Wall clock time and date at job start Wed Apr 1 2020 00:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.87743 * 2 1 4 4 C 1.54320 * 109.88191 * 121.01987 * 2 1 3 5 5 H 1.09009 * 110.71818 * 215.76185 * 4 2 1 6 6 N 1.46505 * 110.72107 * 338.85673 * 4 2 1 7 7 C 1.34778 * 119.99792 * 202.56280 * 6 4 2 8 8 O 1.21278 * 120.00140 * 359.97438 * 7 6 4 9 9 C 1.50703 * 119.99723 * 180.02562 * 7 6 4 10 10 S 1.80993 * 109.47026 * 179.97438 * 9 7 6 11 11 C 1.76201 * 99.99993 * 179.97438 * 10 9 7 12 12 H 1.08002 * 120.00153 * 0.02562 * 11 10 9 13 13 C 1.38798 * 120.00523 * 179.97438 * 11 10 9 14 14 N 1.31634 * 119.99397 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00627 * 179.97438 * 13 11 10 16 16 H 1.48490 * 109.47339 * 180.02562 * 15 13 11 17 17 H 1.48493 * 109.47239 * 300.00544 * 15 13 11 18 18 H 1.48504 * 109.46636 * 60.00103 * 15 13 11 19 19 C 1.55154 * 103.10325 * 97.31286 * 4 2 1 20 20 C 1.55122 * 101.48609 * 35.28115 * 19 4 2 21 21 N 1.47020 * 109.88125 * 238.82661 * 2 1 3 22 22 C 1.34776 * 125.64893 * 59.56086 * 21 2 1 23 23 O 1.21685 * 120.00090 * 359.97438 * 22 21 2 24 24 C 1.46721 * 120.00097 * 180.02562 * 22 21 2 25 25 C 1.36344 * 126.64741 * 180.02562 * 24 22 21 26 26 N 1.33686 * 107.45675 * 179.97438 * 25 24 22 27 27 C 1.30621 * 108.99289 * 359.97438 * 26 25 24 28 28 O 1.33660 * 109.15638 * 359.73420 * 27 26 25 29 29 H 1.09007 * 109.47250 * 298.98713 * 1 2 3 30 30 H 1.09003 * 109.47654 * 58.97621 * 1 2 3 31 31 H 1.08993 * 109.47375 * 178.98251 * 1 2 3 32 32 H 0.96999 * 119.99489 * 22.56352 * 6 4 2 33 33 H 1.09001 * 109.47144 * 59.99673 * 9 7 6 34 34 H 1.09006 * 109.47011 * 299.99863 * 9 7 6 35 35 H 0.97005 * 119.99723 * 179.97438 * 14 13 11 36 36 H 1.09003 * 111.00698 * 153.48783 * 19 4 2 37 37 H 1.08996 * 111.00294 * 277.33678 * 19 4 2 38 38 H 1.09006 * 110.41769 * 204.29744 * 20 19 4 39 39 H 1.09000 * 110.30131 * 82.09389 * 20 19 4 40 40 H 1.08000 * 126.26953 * 0.02562 * 25 24 22 41 41 H 1.07998 * 125.41629 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7479 1.2437 5 1 2.9640 -0.2791 1.6204 6 7 1.0292 -0.7995 2.2886 7 6 1.3868 -0.9811 3.5754 8 8 2.5574 -1.1022 3.8681 9 6 0.3317 -1.0347 4.6502 10 16 1.1217 -1.2874 6.2589 11 6 -0.3009 -1.3092 7.2983 12 1 -1.2846 -1.1858 6.8699 13 6 -0.1575 -1.4861 8.6674 14 7 1.0414 -1.6370 9.1895 15 14 -1.6656 -1.5085 9.7695 16 1 -1.2455 -1.7101 11.1794 17 1 -2.3865 -0.2160 9.6483 18 1 -2.5637 -2.6168 9.3567 19 6 2.3553 -2.1691 0.6987 20 6 2.8567 -1.8508 -0.7343 21 7 2.0299 -0.7157 -1.1829 22 6 1.7753 -0.3878 -2.4652 23 8 1.0761 0.5751 -2.7196 24 6 2.3401 -1.1925 -3.5542 25 6 2.1720 -0.9849 -4.8912 26 7 2.8520 -1.9397 -5.5340 27 6 3.4258 -2.7176 -4.6555 28 8 3.1350 -2.2805 -3.4263 29 1 -0.3634 0.4980 0.8990 30 1 -0.3634 0.5296 -0.8807 31 1 -0.3634 -1.0274 -0.0182 32 1 0.0929 -0.7030 2.0543 33 1 -0.3515 -1.8595 4.4477 34 1 -0.2239 -0.0970 4.6610 35 1 1.1417 -1.7602 10.1464 36 1 3.1315 -2.6575 1.2878 37 1 1.4501 -2.7755 0.6689 38 1 2.7086 -2.7100 -1.3886 39 1 3.9093 -1.5683 -0.7127 40 1 1.5958 -0.1935 -5.3474 41 1 4.0408 -3.5750 -4.8858 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001756569980.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:27 Heat of formation + Delta-G solvation = -57.177624 kcal Electronic energy + Delta-G solvation = -26309.916535 eV Core-core repulsion = 22317.447118 eV Total energy + Delta-G solvation = -3992.469417 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.46791 -41.71546 -40.43149 -38.74997 -36.09151 -35.39706 -34.56895 -32.67937 -32.34766 -31.30343 -30.05175 -27.67120 -26.80993 -25.67677 -23.80043 -23.60775 -22.57380 -21.42369 -20.64930 -19.88511 -19.03720 -18.18148 -18.00656 -17.89052 -17.37363 -16.96829 -16.86341 -16.51326 -16.36042 -15.77452 -15.46035 -15.27772 -14.88280 -14.86861 -14.63385 -14.44331 -14.18363 -13.87061 -13.58721 -13.38839 -13.17961 -13.08720 -12.87022 -12.81439 -12.62276 -12.58197 -12.15323 -11.96550 -11.88484 -11.73355 -11.40181 -11.11755 -10.96764 -10.32446 -10.26329 -10.17197 -9.86347 -8.64297 -8.33495 -6.10776 -0.26431 1.19821 1.30559 1.39348 1.44487 1.47539 1.56442 1.59775 1.81839 1.91734 2.27079 2.31490 3.00688 3.12666 3.27342 3.32799 3.43059 3.63411 3.84623 3.85778 3.94267 4.02485 4.15579 4.21934 4.32361 4.40162 4.46769 4.50919 4.53544 4.61709 4.69896 4.84402 4.95320 4.99381 5.08133 5.20687 5.24984 5.41013 5.43302 6.10350 6.20848 6.43324 6.47346 6.74032 7.08154 7.20597 8.75175 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.034784 B = 0.001942 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.781790 B =14415.964869 C =14811.360401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.135 3.865 3 H 0.087 0.913 4 C 0.140 3.860 5 H 0.095 0.905 6 N -0.707 5.707 7 C 0.540 3.460 8 O -0.557 6.557 9 C -0.132 4.132 10 S -0.146 6.146 11 C -0.547 4.547 12 H 0.083 0.917 13 C 0.014 3.986 14 N -0.910 5.910 15 Si 0.996 3.004 16 H -0.280 1.280 17 H -0.263 1.263 18 H -0.262 1.262 19 C -0.138 4.138 20 C 0.104 3.896 21 N -0.601 5.601 22 C 0.623 3.377 23 O -0.545 6.545 24 C -0.124 4.124 25 C 0.053 3.947 26 N -0.528 5.528 27 C 0.226 3.774 28 O -0.188 6.188 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.416 0.584 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.271 0.729 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.200 0.800 41 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.462 -2.571 -28.380 28.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.032 3.968 3 H 0.105 0.895 4 C 0.034 3.966 5 H 0.113 0.887 6 N -0.364 5.364 7 C 0.326 3.674 8 O -0.434 6.434 9 C -0.283 4.283 10 S 0.081 5.919 11 C -0.695 4.695 12 H 0.101 0.899 13 C -0.191 4.191 14 N -0.547 5.547 15 Si 0.818 3.182 16 H -0.205 1.205 17 H -0.188 1.188 18 H -0.187 1.187 19 C -0.177 4.177 20 C -0.018 4.018 21 N -0.334 5.334 22 C 0.412 3.588 23 O -0.425 6.425 24 C -0.180 4.180 25 C -0.090 4.090 26 N -0.256 5.256 27 C 0.002 3.998 28 O -0.074 6.074 29 H 0.105 0.895 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.257 0.743 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.080 0.920 36 H 0.110 0.890 37 H 0.106 0.894 38 H 0.119 0.881 39 H 0.106 0.894 40 H 0.217 0.783 41 H 0.320 0.680 Dipole moment (debyes) X Y Z Total from point charges 3.189 -2.371 -28.538 28.813 hybrid contribution -2.243 0.310 1.098 2.517 sum 0.945 -2.061 -27.440 27.533 Atomic orbital electron populations 1.22150 0.93432 1.03422 1.03795 1.21663 0.96023 0.96083 0.83037 0.89514 1.21874 0.91878 0.96771 0.86045 0.88720 1.45944 1.11254 1.74464 1.04698 1.20006 0.88964 0.74933 0.83495 1.90698 1.20578 1.49593 1.82560 1.23389 1.01185 1.06792 0.96983 1.85533 1.14101 1.95127 0.97144 1.23181 0.93890 1.57601 0.94840 0.89922 1.26099 1.00316 0.93831 0.98874 1.70172 1.24232 1.47010 1.13252 0.85033 0.77293 0.79414 0.76458 1.20500 1.18777 1.18670 1.23230 1.03340 0.96406 0.94719 1.22609 0.95285 0.88789 0.95133 1.48358 1.50050 1.30839 1.04129 1.16079 0.79826 0.82820 0.80111 1.90883 1.39839 1.28737 1.83049 1.22745 1.04660 0.93873 0.96673 1.23785 0.97901 0.98308 0.88962 1.70525 1.13222 1.06439 1.35429 1.29647 0.96058 0.99171 0.74892 1.84609 1.51663 1.35975 1.35149 0.89503 0.91435 0.91082 0.74288 0.87111 0.87220 0.92029 0.89046 0.89390 0.88072 0.89437 0.78306 0.67955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.68 7.94 71.98 0.57 -2.10 16 2 C 0.14 2.35 3.48 45.34 0.16 2.51 16 3 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 4 C 0.14 2.74 3.14 46.18 0.14 2.88 16 5 H 0.09 2.19 7.62 -2.38 -0.02 2.17 16 6 N -0.71 -15.66 4.93 -436.91 -2.16 -17.82 16 7 C 0.54 18.03 7.85 87.66 0.69 18.72 16 8 O -0.56 -23.51 15.55 -3.02 -0.05 -23.56 16 9 C -0.13 -4.90 6.16 71.24 0.44 -4.46 16 10 S -0.15 -7.82 20.57 -56.49 -1.16 -8.99 16 11 C -0.55 -30.50 9.50 67.95 0.65 -29.86 16 12 H 0.08 4.26 7.80 -2.91 -0.02 4.24 16 13 C 0.01 0.77 5.49 84.86 0.47 1.23 16 14 N -0.91 -55.01 13.22 21.65 0.29 -54.73 16 15 Si 1.00 42.85 29.55 68.60 2.03 44.87 16 16 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 17 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 18 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 19 C -0.14 -2.22 6.79 32.06 0.22 -2.00 16 20 C 0.10 1.36 6.19 86.93 0.54 1.89 16 21 N -0.60 -10.22 3.08 -792.26 -2.44 -12.66 16 22 C 0.62 12.48 7.60 86.46 0.66 13.14 16 23 O -0.55 -13.94 15.80 -4.30 -0.07 -14.01 16 24 C -0.12 -2.05 6.96 24.05 0.17 -1.88 16 25 C 0.05 0.85 11.66 83.97 0.98 1.83 16 26 N -0.53 -7.57 11.26 -315.10 -3.55 -11.11 16 27 C 0.23 1.62 13.21 130.42 1.72 3.34 16 28 O -0.19 -2.12 8.07 -7.10 -0.06 -2.17 16 29 H 0.09 1.16 6.72 -2.38 -0.02 1.14 16 30 H 0.07 1.29 6.76 -2.39 -0.02 1.27 16 31 H 0.07 1.01 8.06 -2.39 -0.02 0.99 16 32 H 0.42 6.96 5.79 -92.71 -0.54 6.42 16 33 H 0.11 3.66 8.14 -2.40 -0.02 3.64 16 34 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 35 H 0.27 15.25 8.31 -92.70 -0.77 14.48 16 36 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.10 1.08 6.25 -2.38 -0.01 1.07 16 39 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.20 2.84 8.06 -2.91 -0.02 2.81 16 41 H 0.31 -1.49 8.06 -2.91 -0.02 -1.51 16 Total: -1.00 -80.89 361.60 0.77 -80.12 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 0.54 Total: 14.79 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: 7.39 Total: 5.25 kcal Atomic # 7 Polarization: -88.46 SS G_CDS: -7.86 Total: -96.32 kcal Atomic # 8 Polarization: -39.56 SS G_CDS: -0.17 Total: -39.74 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.87 kcal Atomic # 16 Polarization: -7.82 SS G_CDS: -1.16 Total: -8.99 kcal Total: -80.89 0.77 -80.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756569980.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.941 kcal (2) G-P(sol) polarization free energy of solvation -80.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds