Wall clock time and date at job start Wed Apr 1 2020 00:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.99530 * 2 1 4 4 C 1.54332 * 109.99122 * 238.96316 * 2 1 3 5 5 H 1.08997 * 111.00275 * 100.12399 * 4 2 1 6 6 N 1.46504 * 110.51594 * 336.97232 * 4 2 1 7 7 C 1.34768 * 119.99853 * 97.42093 * 6 4 2 8 8 O 1.21280 * 120.00080 * 0.02562 * 7 6 4 9 9 C 1.50700 * 120.00129 * 179.97438 * 7 6 4 10 10 S 1.80999 * 109.47258 * 179.97438 * 9 7 6 11 11 C 1.76200 * 100.00099 * 180.02562 * 10 9 7 12 12 H 1.08005 * 119.99967 * 0.02562 * 11 10 9 13 13 C 1.38802 * 120.00262 * 180.02562 * 11 10 9 14 14 N 1.31627 * 119.99542 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00114 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47058 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.46812 * 120.00258 * 15 13 11 18 18 H 1.48501 * 109.47230 * 240.00403 * 15 13 11 19 19 C 1.55157 * 103.01896 * 218.66402 * 4 2 1 20 20 C 1.54912 * 101.58351 * 35.30382 * 19 4 2 21 21 N 1.47021 * 109.88331 * 121.08948 * 2 1 3 22 22 C 1.34773 * 125.65252 * 298.39979 * 21 2 1 23 23 O 1.21688 * 119.99800 * 359.71339 * 22 21 2 24 24 C 1.46721 * 120.00276 * 179.43901 * 22 21 2 25 25 C 1.36343 * 126.64531 * 180.27264 * 24 22 21 26 26 N 1.33692 * 107.44941 * 180.02562 * 25 24 22 27 27 C 1.30617 * 108.99936 * 359.97438 * 26 25 24 28 28 O 1.33660 * 109.14975 * 359.73064 * 27 26 25 29 29 H 1.08997 * 109.46828 * 304.39482 * 1 2 3 30 30 H 1.08996 * 109.46880 * 64.39411 * 1 2 3 31 31 H 1.09000 * 109.46816 * 184.39994 * 1 2 3 32 32 H 0.96996 * 119.99862 * 277.42301 * 6 4 2 33 33 H 1.08994 * 109.47328 * 300.00748 * 9 7 6 34 34 H 1.09006 * 109.46920 * 60.00607 * 9 7 6 35 35 H 0.97003 * 119.99494 * 180.02562 * 14 13 11 36 36 H 1.08998 * 111.00702 * 277.23291 * 19 4 2 37 37 H 1.08999 * 111.04262 * 153.39165 * 19 4 2 38 38 H 1.09002 * 110.37097 * 204.15052 * 20 19 4 39 39 H 1.09001 * 110.45666 * 81.87863 * 20 19 4 40 40 H 1.07995 * 126.27294 * 0.03715 * 25 24 22 41 41 H 1.07998 * 125.42272 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0577 -0.7478 -1.2427 5 1 2.3593 -0.0472 -2.0213 6 7 1.0465 -1.6790 -1.7493 7 6 0.2500 -1.3166 -2.7742 8 8 0.3705 -0.2198 -3.2774 9 6 -0.7898 -2.2747 -3.2957 10 16 -1.6915 -1.5018 -4.6616 11 6 -2.8086 -2.8029 -5.0660 12 1 -2.7827 -3.7290 -4.5108 13 6 -3.7220 -2.6379 -6.0980 14 7 -3.7531 -1.5095 -6.7750 15 14 -4.9068 -4.0171 -6.5262 16 1 -4.6701 -5.1715 -5.6225 17 1 -6.3030 -3.5389 -6.3623 18 1 -4.6894 -4.4372 -7.9339 19 6 3.2864 -1.5183 -0.6914 20 6 2.8100 -1.8824 0.7369 21 7 2.0301 -0.7139 1.1840 22 6 1.8074 -0.3619 2.4657 23 8 1.1453 0.6272 2.7188 24 6 2.3583 -1.1746 3.5560 25 6 2.2137 -0.9484 4.8928 26 7 2.8691 -1.9195 5.5369 27 6 3.4047 -2.7254 4.6596 28 8 3.1032 -2.2975 3.4297 29 1 -0.3633 0.5805 0.8480 30 1 -0.3633 0.4441 -0.9267 31 1 -0.3633 -1.0246 0.0788 32 1 0.9504 -2.5564 -1.3470 33 1 -0.3020 -3.1829 -3.6496 34 1 -1.4871 -2.5248 -2.4961 35 1 -4.3917 -1.3940 -7.4960 36 1 4.1670 -0.8768 -0.6579 37 1 3.4815 -2.4156 -1.2788 38 1 3.6657 -2.0411 1.3934 39 1 2.1808 -2.7721 0.7134 40 1 1.6693 -0.1342 5.3478 41 1 3.9938 -3.6004 4.8911 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001756569979.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:24 Heat of formation + Delta-G solvation = -61.518183 kcal Electronic energy + Delta-G solvation = -26696.225947 eV Core-core repulsion = 22703.568310 eV Total energy + Delta-G solvation = -3992.657638 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.45605 -41.75200 -40.37400 -38.68465 -36.04330 -35.13862 -34.57867 -32.76574 -32.39355 -31.26496 -30.03859 -27.68148 -26.81359 -25.65030 -23.78841 -23.39179 -22.47199 -21.72539 -20.66072 -19.86881 -18.82507 -18.30227 -17.91860 -17.82515 -17.49080 -16.87849 -16.68409 -16.61484 -16.36371 -15.80124 -15.38267 -15.12023 -14.99380 -14.83379 -14.64928 -14.40036 -14.26500 -14.15419 -13.59164 -13.27048 -13.15167 -12.91897 -12.72769 -12.67844 -12.57845 -12.43090 -12.24753 -12.09867 -11.88603 -11.69591 -11.42893 -11.15692 -10.94135 -10.32381 -10.25589 -10.18674 -9.81691 -8.64943 -8.34680 -6.11659 -0.25176 1.25658 1.28389 1.40873 1.41118 1.47459 1.57859 1.62085 1.88617 1.94149 2.23715 2.29015 2.99789 3.21781 3.32081 3.34622 3.37037 3.70225 3.85096 3.92573 3.97003 4.10312 4.21108 4.26953 4.32737 4.40282 4.48587 4.52035 4.53136 4.66446 4.75915 4.86009 4.98270 5.03221 5.12781 5.18878 5.22458 5.42620 5.46825 6.16992 6.20266 6.47924 6.49791 6.77340 7.07250 7.25096 8.74579 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.021460 B = 0.002230 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.453913 B =12552.371916 C =12869.674520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.127 3.873 3 H 0.081 0.919 4 C 0.137 3.863 5 H 0.105 0.895 6 N -0.701 5.701 7 C 0.542 3.458 8 O -0.558 6.558 9 C -0.131 4.131 10 S -0.150 6.150 11 C -0.544 4.544 12 H 0.082 0.918 13 C 0.012 3.988 14 N -0.911 5.911 15 Si 0.997 3.003 16 H -0.256 1.256 17 H -0.276 1.276 18 H -0.274 1.274 19 C -0.122 4.122 20 C 0.092 3.908 21 N -0.600 5.600 22 C 0.617 3.383 23 O -0.554 6.554 24 C -0.119 4.119 25 C 0.048 3.952 26 N -0.529 5.529 27 C 0.228 3.772 28 O -0.184 6.184 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.416 0.584 33 H 0.113 0.887 34 H 0.105 0.895 35 H 0.270 0.730 36 H 0.108 0.892 37 H 0.120 0.880 38 H 0.104 0.896 39 H 0.088 0.912 40 H 0.195 0.805 41 H 0.309 0.691 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.177 -8.075 21.970 30.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.023 3.977 3 H 0.099 0.901 4 C 0.031 3.969 5 H 0.123 0.877 6 N -0.355 5.355 7 C 0.328 3.672 8 O -0.435 6.435 9 C -0.282 4.282 10 S 0.078 5.922 11 C -0.692 4.692 12 H 0.100 0.900 13 C -0.192 4.192 14 N -0.548 5.548 15 Si 0.819 3.181 16 H -0.180 1.180 17 H -0.202 1.202 18 H -0.199 1.199 19 C -0.161 4.161 20 C -0.029 4.029 21 N -0.332 5.332 22 C 0.405 3.595 23 O -0.435 6.435 24 C -0.175 4.175 25 C -0.094 4.094 26 N -0.257 5.257 27 C 0.004 3.996 28 O -0.070 6.070 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.253 0.747 33 H 0.131 0.869 34 H 0.123 0.877 35 H 0.079 0.921 36 H 0.127 0.873 37 H 0.138 0.862 38 H 0.122 0.878 39 H 0.106 0.894 40 H 0.212 0.788 41 H 0.323 0.677 Dipole moment (debyes) X Y Z Total from point charges 20.036 -5.741 21.790 30.153 hybrid contribution -1.405 -1.638 -0.322 2.182 sum 18.631 -7.380 21.468 29.367 Atomic orbital electron populations 1.21905 0.95307 1.02129 1.01357 1.22017 0.94438 0.96760 0.84461 0.90125 1.21980 0.88441 0.92569 0.93890 0.87701 1.45624 1.36072 1.19509 1.34272 1.19941 0.81103 0.86844 0.79303 1.90710 1.69876 1.23715 1.59187 1.23375 0.99942 1.02271 1.02623 1.85578 1.42274 1.25196 1.39187 1.23230 1.21666 1.02470 1.21816 0.89952 1.26114 0.98957 0.99236 0.94939 1.70187 1.36562 1.26582 1.21439 0.84926 0.77142 0.77652 0.78360 1.17988 1.20173 1.19895 1.23158 0.96047 1.02734 0.94123 1.22778 0.96213 0.87465 0.96421 1.48491 1.51795 1.29053 1.03853 1.16204 0.79692 0.83031 0.80546 1.90896 1.41579 1.27740 1.83256 1.22658 1.06143 0.92207 0.96448 1.23737 0.97924 0.98588 0.89154 1.70513 1.13883 1.05732 1.35554 1.29676 0.95650 0.99434 0.74873 1.84585 1.53417 1.33954 1.35031 0.93132 0.93102 0.91967 0.74702 0.86924 0.87712 0.92052 0.87346 0.86151 0.87778 0.89431 0.78815 0.67683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.06 8.07 71.98 0.58 -3.48 16 2 C 0.13 2.74 3.43 45.35 0.16 2.90 16 3 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 4 C 0.14 2.47 3.31 46.18 0.15 2.62 16 5 H 0.11 2.30 7.38 -2.39 -0.02 2.28 16 6 N -0.70 -14.50 3.76 -436.91 -1.64 -16.14 16 7 C 0.54 17.88 6.65 87.66 0.58 18.46 16 8 O -0.56 -23.64 14.96 -3.03 -0.05 -23.69 16 9 C -0.13 -4.84 6.16 71.24 0.44 -4.41 16 10 S -0.15 -8.07 20.57 -56.49 -1.16 -9.23 16 11 C -0.54 -30.49 9.50 67.95 0.65 -29.84 16 12 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16 13 C 0.01 0.69 5.49 84.86 0.47 1.16 16 14 N -0.91 -55.55 13.22 21.65 0.29 -55.26 16 15 Si 1.00 43.17 29.55 68.60 2.03 45.20 16 16 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 17 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 18 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 19 C -0.12 -1.03 6.70 31.99 0.21 -0.82 16 20 C 0.09 0.87 6.10 86.86 0.53 1.40 16 21 N -0.60 -10.75 3.06 -792.63 -2.43 -13.17 16 22 C 0.62 13.78 7.61 86.46 0.66 14.44 16 23 O -0.55 -16.65 16.00 -4.31 -0.07 -16.72 16 24 C -0.12 -2.06 6.96 24.05 0.17 -1.90 16 25 C 0.05 0.85 11.66 83.97 0.98 1.83 16 26 N -0.53 -7.81 11.26 -315.10 -3.55 -11.36 16 27 C 0.23 1.49 13.21 130.42 1.72 3.22 16 28 O -0.18 -1.90 8.08 -7.04 -0.06 -1.96 16 29 H 0.05 1.53 7.01 -2.39 -0.02 1.51 16 30 H 0.05 1.66 6.96 -2.39 -0.02 1.64 16 31 H 0.06 1.59 7.54 -2.39 -0.02 1.57 16 32 H 0.42 5.88 8.65 -92.71 -0.80 5.08 16 33 H 0.11 3.67 8.14 -2.40 -0.02 3.65 16 34 H 0.10 3.56 8.14 -2.39 -0.02 3.54 16 35 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 36 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.10 0.70 6.27 -2.39 -0.01 0.68 16 39 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.19 3.23 8.06 -2.91 -0.02 3.21 16 41 H 0.31 -1.85 8.06 -2.91 -0.02 -1.88 16 Total: -1.00 -85.30 361.54 0.93 -84.37 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: 0.28 Total: 12.38 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: 7.29 Total: 5.57 kcal Atomic # 7 Polarization: -88.60 SS G_CDS: -7.33 Total: -95.94 kcal Atomic # 8 Polarization: -42.19 SS G_CDS: -0.17 Total: -42.37 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 16 Polarization: -8.07 SS G_CDS: -1.16 Total: -9.23 kcal Total: -85.30 0.93 -84.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756569979.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.854 kcal (2) G-P(sol) polarization free energy of solvation -85.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds