 O 1.21610 * 120.00180 * 180.02562 * 7 6 5 9 9 N 1.34776 * 119.99780 * 0.03338 * 7 6 5 10 10 C 1.46507 * 119.99683 * 184.75972 * 9 7 6 11 11 C 1.52991 * 115.56383 * 270.31132 * 10 9 7 12 12 N 1.46496 * 109.47226 * 324.99912 * 11 10 9 13 13 C 1.34778 * 120.00367 * 174.88435 * 12 11 10 14 14 O 1.21284 * 119.99458 * 359.97438 * 13 12 11 15 15 C 1.50699 * 120.00084 * 179.97438 * 13 12 11 16 16 S 1.81001 * 109.46921 * 179.97438 * 15 13 12 17 17 C 1.76193 * 100.00103 * 179.97438 * 16 15 13 18 18 H 1.08008 * 120.00066 * 0.02562 * 17 16 15 19 19 C 1.38798 * 120.00232 * 180.02562 * 17 16 15 20 20 N 1.31633 * 119.99965 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00248 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46847 * 59.99990 * 21 19 17 23 23 H 1.48497 * 109.47169 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47108 * 300.00165 * 21 19 17 25 25 C 1.53003 * 117.49616 * 56.00661 * 10 9 7 26 26 C 1.52995 * 60.03548 * 107.47304 * 25 10 9 27 27 H 1.08992 * 109.46898 * 270.13944 * 1 2 3 28 28 H 1.09000 * 109.47347 * 30.14026 * 1 2 3 29 29 H 1.09003 * 109.46479 * 150.14192 * 1 2 3 30 30 H 1.08000 * 126.82951 * 179.97438 * 5 4 3 31 31 H 0.96996 * 120.00255 * 4.75440 * 9 7 6 32 32 H 1.08997 * 109.47207 * 84.99849 * 11 10 9 33 33 H 1.08997 * 109.46916 * 204.99678 * 11 10 9 34 34 H 0.97001 * 120.00303 * 354.87935 * 12 11 10 35 35 H 1.09000 * 109.47186 * 299.99310 * 15 13 12 36 36 H 1.09002 * 109.47487 * 60.00168 * 15 13 12 37 37 H 0.96999 * 119.99893 * 180.02562 * 20 19 17 38 38 H 1.09005 * 117.49447 * 214.97749 * 25 10 9 39 39 H 1.09000 * 117.49773 * 359.96846 * 25 10 9 40 40 H 1.08996 * 117.50211 * 107.49522 * 26 25 10 41 41 H 1.09004 * 117.49700 * 252.52347 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4608 0.7208 -0.0059 5 6 3.6495 -0.6007 -0.0049 6 6 2.3992 -1.1696 0.0034 7 6 2.0402 -2.5992 0.0073 8 8 0.8707 -2.9324 0.0143 9 7 3.0081 -3.5370 0.0032 10 6 2.6537 -4.9550 -0.0982 11 6 2.4146 -5.6725 1.2317 12 7 3.3245 -5.1357 2.2466 13 6 3.2241 -5.5461 3.5265 14 8 2.3801 -6.3595 3.8379 15 6 4.1604 -4.9943 4.5704 16 16 3.7758 -5.7336 6.1771 17 6 4.9851 -4.9348 7.1789 18 1 5.6706 -4.2269 6.7367 19 6 5.0570 -5.2152 8.5364 20 7 4.2219 -6.0783 9.0753 21 14 6.3387 -4.3677 9.5987 22 1 6.1317 -2.8981 9.5464 23 1 6.2069 -4.8360 11.0017 24 1 7.6959 -4.6947 9.0925 25 6 1.8064 -5.3873 -1.2966 26 6 3.2883 -5.7625 -1.2334 27 1 -0.3633 0.0025 1.0276 28 1 -0.3634 0.8887 -0.5160 29 1 -0.3632 -0.8913 -0.5117 30 1 4.5968 -1.1194 -0.0096 31 1 3.9393 -3.2733 0.0673 32 1 1.3836 -5.5159 1.5488 33 1 2.5983 -6.7396 1.1069 34 1 3.9993 -4.4849 1.9976 35 1 5.1888 -5.2315 4.2978 36 1 4.0407 -3.9126 4.6306 37 1 4.2719 -6.2740 10.0240 38 1 1.0785 -6.1830 -1.1374 39 1 1.5122 -4.6167 -2.0092 40 1 3.5355 -6.8049 -1.0326 41 1 3.9692 -5.2384 -1.9041 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001738729627.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:05 Heat of formation + Delta-G solvation = 18.285474 kcal Electronic energy + Delta-G solvation = -26230.395473 eV Core-core repulsion = 22241.198381 eV Total energy + Delta-G solvation = -3989.197092 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.31570 -40.52609 -39.05268 -37.65513 -34.82173 -34.01227 -33.79727 -32.44326 -32.01541 -29.80900 -29.06015 -26.53899 -25.48312 -25.26685 -23.05587 -21.78076 -21.73094 -20.40016 -19.96721 -18.75873 -18.12629 -17.94595 -17.13618 -16.82592 -16.37215 -15.80866 -15.46121 -15.09299 -15.01604 -14.81702 -14.45553 -14.14597 -13.90821 -13.59479 -13.49955 -13.40077 -13.22553 -12.87005 -12.72082 -12.57028 -11.97519 -11.83949 -11.69124 -11.35000 -11.06394 -11.05270 -10.79273 -10.65114 -10.34510 -10.28808 -10.19447 -9.85515 -9.64657 -9.42930 -9.07918 -8.91436 -8.25888 -6.51788 -6.22917 -3.93873 0.60528 1.41568 2.28798 2.70040 2.79166 2.97719 3.06172 3.21295 3.22138 3.27117 3.32032 3.62089 3.68041 3.86132 4.18880 4.21064 4.34516 4.39424 4.44628 4.64232 4.89653 5.06758 5.12076 5.15455 5.20790 5.22018 5.25627 5.39174 5.43944 5.51848 5.60032 5.68687 5.76944 5.81702 5.85348 6.03842 6.09032 6.54688 6.92949 7.57257 7.63884 7.73040 7.80705 8.33162 8.57115 9.22087 10.84446 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.010758 B = 0.002753 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2602.038389 B =10169.788470 C =11859.694084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.073 3.927 3 N -0.358 5.358 4 O 0.100 5.900 5 C -0.004 4.004 6 C -0.255 4.255 7 C 0.601 3.399 8 O -0.509 6.509 9 N -0.696 5.696 10 C 0.083 3.917 11 C 0.154 3.846 12 N -0.733 5.733 13 C 0.531 3.469 14 O -0.515 6.515 15 C -0.153 4.153 16 S -0.058 6.058 17 C -0.537 4.537 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C -0.146 4.146 26 C -0.168 4.168 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.226 0.774 31 H 0.401 0.599 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.393 0.607 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.269 0.731 38 H 0.108 0.892 39 H 0.101 0.899 40 H 0.110 0.890 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.279 8.396 -25.896 27.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.090 4.090 3 N -0.066 5.066 4 O 0.041 5.959 5 C -0.087 4.087 6 C -0.263 4.263 7 C 0.387 3.613 8 O -0.384 6.384 9 N -0.348 5.348 10 C -0.004 4.004 11 C 0.028 3.972 12 N -0.388 5.388 13 C 0.317 3.683 14 O -0.389 6.389 15 C -0.303 4.303 16 S 0.168 5.832 17 C -0.685 4.685 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.184 4.184 26 C -0.206 4.206 27 H 0.105 0.895 28 H 0.097 0.903 29 H 0.114 0.886 30 H 0.242 0.758 31 H 0.236 0.764 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.227 0.773 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.079 0.921 38 H 0.127 0.873 39 H 0.119 0.881 40 H 0.129 0.871 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.253 8.019 -25.206 26.546 hybrid contribution 2.728 1.152 0.293 2.976 sum 0.475 9.171 -24.912 26.551 Atomic orbital electron populations 1.20304 0.84715 1.04375 1.04275 1.24906 0.99083 0.86135 0.98842 1.73719 0.89168 1.23483 1.20211 1.84595 1.21653 1.22883 1.66807 1.26432 1.00170 0.84346 0.97702 1.22309 0.92992 0.95437 1.15535 1.16814 0.85513 0.82840 0.76092 1.90829 1.17982 1.81650 1.47947 1.45022 1.09205 1.04505 1.76066 1.20844 1.07415 0.80806 0.91345 1.21014 0.95270 0.96710 0.84166 1.45813 1.37586 1.47337 1.08079 1.20312 0.84511 0.81305 0.82123 1.90714 1.35544 1.32423 1.80185 1.23519 1.01060 1.04385 1.01368 1.85426 1.46971 1.56962 0.93791 1.22822 1.20160 1.29865 0.95702 0.91007 1.24991 0.96443 0.95137 0.96968 1.70007 1.35508 1.31830 1.12897 0.86227 0.80876 0.79575 0.78840 1.19940 1.20785 1.19925 1.23200 0.93955 1.03243 0.97981 1.23552 0.96715 1.00973 0.99361 0.89461 0.90349 0.88583 0.75797 0.76392 0.90297 0.90455 0.77331 0.89241 0.89401 0.92094 0.87316 0.88060 0.87146 0.88073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 10.14 36.01 0.37 -0.34 16 2 C 0.07 0.75 7.58 -79.76 -0.60 0.15 16 3 N -0.36 -3.83 12.01 34.78 0.42 -3.42 16 4 O 0.10 0.85 11.06 18.66 0.21 1.06 16 5 C 0.00 -0.02 11.85 30.41 0.36 0.34 16 6 C -0.26 -2.26 6.47 -102.89 -0.67 -2.92 16 7 C 0.60 5.96 7.66 -12.53 -0.10 5.86 16 8 O -0.51 -6.82 15.08 5.27 0.08 -6.74 16 9 N -0.70 -4.88 4.48 -48.64 -0.22 -5.10 16 10 C 0.08 0.67 2.16 -131.78 -0.28 0.39 16 11 C 0.15 1.77 5.90 -4.05 -0.02 1.74 16 12 N -0.73 -9.36 5.40 -60.30 -0.33 -9.68 16 13 C 0.53 9.78 7.85 -10.99 -0.09 9.69 16 14 O -0.51 -11.69 15.86 5.55 0.09 -11.60 16 15 C -0.15 -3.02 6.16 36.01 0.22 -2.80 16 16 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 17 C -0.54 -15.21 9.50 30.94 0.29 -14.92 16 18 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.12 13.22 55.49 0.73 -25.39 16 21 Si 0.92 21.26 29.55 -169.99 -5.02 16.24 16 22 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 C -0.15 -1.08 9.22 -26.73 -0.25 -1.33 16 26 C -0.17 -0.94 10.11 -26.69 -0.27 -1.21 16 27 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.10 0.89 7.12 -51.93 -0.37 0.52 16 30 H 0.23 0.10 7.69 -52.49 -0.40 -0.30 16 31 H 0.40 1.46 7.87 -40.82 -0.32 1.14 16 32 H 0.08 1.13 8.13 -51.93 -0.42 0.70 16 33 H 0.08 0.86 7.91 -51.93 -0.41 0.45 16 34 H 0.39 3.74 7.64 -40.82 -0.31 3.43 16 35 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 36 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 37 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 38 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.11 0.57 8.05 -51.93 -0.42 0.15 16 41 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 376.16 15.07 5.67 5.67 Total: -1.00 -38.38 376.16 -6.88 -45.25 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -5.16 Total: 0.83 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -1.13 Total: -3.34 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: 0.61 Total: -43.58 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: 0.37 Total: -17.29 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -38.38 -6.88 -45.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738729627.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.540 kcal (2) G-P(sol) polarization free energy of solvation -38.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds