Wall clock time and date at job start Wed Apr 1 2020 00:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.87320 * 2 1 4 4 C 1.54327 * 109.87910 * 238.98841 * 2 1 3 5 5 C 1.55165 * 102.94078 * 218.38660 * 4 2 1 6 6 H 1.08995 * 111.00547 * 153.57467 * 5 4 2 7 7 N 1.46503 * 111.00460 * 277.42885 * 5 4 2 8 8 C 1.34770 * 119.99773 * 204.99561 * 7 5 4 9 9 O 1.21277 * 120.00458 * 0.02562 * 8 7 5 10 10 C 1.50701 * 119.99953 * 179.97438 * 8 7 5 11 11 S 1.81003 * 109.47230 * 180.02562 * 10 8 7 12 12 C 1.76205 * 99.99954 * 180.02562 * 11 10 8 13 13 H 1.08003 * 119.99655 * 0.02562 * 12 11 10 14 14 C 1.38791 * 119.99881 * 179.97438 * 12 11 10 15 15 N 1.31627 * 120.00266 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99849 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46890 * 90.00604 * 16 14 12 18 18 H 1.48497 * 109.47142 * 210.00302 * 16 14 12 19 19 H 1.48502 * 109.47294 * 330.00463 * 16 14 12 20 20 C 1.54915 * 101.57980 * 35.50135 * 5 4 2 21 21 N 1.47022 * 109.88459 * 121.17816 * 2 1 3 22 22 C 1.34777 * 125.64528 * 298.31844 * 21 2 1 23 23 O 1.21614 * 120.00047 * 0.02562 * 22 21 2 24 24 C 1.47425 * 119.99429 * 179.97438 * 22 21 2 25 25 C 1.36089 * 126.44137 * 180.02562 * 24 22 21 26 26 O 1.34258 * 106.94620 * 180.02562 * 25 24 22 27 27 C 1.34048 * 108.22962 * 359.97438 * 26 25 24 28 28 N 1.29949 * 109.24035 * 359.72471 * 27 26 25 29 29 H 1.09007 * 109.47032 * 181.01536 * 1 2 3 30 30 H 1.09000 * 109.46814 * 301.01208 * 1 2 3 31 31 H 1.08998 * 109.47411 * 61.01224 * 1 2 3 32 32 H 1.08993 * 110.72079 * 336.74816 * 4 2 1 33 33 H 1.09002 * 110.72173 * 100.02653 * 4 2 1 34 34 H 0.97000 * 120.00029 * 24.99800 * 7 5 4 35 35 H 1.09002 * 109.46996 * 300.00268 * 10 8 7 36 36 H 1.08997 * 109.46923 * 59.99968 * 10 8 7 37 37 H 0.96996 * 120.00026 * 179.97438 * 15 14 12 38 38 H 1.08997 * 110.36462 * 204.15099 * 20 5 4 39 39 H 1.08999 * 110.46102 * 81.87572 * 20 5 4 40 40 H 1.08001 * 126.53345 * 359.97438 * 25 24 22 41 41 H 1.08000 * 125.38543 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7477 -1.2439 5 6 3.2876 -1.5132 -0.6947 6 1 3.4852 -2.4092 -1.2831 7 7 4.4674 -0.6458 -0.6504 8 6 5.7019 -1.1843 -0.6997 9 8 5.8362 -2.3869 -0.7811 10 6 6.9155 -0.2920 -0.6548 11 16 8.4129 -1.3054 -0.7390 12 6 9.6407 -0.0435 -0.6691 13 1 9.3462 0.9930 -0.5965 14 6 10.9863 -0.3817 -0.7062 15 7 11.3453 -1.6450 -0.7941 16 14 12.2879 0.9562 -0.6328 17 1 12.6484 1.2188 0.7836 18 1 13.4946 0.5141 -1.3768 19 1 11.7555 2.1991 -1.2468 20 6 2.8146 -1.8805 0.7340 21 7 2.0301 -0.7158 1.1829 22 6 1.8086 -0.3647 2.4651 23 8 1.1434 0.6211 2.7195 24 6 2.3719 -1.1765 3.5593 25 6 2.2312 -0.9446 4.8929 26 8 2.8993 -1.9182 5.5319 27 6 3.4380 -2.7307 4.6119 28 7 3.1250 -2.3018 3.4259 29 1 -0.3633 -1.0276 0.0182 30 1 -0.3633 0.5295 0.8808 31 1 -0.3634 0.4980 -0.8989 32 1 1.3051 -1.4436 -1.6203 33 1 2.3528 -0.0431 -2.0202 34 1 4.3601 0.3160 -0.5857 35 1 6.8935 0.3941 -1.5015 36 1 6.9136 0.2775 0.2745 37 1 12.2857 -1.8813 -0.8204 38 1 3.6717 -2.0358 1.3892 39 1 2.1892 -2.7729 0.7107 40 1 1.6867 -0.1318 5.3502 41 1 4.0338 -3.6065 4.8229 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001756583113.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:57 Heat of formation + Delta-G solvation = -37.055017 kcal Electronic energy + Delta-G solvation = -26808.707345 eV Core-core repulsion = 22817.110510 eV Total energy + Delta-G solvation = -3991.596835 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.69533 -40.59055 -39.07701 -37.55424 -35.18486 -33.96775 -32.43656 -32.08148 -30.75565 -30.52059 -28.45811 -26.15641 -25.49404 -24.92437 -23.08349 -22.38791 -21.33592 -20.31049 -19.78909 -17.99790 -17.86981 -17.22276 -16.97556 -16.71178 -16.27420 -15.63640 -15.43313 -15.12256 -14.81379 -14.79768 -14.36164 -14.15794 -13.87683 -13.69200 -13.34613 -13.27840 -12.90869 -12.62871 -12.56518 -12.24732 -11.97230 -11.73389 -11.65064 -11.52273 -11.07123 -11.04539 -11.01853 -10.77951 -10.76033 -10.35837 -9.82200 -9.50594 -9.43642 -9.12477 -9.06433 -8.69845 -8.24783 -6.50522 -6.22514 -3.92876 0.83297 1.78680 2.37558 2.68275 2.99368 3.04557 3.07489 3.21830 3.27303 3.31368 3.68840 3.71620 4.14825 4.19872 4.35084 4.52978 4.54063 4.65332 4.94044 5.05323 5.12795 5.13205 5.23394 5.26551 5.28642 5.32814 5.47622 5.53711 5.57966 5.66289 5.77472 5.83430 5.88290 5.92992 5.97399 6.13591 6.24881 6.61306 7.11873 7.26043 7.58969 7.66907 7.87175 8.34559 8.58169 9.23047 10.84887 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012297 B = 0.002878 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.518603 B = 9726.496640 C =10915.683293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.132 3.868 3 H 0.079 0.921 4 C -0.136 4.136 5 C 0.132 3.868 6 H 0.114 0.886 7 N -0.728 5.728 8 C 0.535 3.465 9 O -0.514 6.514 10 C -0.154 4.154 11 S -0.058 6.058 12 C -0.536 4.536 13 H 0.072 0.928 14 C 0.074 3.926 15 N -0.868 5.868 16 Si 0.918 3.082 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.272 1.272 20 C 0.089 3.911 21 N -0.595 5.595 22 C 0.618 3.382 23 O -0.540 6.540 24 C -0.072 4.072 25 C 0.014 3.986 26 O -0.199 6.199 27 C 0.183 3.817 28 N -0.461 5.461 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.398 0.602 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.268 0.732 38 H 0.109 0.891 39 H 0.077 0.923 40 H 0.229 0.771 41 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.918 0.962 6.727 23.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.030 3.970 3 H 0.097 0.903 4 C -0.175 4.175 5 C 0.025 3.975 6 H 0.132 0.868 7 N -0.382 5.382 8 C 0.322 3.678 9 O -0.388 6.388 10 C -0.304 4.304 11 S 0.169 5.831 12 C -0.684 4.684 13 H 0.090 0.910 14 C -0.135 4.135 15 N -0.503 5.503 16 Si 0.744 3.256 17 H -0.203 1.203 18 H -0.207 1.207 19 H -0.197 1.197 20 C -0.034 4.034 21 N -0.328 5.328 22 C 0.406 3.594 23 O -0.418 6.418 24 C -0.191 4.191 25 C -0.060 4.060 26 O -0.084 6.084 27 C -0.045 4.045 28 N -0.190 5.190 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.232 0.768 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.078 0.922 38 H 0.127 0.873 39 H 0.095 0.905 40 H 0.245 0.755 41 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -22.719 -0.941 6.217 23.573 hybrid contribution 0.552 2.906 0.823 3.070 sum -22.168 1.965 7.040 23.342 Atomic orbital electron populations 1.22139 0.94368 1.02435 1.03046 1.21631 0.94909 0.96431 0.84075 0.90283 1.23108 0.97283 1.00367 0.96695 1.22025 0.84651 0.95207 0.95599 0.86786 1.45923 1.04923 1.10055 1.77275 1.20304 0.83589 0.89107 0.74836 1.90701 1.85882 1.15001 1.47232 1.23533 0.98885 1.03140 1.04870 1.85361 0.91592 1.09890 1.96297 1.22873 0.92724 0.94183 1.58636 0.90974 1.24979 0.97834 0.96181 0.94527 1.70012 1.17432 1.16122 1.46725 0.86178 0.80145 0.80919 0.78325 1.20285 1.20734 1.19689 1.23080 0.96700 0.87465 0.96193 1.48274 1.51585 1.28641 1.04286 1.16337 0.79557 0.83034 0.80438 1.90809 1.40759 1.26953 1.83298 1.21690 1.05753 0.97627 0.94044 1.25256 0.96623 0.92730 0.91428 1.84456 1.51871 1.32152 1.39937 1.28296 0.98534 0.97069 0.80636 1.70925 1.13105 1.09681 1.25260 0.92395 0.91173 0.91464 0.88823 0.88988 0.76842 0.89229 0.89383 0.92187 0.87339 0.90517 0.75480 0.72789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 9.10 37.16 0.34 -1.02 16 2 C 0.13 1.22 3.45 -66.95 -0.23 0.99 16 3 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 4 C -0.14 -1.05 6.08 -24.89 -0.15 -1.20 16 5 C 0.13 1.44 3.43 -65.77 -0.23 1.22 16 6 H 0.11 1.36 7.54 -51.93 -0.39 0.97 16 7 N -0.73 -9.43 5.19 -51.72 -0.27 -9.70 16 8 C 0.54 9.66 7.85 -10.99 -0.09 9.57 16 9 O -0.51 -11.14 15.50 5.56 0.09 -11.06 16 10 C -0.15 -3.07 6.16 36.01 0.22 -2.85 16 11 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 12 C -0.54 -15.23 9.50 30.94 0.29 -14.93 16 13 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 14 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 15 N -0.87 -26.00 13.22 55.49 0.73 -25.27 16 16 Si 0.92 21.36 29.55 -169.99 -5.02 16.34 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 20 C 0.09 1.03 5.83 -2.53 -0.01 1.01 16 21 N -0.60 -6.75 3.06 -164.27 -0.50 -7.26 16 22 C 0.62 7.96 7.64 -12.52 -0.10 7.87 16 23 O -0.54 -7.85 15.94 5.27 0.08 -7.76 16 24 C -0.07 -0.84 6.81 -83.02 -0.57 -1.41 16 25 C 0.01 0.13 11.95 29.96 0.36 0.49 16 26 O -0.20 -1.72 10.73 6.51 0.07 -1.65 16 27 C 0.18 1.54 13.19 51.97 0.69 2.22 16 28 N -0.46 -5.32 8.44 -11.48 -0.10 -5.42 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.73 6.90 -51.93 -0.36 0.37 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.59 7.85 -51.93 -0.41 0.18 16 33 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.40 4.34 8.67 -40.82 -0.35 3.99 16 35 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 36 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 37 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.11 1.54 6.16 -51.93 -0.32 1.22 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.23 1.42 8.06 -52.49 -0.42 1.00 16 41 H 0.26 1.01 8.06 -52.49 -0.42 0.58 16 LS Contribution 366.34 15.07 5.52 5.52 Total: -1.00 -36.97 366.34 -6.36 -43.33 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -5.18 Total: 2.72 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: 0.43 Total: 3.97 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: -0.13 Total: -47.64 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: 0.24 Total: -20.47 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.97 -6.36 -43.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756583113.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.273 kcal (2) G-P(sol) polarization free energy of solvation -36.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds