Wall clock time and date at job start Wed Apr 1 2020 00:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.99530 * 2 1 4 4 C 1.54332 * 109.99122 * 238.96316 * 2 1 3 5 5 H 1.08997 * 111.00275 * 100.12399 * 4 2 1 6 6 N 1.46504 * 110.51594 * 336.97232 * 4 2 1 7 7 C 1.34768 * 119.99853 * 97.42093 * 6 4 2 8 8 O 1.21280 * 120.00080 * 0.02562 * 7 6 4 9 9 C 1.50700 * 120.00129 * 179.97438 * 7 6 4 10 10 S 1.80999 * 109.47258 * 179.97438 * 9 7 6 11 11 C 1.76200 * 100.00099 * 180.02562 * 10 9 7 12 12 H 1.08005 * 119.99967 * 0.02562 * 11 10 9 13 13 C 1.38802 * 120.00262 * 180.02562 * 11 10 9 14 14 N 1.31627 * 119.99542 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00114 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47058 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.46812 * 120.00258 * 15 13 11 18 18 H 1.48501 * 109.47230 * 240.00403 * 15 13 11 19 19 C 1.55157 * 103.01896 * 218.66402 * 4 2 1 20 20 C 1.54912 * 101.58351 * 35.30382 * 19 4 2 21 21 N 1.47021 * 109.88331 * 121.08948 * 2 1 3 22 22 C 1.34773 * 125.65252 * 298.39979 * 21 2 1 23 23 O 1.21688 * 119.99800 * 359.71339 * 22 21 2 24 24 C 1.46721 * 120.00276 * 179.43901 * 22 21 2 25 25 C 1.36343 * 126.64531 * 180.27264 * 24 22 21 26 26 N 1.33692 * 107.44941 * 180.02562 * 25 24 22 27 27 C 1.30617 * 108.99936 * 359.97438 * 26 25 24 28 28 O 1.33660 * 109.14975 * 359.73064 * 27 26 25 29 29 H 1.08997 * 109.46828 * 304.39482 * 1 2 3 30 30 H 1.08996 * 109.46880 * 64.39411 * 1 2 3 31 31 H 1.09000 * 109.46816 * 184.39994 * 1 2 3 32 32 H 0.96996 * 119.99862 * 277.42301 * 6 4 2 33 33 H 1.08994 * 109.47328 * 300.00748 * 9 7 6 34 34 H 1.09006 * 109.46920 * 60.00607 * 9 7 6 35 35 H 0.97003 * 119.99494 * 180.02562 * 14 13 11 36 36 H 1.08998 * 111.00702 * 277.23291 * 19 4 2 37 37 H 1.08999 * 111.04262 * 153.39165 * 19 4 2 38 38 H 1.09002 * 110.37097 * 204.15052 * 20 19 4 39 39 H 1.09001 * 110.45666 * 81.87863 * 20 19 4 40 40 H 1.07995 * 126.27294 * 0.03715 * 25 24 22 41 41 H 1.07998 * 125.42272 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0577 -0.7478 -1.2427 5 1 2.3593 -0.0472 -2.0213 6 7 1.0465 -1.6790 -1.7493 7 6 0.2500 -1.3166 -2.7742 8 8 0.3705 -0.2198 -3.2774 9 6 -0.7898 -2.2747 -3.2957 10 16 -1.6915 -1.5018 -4.6616 11 6 -2.8086 -2.8029 -5.0660 12 1 -2.7827 -3.7290 -4.5108 13 6 -3.7220 -2.6379 -6.0980 14 7 -3.7531 -1.5095 -6.7750 15 14 -4.9068 -4.0171 -6.5262 16 1 -4.6701 -5.1715 -5.6225 17 1 -6.3030 -3.5389 -6.3623 18 1 -4.6894 -4.4372 -7.9339 19 6 3.2864 -1.5183 -0.6914 20 6 2.8100 -1.8824 0.7369 21 7 2.0301 -0.7139 1.1840 22 6 1.8074 -0.3619 2.4657 23 8 1.1453 0.6272 2.7188 24 6 2.3583 -1.1746 3.5560 25 6 2.2137 -0.9484 4.8928 26 7 2.8691 -1.9195 5.5369 27 6 3.4047 -2.7254 4.6596 28 8 3.1032 -2.2975 3.4297 29 1 -0.3633 0.5805 0.8480 30 1 -0.3633 0.4441 -0.9267 31 1 -0.3633 -1.0246 0.0788 32 1 0.9504 -2.5564 -1.3470 33 1 -0.3020 -3.1829 -3.6496 34 1 -1.4871 -2.5248 -2.4961 35 1 -4.3917 -1.3940 -7.4960 36 1 4.1670 -0.8768 -0.6579 37 1 3.4815 -2.4156 -1.2788 38 1 3.6657 -2.0411 1.3934 39 1 2.1808 -2.7721 0.7134 40 1 1.6693 -0.1342 5.3478 41 1 3.9938 -3.6004 4.8911 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001756569979.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:25 Heat of formation + Delta-G solvation = -32.362835 kcal Electronic energy + Delta-G solvation = -26694.961677 eV Core-core repulsion = 22703.568310 eV Total energy + Delta-G solvation = -3991.393367 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.90192 -40.84584 -39.23771 -37.68332 -35.44701 -34.08422 -32.46186 -31.85386 -31.53034 -30.42441 -28.79674 -25.99683 -25.48057 -24.93143 -23.24515 -22.73812 -21.49645 -20.71262 -19.81154 -18.21458 -17.91342 -17.47043 -17.30536 -16.92882 -16.26782 -15.65700 -15.53732 -15.39291 -14.83480 -14.82078 -14.38421 -14.16686 -14.06558 -13.75456 -13.48307 -13.44834 -13.20669 -12.64519 -12.46217 -12.08213 -11.99763 -11.82915 -11.68762 -11.54836 -11.25430 -11.14965 -11.09452 -11.05426 -10.78605 -10.57082 -9.84316 -9.64260 -9.52137 -9.15140 -9.10023 -9.00296 -8.27940 -6.53955 -6.25200 -3.95903 0.36954 1.91661 1.97566 2.55643 2.69596 2.93260 2.95956 3.19284 3.25265 3.29492 3.61671 3.63312 4.01700 4.02201 4.16941 4.41379 4.46933 4.59384 4.76946 4.95724 5.00344 5.03346 5.05078 5.10368 5.19255 5.24179 5.42001 5.45287 5.50054 5.60007 5.70131 5.71730 5.81997 5.90142 6.07574 6.10018 6.29219 6.48389 6.90436 7.07028 7.54750 7.56974 7.59255 8.31962 8.49081 9.20514 10.82241 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.021460 B = 0.002230 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.453913 B =12552.371916 C =12869.674520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.125 3.875 3 H 0.089 0.911 4 C 0.138 3.862 5 H 0.119 0.881 6 N -0.728 5.728 7 C 0.537 3.463 8 O -0.513 6.513 9 C -0.154 4.154 10 S -0.058 6.058 11 C -0.535 4.535 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 C -0.140 4.140 20 C 0.095 3.905 21 N -0.603 5.603 22 C 0.620 3.380 23 O -0.510 6.510 24 C -0.102 4.102 25 C 0.051 3.949 26 N -0.494 5.494 27 C 0.196 3.804 28 O -0.189 6.189 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.057 0.943 32 H 0.398 0.602 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.268 0.732 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.197 0.803 41 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.237 -4.398 20.501 27.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.021 3.979 3 H 0.107 0.893 4 C 0.031 3.969 5 H 0.137 0.863 6 N -0.382 5.382 7 C 0.323 3.677 8 O -0.386 6.386 9 C -0.305 4.305 10 S 0.168 5.832 11 C -0.684 4.684 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.502 5.502 15 Si 0.745 3.255 16 H -0.196 1.196 17 H -0.205 1.205 18 H -0.205 1.205 19 C -0.179 4.179 20 C -0.027 4.027 21 N -0.337 5.337 22 C 0.408 3.592 23 O -0.387 6.387 24 C -0.157 4.157 25 C -0.091 4.091 26 N -0.222 5.222 27 C -0.029 4.029 28 O -0.075 6.075 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.232 0.768 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.078 0.922 36 H 0.111 0.889 37 H 0.115 0.885 38 H 0.104 0.896 39 H 0.091 0.909 40 H 0.214 0.786 41 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 18.049 -2.010 20.278 27.222 hybrid contribution -0.934 -2.741 -0.032 2.896 sum 17.115 -4.752 20.246 26.934 Atomic orbital electron populations 1.22040 0.93339 1.02606 1.03581 1.22184 0.96127 0.96429 0.83117 0.89309 1.21901 0.87531 0.92467 0.94960 0.86328 1.45948 1.37298 1.18648 1.36324 1.20314 0.80984 0.88005 0.78353 1.90714 1.68555 1.22075 1.57274 1.23535 0.99758 1.01839 1.05351 1.85406 1.40414 1.22530 1.34825 1.22896 1.21539 1.02309 1.21621 0.90900 1.24996 0.96981 0.96500 0.95133 1.70023 1.35416 1.24117 1.20656 0.86116 0.80075 0.80951 0.78350 1.19636 1.20549 1.20548 1.23144 0.97837 1.02146 0.94751 1.22511 0.95728 0.88435 0.96075 1.48479 1.52023 1.28416 1.04745 1.15948 0.80170 0.83306 0.79820 1.90926 1.39522 1.25747 1.82457 1.23186 1.04239 0.90913 0.97364 1.23628 0.98221 0.98393 0.88898 1.70474 1.12346 1.04855 1.34504 1.28461 0.98337 0.99953 0.76147 1.84594 1.53722 1.34875 1.34304 0.91532 0.90406 0.92374 0.76781 0.89193 0.89249 0.92203 0.88922 0.88506 0.89571 0.90860 0.78586 0.72835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 8.07 37.16 0.30 -1.78 16 2 C 0.12 1.36 3.43 -66.95 -0.23 1.13 16 3 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 4 C 0.14 1.35 3.31 -66.09 -0.22 1.13 16 5 H 0.12 1.33 7.38 -51.93 -0.38 0.95 16 6 N -0.73 -8.22 3.76 -52.03 -0.20 -8.42 16 7 C 0.54 8.97 6.65 -10.99 -0.07 8.89 16 8 O -0.51 -10.55 14.96 5.56 0.08 -10.47 16 9 C -0.15 -2.91 6.16 36.01 0.22 -2.69 16 10 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 11 C -0.54 -14.94 9.50 30.94 0.29 -14.64 16 12 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 13 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 14 N -0.87 -25.81 13.22 55.49 0.73 -25.07 16 15 Si 0.92 21.14 29.55 -169.99 -5.02 16.12 16 16 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 C -0.14 -0.86 6.70 -24.58 -0.16 -1.02 16 20 C 0.10 0.62 6.10 -2.53 -0.02 0.61 16 21 N -0.60 -5.82 3.06 -164.51 -0.50 -6.33 16 22 C 0.62 7.03 7.61 -12.84 -0.10 6.93 16 23 O -0.51 -7.32 16.00 5.20 0.08 -7.24 16 24 C -0.10 -0.95 6.96 -36.84 -0.26 -1.21 16 25 C 0.05 0.47 11.66 -17.42 -0.20 0.26 16 26 N -0.49 -4.18 11.26 -14.67 -0.17 -4.35 16 27 C 0.20 1.03 13.21 52.25 0.69 1.72 16 28 O -0.19 -1.31 8.08 4.44 0.04 -1.27 16 29 H 0.07 0.94 7.01 -51.93 -0.36 0.58 16 30 H 0.08 1.20 6.96 -51.93 -0.36 0.84 16 31 H 0.06 0.75 7.54 -51.93 -0.39 0.35 16 32 H 0.40 3.50 8.65 -40.82 -0.35 3.15 16 33 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 34 H 0.09 1.58 8.14 -51.91 -0.42 1.16 16 35 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.09 0.48 6.27 -51.93 -0.33 0.16 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.20 1.56 8.06 -52.49 -0.42 1.14 16 41 H 0.26 -0.01 8.06 -52.49 -0.42 -0.44 16 LS Contribution 361.54 15.07 5.45 5.45 Total: -1.00 -36.57 361.54 -6.67 -43.24 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -5.11 Total: 0.78 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: 0.15 Total: 1.30 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: -0.13 Total: -44.17 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: 0.20 Total: -18.98 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.57 -6.67 -43.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756569979.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.880 kcal (2) G-P(sol) polarization free energy of solvation -36.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds