Wall clock time and date at job start Tue Mar 31 2020 22:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.33692 * 126.26891 * 2 1 4 4 C 1.30618 * 108.99859 * 180.25968 * 3 2 1 5 5 O 1.33670 * 109.14889 * 359.76768 * 4 3 2 6 6 C 1.35343 * 107.68493 * 359.97438 * 5 4 3 7 7 C 1.46720 * 126.64141 * 179.97438 * 6 5 4 8 8 O 1.21695 * 119.99838 * 180.02562 * 7 6 5 9 9 N 1.34767 * 120.00353 * 0.03018 * 7 6 5 10 10 C 1.46498 * 120.00366 * 179.97438 * 9 7 6 11 11 H 1.09004 * 112.85034 * 336.19184 * 10 9 7 12 12 C 1.53780 * 113.69526 * 107.46115 * 10 9 7 13 13 C 1.53783 * 87.08087 * 139.99282 * 12 10 9 14 14 H 1.09002 * 113.69083 * 220.00698 * 13 12 10 15 15 N 1.46496 * 113.61176 * 89.12298 * 13 12 10 16 16 C 1.34777 * 120.00258 * 107.50310 * 15 13 12 17 17 O 1.21279 * 120.00166 * 359.97438 * 16 15 13 18 18 C 1.50706 * 119.99762 * 179.97438 * 16 15 13 19 19 S 1.81003 * 109.46853 * 179.97438 * 18 16 15 20 20 C 1.76196 * 99.99846 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00030 * 359.97438 * 20 19 18 22 22 C 1.38802 * 119.99637 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00513 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99570 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47083 * 60.00261 * 24 22 20 26 26 H 1.48506 * 109.46585 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47209 * 299.99712 * 24 22 20 28 28 C 1.53772 * 87.08312 * 334.57032 * 13 12 10 29 29 H 1.09004 * 109.46629 * 270.12973 * 1 2 3 30 30 H 1.08996 * 109.47455 * 30.13522 * 1 2 3 31 31 H 1.09003 * 109.46833 * 150.13958 * 1 2 3 32 32 H 1.07997 * 125.42705 * 179.74807 * 4 3 2 33 33 H 0.97008 * 120.00094 * 359.97438 * 9 7 6 34 34 H 1.09002 * 113.61314 * 25.44925 * 12 10 9 35 35 H 1.08998 * 113.61832 * 254.54228 * 12 10 9 36 36 H 0.96999 * 119.99694 * 287.49700 * 15 13 12 37 37 H 1.09000 * 109.47318 * 299.99141 * 18 16 15 38 38 H 1.09000 * 109.47161 * 59.99772 * 18 16 15 39 39 H 0.96995 * 120.00407 * 180.02562 * 23 22 20 40 40 H 1.09006 * 113.61862 * 139.98104 * 28 13 12 41 41 H 1.09007 * 113.61676 * 270.88485 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2979 1.0779 0.0000 4 6 3.5452 0.6901 -0.0056 5 8 3.5890 -0.6459 -0.0042 6 6 2.3137 -1.0991 0.0031 7 6 1.8829 -2.5016 0.0065 8 8 0.6968 -2.7737 0.0128 9 7 2.8006 -3.4885 0.0029 10 6 2.3704 -4.8889 0.0069 11 1 1.3697 -5.0231 0.4179 12 6 2.5857 -5.6054 -1.3366 13 6 3.0271 -6.8326 -0.5217 14 1 3.8778 -7.3612 -0.9520 15 7 1.9235 -7.7272 -0.1639 16 6 1.7976 -8.9208 -0.7769 17 8 2.5977 -9.2542 -1.6252 18 6 0.6627 -9.8412 -0.4083 19 16 0.7658 -11.3528 -1.3985 20 6 -0.6373 -12.2204 -0.7796 21 1 -1.2525 -11.7745 -0.0120 22 6 -0.9513 -13.4773 -1.2777 23 7 -0.2007 -14.0214 -2.2121 24 14 -2.4385 -14.3974 -0.6209 25 1 -3.6646 -13.5969 -0.8681 26 1 -2.5544 -15.7073 -1.3108 27 1 -2.2782 -14.6196 0.8386 28 6 3.4133 -5.8521 0.5981 29 1 -0.3633 0.0023 1.0277 30 1 -0.3634 0.8887 -0.5159 31 1 -0.3633 -0.8913 -0.5117 32 1 4.4042 1.3446 -0.0109 33 1 3.7461 -3.2716 -0.0023 34 1 3.3835 -5.1719 -1.9397 35 1 1.6659 -5.7630 -1.8998 36 1 1.2835 -7.4604 0.5144 37 1 0.7292 -10.0945 0.6498 38 1 -0.2871 -9.3433 -0.6037 39 1 -0.4203 -14.8996 -2.5604 40 1 3.1615 -6.2088 1.5969 41 1 4.4373 -5.4859 0.5240 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001758665774.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:41 Heat of formation + Delta-G solvation = -27.958857 kcal Electronic energy + Delta-G solvation = -25388.862069 eV Core-core repulsion = 21397.659673 eV Total energy + Delta-G solvation = -3991.202396 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.96454 -40.70989 -39.43632 -37.98166 -35.92241 -34.36450 -32.64945 -32.42836 -31.99047 -29.17856 -28.34615 -26.08961 -25.55564 -25.21306 -23.76575 -22.17466 -21.25500 -20.87424 -19.83887 -18.62549 -17.87482 -17.42455 -17.10116 -16.99526 -16.17519 -16.05947 -15.22505 -15.17343 -15.02408 -14.80545 -14.75867 -14.34364 -13.78080 -13.70585 -13.49665 -13.20550 -13.02064 -12.88904 -12.74887 -12.62882 -12.29303 -11.94584 -11.62302 -11.40828 -11.16560 -11.05052 -11.03655 -10.89111 -10.77309 -10.54621 -9.83036 -9.67687 -9.46665 -9.35287 -9.06722 -8.95065 -8.25366 -6.50801 -6.21793 -3.92641 0.29425 1.90008 1.91769 2.58233 2.68766 2.96466 3.01047 3.23845 3.27258 3.30239 3.51375 3.65007 4.04339 4.20212 4.20961 4.23013 4.27334 4.61412 4.67524 4.90366 4.95849 5.08847 5.13384 5.23947 5.25904 5.29056 5.39299 5.45000 5.48542 5.53821 5.57410 5.76574 5.82567 5.86913 5.88314 6.01706 6.12941 6.59933 6.81742 7.07172 7.55409 7.59118 7.63582 8.34869 8.55305 9.23477 10.85551 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.026052 B = 0.001734 C = 0.001656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.523961 B =16139.869402 C =16906.203846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.083 3.917 3 N -0.494 5.494 4 C 0.205 3.795 5 O -0.193 6.193 6 C -0.120 4.120 7 C 0.610 3.390 8 O -0.509 6.509 9 N -0.706 5.706 10 C 0.120 3.880 11 H 0.120 0.880 12 C -0.164 4.164 13 C 0.130 3.870 14 H 0.111 0.889 15 N -0.723 5.723 16 C 0.536 3.464 17 O -0.515 6.515 18 C -0.154 4.154 19 S -0.059 6.059 20 C -0.537 4.537 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 C -0.152 4.152 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.258 0.742 33 H 0.406 0.594 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.399 0.601 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.269 0.731 40 H 0.084 0.916 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.064 29.775 7.529 32.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.040 4.040 3 N -0.223 5.223 4 C -0.020 4.020 5 O -0.079 6.079 6 C -0.175 4.175 7 C 0.395 3.605 8 O -0.386 6.386 9 N -0.356 5.356 10 C 0.016 3.984 11 H 0.138 0.862 12 C -0.204 4.204 13 C 0.022 3.978 14 H 0.129 0.871 15 N -0.377 5.377 16 C 0.322 3.678 17 O -0.388 6.388 18 C -0.305 4.305 19 S 0.167 5.833 20 C -0.685 4.685 21 H 0.091 0.909 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 C -0.191 4.191 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.115 0.885 32 H 0.273 0.727 33 H 0.241 0.759 34 H 0.112 0.888 35 H 0.100 0.900 36 H 0.234 0.766 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.079 0.921 40 H 0.103 0.897 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.444 29.403 5.993 31.458 hybrid contribution -1.229 -0.341 1.721 2.142 sum 8.216 29.061 7.714 31.170 Atomic orbital electron populations 1.20437 0.85137 1.04624 1.03913 1.22134 0.98531 0.86305 0.97055 1.70384 1.01375 1.31456 1.19117 1.28388 0.97685 0.79337 0.96613 1.84483 1.29594 1.24546 1.69249 1.22922 0.81488 0.96307 1.16765 1.16342 0.85919 0.81376 0.76841 1.90897 1.15685 1.81802 1.50211 1.45889 1.09652 1.06005 1.74082 1.22819 1.00003 0.77745 0.97867 0.86200 1.23973 1.03348 0.96163 0.96953 1.21515 0.91379 0.89499 0.95368 0.87119 1.45732 1.30274 1.18177 1.43477 1.20346 0.86023 0.80743 0.80644 1.90702 1.42988 1.73991 1.31138 1.23544 0.98726 1.02342 1.05885 1.85387 1.38670 1.08873 1.50346 1.22829 1.13753 1.05200 1.26697 0.90938 1.24989 0.97366 0.96421 0.94764 1.70002 1.37599 1.16594 1.26098 0.86225 0.81660 0.78624 0.78996 1.19917 1.20810 1.19946 1.23757 0.99801 0.95721 0.99833 0.89803 0.90297 0.88485 0.72671 0.75917 0.88843 0.90025 0.76627 0.89104 0.89077 0.92119 0.89740 0.88250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 9.87 36.01 0.36 -0.32 16 2 C 0.08 0.77 7.16 -82.47 -0.59 0.18 16 3 N -0.49 -4.19 11.26 -10.88 -0.12 -4.31 16 4 C 0.21 1.05 13.21 52.25 0.69 1.74 16 5 O -0.19 -1.28 10.57 4.41 0.05 -1.23 16 6 C -0.12 -1.06 7.18 -36.84 -0.26 -1.32 16 7 C 0.61 5.89 7.79 -12.84 -0.10 5.79 16 8 O -0.51 -6.28 14.40 5.19 0.07 -6.21 16 9 N -0.71 -5.15 5.35 -54.31 -0.29 -5.44 16 10 C 0.12 0.95 4.11 -67.12 -0.28 0.67 16 11 H 0.12 1.09 7.46 -51.93 -0.39 0.70 16 12 C -0.16 -1.53 7.68 -25.92 -0.20 -1.73 16 13 C 0.13 1.33 4.32 -67.12 -0.29 1.04 16 14 H 0.11 1.32 7.46 -51.93 -0.39 0.94 16 15 N -0.72 -8.95 5.26 -53.02 -0.28 -9.23 16 16 C 0.54 9.61 7.85 -10.98 -0.09 9.52 16 17 O -0.51 -11.30 15.46 5.56 0.09 -11.21 16 18 C -0.15 -3.04 6.16 36.01 0.22 -2.82 16 19 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 20 C -0.54 -15.22 9.50 30.94 0.29 -14.93 16 21 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.09 13.22 55.49 0.73 -25.35 16 24 Si 0.92 21.37 29.55 -169.99 -5.02 16.34 16 25 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 28 C -0.15 -1.02 7.58 -25.92 -0.20 -1.22 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.10 0.87 6.47 -51.93 -0.34 0.53 16 32 H 0.26 -0.11 8.06 -52.49 -0.42 -0.53 16 33 H 0.41 2.06 8.52 -40.82 -0.35 1.71 16 34 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.40 3.88 8.70 -40.82 -0.36 3.53 16 37 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 38 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 39 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.10 0.49 8.12 -51.93 -0.42 0.07 16 LS Contribution 372.78 15.07 5.62 5.62 Total: -1.00 -37.46 372.78 -7.07 -44.53 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -5.16 Total: 1.69 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -0.54 Total: -1.40 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: 0.04 Total: -44.33 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: 0.21 Total: -18.65 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -37.46 -7.07 -44.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758665774.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.568 kcal (2) G-P(sol) polarization free energy of solvation -37.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds