Wall clock time and date at job start Tue Mar 31 2020 22:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35311 * 128.04206 * 2 1 4 4 O 1.34018 * 106.66704 * 180.24008 * 3 2 1 5 5 N 1.20904 * 111.84381 * 359.74365 * 4 3 2 6 6 C 1.30975 * 111.44229 * 0.02562 * 5 4 3 7 7 C 1.48337 * 126.93825 * 179.97438 * 6 5 4 8 8 O 1.21492 * 119.99794 * 180.02562 * 7 6 5 9 9 N 1.34772 * 119.99814 * 0.03116 * 7 6 5 10 10 C 1.46503 * 119.99877 * 180.02562 * 9 7 6 11 11 C 1.50707 * 109.47017 * 179.97438 * 10 9 7 12 12 C 1.30999 * 119.99403 * 127.00263 * 11 10 9 13 13 C 1.50693 * 120.00654 * 7.56227 * 12 11 10 14 14 N 1.46498 * 109.47618 * 127.15614 * 13 12 11 15 15 C 1.34771 * 120.00429 * 179.97438 * 14 13 12 16 16 O 1.21286 * 120.00016 * 359.72470 * 15 14 13 17 17 C 1.50698 * 120.00474 * 179.97438 * 15 14 13 18 18 S 1.80993 * 109.47300 * 180.02562 * 17 15 14 19 19 C 1.76209 * 99.99979 * 180.02562 * 18 17 15 20 20 H 1.08000 * 119.99615 * 359.97438 * 19 18 17 21 21 C 1.38793 * 120.00170 * 180.02562 * 19 18 17 22 22 N 1.31631 * 120.00047 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00227 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.46730 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47051 * 120.00045 * 23 21 19 26 26 H 1.48498 * 109.46929 * 240.00131 * 23 21 19 27 27 H 1.09006 * 109.47118 * 270.16770 * 1 2 3 28 28 H 1.09005 * 109.47181 * 30.16528 * 1 2 3 29 29 H 1.08998 * 109.47719 * 150.16273 * 1 2 3 30 30 H 1.08006 * 126.66526 * 359.94461 * 3 2 1 31 31 H 0.96998 * 120.00329 * 359.97438 * 9 7 6 32 32 H 1.08998 * 109.47415 * 59.99549 * 10 9 7 33 33 H 1.08996 * 109.46892 * 299.99217 * 10 9 7 34 34 H 1.07991 * 120.00090 * 307.00306 * 11 10 9 35 35 H 1.08005 * 119.99209 * 187.55778 * 12 11 10 36 36 H 1.09003 * 109.47209 * 7.15149 * 13 12 11 37 37 H 1.09003 * 109.46934 * 247.15273 * 13 12 11 38 38 H 0.97003 * 119.99666 * 359.97438 * 14 13 12 39 39 H 1.08996 * 109.47398 * 300.00588 * 17 15 14 40 40 H 1.09003 * 109.46684 * 59.99985 * 17 15 14 41 41 H 0.97006 * 120.00102 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3409 1.0657 0.0000 4 8 3.5889 0.5772 -0.0054 5 7 3.5988 -0.6318 -0.0035 6 6 2.3836 -1.1206 0.0027 7 6 1.9991 -2.5532 0.0062 8 8 0.8254 -2.8670 0.0115 9 7 2.9516 -3.5066 0.0035 10 6 2.5718 -4.9215 0.0063 11 6 3.8139 -5.7751 0.0018 12 6 3.9707 -6.7079 0.9080 13 6 2.8412 -7.0435 1.8474 14 7 2.5831 -8.4850 1.8057 15 6 1.6095 -9.0177 2.5703 16 8 0.9504 -8.3045 3.2969 17 6 1.3436 -10.5004 2.5269 18 16 -0.0129 -10.9034 3.6554 19 6 -0.1067 -12.6459 3.4111 20 1 0.5674 -13.1315 2.7210 21 6 -1.0474 -13.3943 4.1049 22 7 -1.8692 -12.8024 4.9457 23 14 -1.1473 -15.2415 3.8454 24 1 -0.1208 -15.6587 2.8568 25 1 -0.9032 -15.9364 5.1349 26 1 -2.4969 -15.5979 3.3388 27 1 -0.3634 0.0030 1.0277 28 1 -0.3634 0.8885 -0.5164 29 1 -0.3634 -0.8914 -0.5113 30 1 2.0560 2.1075 -0.0008 31 1 3.8887 -3.2560 -0.0011 32 1 1.9779 -5.1401 -0.8811 33 1 1.9849 -5.1383 0.8988 34 1 4.5745 -5.6176 -0.7484 35 1 4.9096 -7.2366 0.9818 36 1 1.9437 -6.5047 1.5437 37 1 3.1139 -6.7525 2.8619 38 1 3.1129 -9.0560 1.2276 39 1 1.0704 -10.7910 1.5126 40 1 2.2412 -11.0395 2.8300 41 1 -2.5270 -13.3255 5.4303 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001759642689.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:43 Heat of formation + Delta-G solvation = 10.762184 kcal Electronic energy + Delta-G solvation = -24728.824023 eV Core-core repulsion = 20739.300697 eV Total energy + Delta-G solvation = -3989.523326 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.58021 -40.08560 -39.22290 -36.99695 -35.16941 -34.83739 -33.24637 -32.46786 -32.41774 -29.62587 -28.69323 -27.43972 -25.70282 -25.26551 -24.29544 -22.15077 -21.11711 -20.45864 -19.73362 -18.54294 -18.26878 -17.72607 -17.08530 -16.93212 -16.30457 -15.89835 -15.58991 -15.27059 -14.91818 -14.80028 -14.63481 -14.09571 -13.89676 -13.82665 -13.70186 -13.62945 -13.20868 -13.07077 -12.83685 -12.67067 -12.50264 -11.86340 -11.83814 -11.25260 -11.06550 -11.01433 -10.79172 -10.75632 -10.71298 -9.98571 -9.93546 -9.80204 -9.52603 -9.34499 -9.07100 -8.82705 -8.22441 -6.49359 -6.21147 -3.91726 0.64096 1.18245 1.40873 2.52454 2.71672 2.72665 3.08217 3.09689 3.22098 3.29459 3.35131 3.47558 3.78599 4.08353 4.20715 4.25351 4.37461 4.51430 4.58799 4.82279 4.89348 5.12817 5.14098 5.15962 5.17305 5.23603 5.36949 5.39679 5.48759 5.52339 5.72941 5.80059 5.88289 5.89605 6.05681 6.13818 6.23583 6.57863 6.90727 7.47166 7.60375 7.66229 7.68206 8.35969 8.59371 9.24245 10.86332 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.024564 B = 0.001578 C = 0.001512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.596462 B =17743.649087 C =18516.594934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.149 4.149 3 C -0.066 4.066 4 O 0.124 5.876 5 N -0.332 5.332 6 C -0.028 4.028 7 C 0.597 3.403 8 O -0.512 6.512 9 N -0.710 5.710 10 C 0.133 3.867 11 C -0.166 4.166 12 C -0.138 4.138 13 C 0.133 3.867 14 N -0.735 5.735 15 C 0.531 3.469 16 O -0.516 6.516 17 C -0.153 4.153 18 S -0.060 6.060 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.225 0.775 31 H 0.407 0.593 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.399 0.601 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.185 26.785 -14.100 33.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.154 4.154 3 C -0.146 4.146 4 O 0.048 5.952 5 N -0.033 5.033 6 C -0.187 4.187 7 C 0.381 3.619 8 O -0.385 6.385 9 N -0.363 5.363 10 C 0.011 3.989 11 C -0.185 4.185 12 C -0.157 4.157 13 C 0.010 3.990 14 N -0.390 5.390 15 C 0.317 3.683 16 O -0.390 6.390 17 C -0.303 4.303 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.746 3.254 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.107 0.893 30 H 0.241 0.759 31 H 0.242 0.758 32 H 0.101 0.899 33 H 0.109 0.891 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.233 0.767 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 13.242 27.080 -12.748 32.729 hybrid contribution 0.800 -1.920 -1.305 2.455 sum 14.043 25.160 -14.053 32.058 Atomic orbital electron populations 1.20262 0.86328 1.04042 1.03543 1.21418 0.99299 0.90001 1.04638 1.25825 0.82184 1.01427 1.05204 1.84768 1.29591 1.15108 1.65690 1.74146 1.21579 0.91823 1.15709 1.23439 0.89690 0.97030 1.08587 1.16847 0.85592 0.82340 0.77149 1.90837 1.17296 1.81513 1.48888 1.45779 1.09904 1.06004 1.74562 1.20677 0.95832 0.78142 1.04217 1.22819 0.98640 0.98337 0.98690 1.23049 0.98908 0.98751 0.94989 1.20497 0.96655 0.82566 0.99331 1.45934 1.38282 1.07828 1.46953 1.20348 0.78864 0.90153 0.78910 1.90716 1.47431 1.62195 1.38634 1.23526 1.06543 0.93670 1.06600 1.85427 1.37743 1.08044 1.52159 1.22912 1.22784 0.92407 1.30253 0.90856 1.24997 0.94654 0.99465 0.94496 1.70032 1.19003 1.36121 1.25105 0.86110 0.78127 0.83041 0.78171 1.19627 1.20573 1.20559 0.90252 0.90855 0.89338 0.75867 0.75779 0.89945 0.89103 0.85820 0.85652 0.90210 0.90562 0.76682 0.89154 0.89158 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.01 36.01 0.36 -0.19 16 2 C -0.15 -1.12 6.34 -104.12 -0.66 -1.78 16 3 C -0.07 -0.31 12.24 29.69 0.36 0.05 16 4 O 0.12 0.85 11.18 17.24 0.19 1.05 16 5 N -0.33 -2.94 11.84 33.29 0.39 -2.55 16 6 C -0.03 -0.27 7.19 -82.53 -0.59 -0.87 16 7 C 0.60 6.68 7.85 -12.11 -0.10 6.58 16 8 O -0.51 -7.21 15.34 5.37 0.08 -7.12 16 9 N -0.71 -6.35 5.55 -62.27 -0.35 -6.69 16 10 C 0.13 1.20 5.76 -5.19 -0.03 1.17 16 11 C -0.17 -1.14 9.63 -36.02 -0.35 -1.49 16 12 C -0.14 -1.05 9.63 -36.03 -0.35 -1.39 16 13 C 0.13 1.52 5.76 -5.20 -0.03 1.49 16 14 N -0.73 -9.65 5.55 -61.48 -0.34 -9.99 16 15 C 0.53 9.97 7.85 -10.99 -0.09 9.88 16 16 O -0.52 -11.90 15.86 5.55 0.09 -11.81 16 17 C -0.15 -3.09 6.16 36.00 0.22 -2.86 16 18 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 19 C -0.54 -15.33 9.50 30.94 0.29 -15.04 16 20 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.32 13.22 55.49 0.73 -25.59 16 23 Si 0.92 21.50 29.55 -169.99 -5.02 16.47 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.09 0.76 6.89 -51.93 -0.36 0.41 16 30 H 0.22 0.00 8.06 -52.48 -0.42 -0.42 16 31 H 0.41 2.90 8.22 -40.82 -0.34 2.57 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.09 0.98 5.30 -51.93 -0.28 0.71 16 34 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 35 H 0.13 0.74 8.06 -52.48 -0.42 0.31 16 36 H 0.08 1.01 5.30 -51.93 -0.28 0.74 16 37 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.40 3.98 8.46 -40.82 -0.35 3.63 16 39 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 40 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 41 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 376.69 15.07 5.68 5.68 Total: -1.00 -37.74 376.69 -6.74 -44.48 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -4.94 Total: 2.39 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -1.05 Total: -2.44 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: 0.44 Total: -44.82 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: 0.36 Total: -17.89 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.74 -6.74 -44.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759642689.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.240 kcal (2) G-P(sol) polarization free energy of solvation -37.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds