Wall clock time and date at job start Tue Mar 31 2020 22:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35311 * 128.04206 * 2 1 4 4 O 1.34018 * 106.66704 * 180.24008 * 3 2 1 5 5 N 1.20904 * 111.84381 * 359.74365 * 4 3 2 6 6 C 1.30975 * 111.44229 * 0.02562 * 5 4 3 7 7 C 1.48337 * 126.93825 * 179.97438 * 6 5 4 8 8 O 1.21492 * 119.99794 * 180.02562 * 7 6 5 9 9 N 1.34772 * 119.99814 * 0.03116 * 7 6 5 10 10 C 1.46503 * 119.99877 * 180.02562 * 9 7 6 11 11 C 1.50707 * 109.47017 * 179.97438 * 10 9 7 12 12 C 1.30999 * 119.99403 * 127.00263 * 11 10 9 13 13 C 1.50693 * 120.00654 * 7.56227 * 12 11 10 14 14 N 1.46498 * 109.47618 * 127.15614 * 13 12 11 15 15 C 1.34771 * 120.00429 * 179.97438 * 14 13 12 16 16 O 1.21286 * 120.00016 * 359.72470 * 15 14 13 17 17 C 1.50698 * 120.00474 * 179.97438 * 15 14 13 18 18 S 1.80993 * 109.47300 * 180.02562 * 17 15 14 19 19 C 1.76209 * 99.99979 * 180.02562 * 18 17 15 20 20 H 1.08000 * 119.99615 * 359.97438 * 19 18 17 21 21 C 1.38793 * 120.00170 * 180.02562 * 19 18 17 22 22 N 1.31631 * 120.00047 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00227 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.46730 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47051 * 120.00045 * 23 21 19 26 26 H 1.48498 * 109.46929 * 240.00131 * 23 21 19 27 27 H 1.09006 * 109.47118 * 270.16770 * 1 2 3 28 28 H 1.09005 * 109.47181 * 30.16528 * 1 2 3 29 29 H 1.08998 * 109.47719 * 150.16273 * 1 2 3 30 30 H 1.08006 * 126.66526 * 359.94461 * 3 2 1 31 31 H 0.96998 * 120.00329 * 359.97438 * 9 7 6 32 32 H 1.08998 * 109.47415 * 59.99549 * 10 9 7 33 33 H 1.08996 * 109.46892 * 299.99217 * 10 9 7 34 34 H 1.07991 * 120.00090 * 307.00306 * 11 10 9 35 35 H 1.08005 * 119.99209 * 187.55778 * 12 11 10 36 36 H 1.09003 * 109.47209 * 7.15149 * 13 12 11 37 37 H 1.09003 * 109.46934 * 247.15273 * 13 12 11 38 38 H 0.97003 * 119.99666 * 359.97438 * 14 13 12 39 39 H 1.08996 * 109.47398 * 300.00588 * 17 15 14 40 40 H 1.09003 * 109.46684 * 59.99985 * 17 15 14 41 41 H 0.97006 * 120.00102 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3409 1.0657 0.0000 4 8 3.5889 0.5772 -0.0054 5 7 3.5988 -0.6318 -0.0035 6 6 2.3836 -1.1206 0.0027 7 6 1.9991 -2.5532 0.0062 8 8 0.8254 -2.8670 0.0115 9 7 2.9516 -3.5066 0.0035 10 6 2.5718 -4.9215 0.0063 11 6 3.8139 -5.7751 0.0018 12 6 3.9707 -6.7079 0.9080 13 6 2.8412 -7.0435 1.8474 14 7 2.5831 -8.4850 1.8057 15 6 1.6095 -9.0177 2.5703 16 8 0.9504 -8.3045 3.2969 17 6 1.3436 -10.5004 2.5269 18 16 -0.0129 -10.9034 3.6554 19 6 -0.1067 -12.6459 3.4111 20 1 0.5674 -13.1315 2.7210 21 6 -1.0474 -13.3943 4.1049 22 7 -1.8692 -12.8024 4.9457 23 14 -1.1473 -15.2415 3.8454 24 1 -0.1208 -15.6587 2.8568 25 1 -0.9032 -15.9364 5.1349 26 1 -2.4969 -15.5979 3.3388 27 1 -0.3634 0.0030 1.0277 28 1 -0.3634 0.8885 -0.5164 29 1 -0.3634 -0.8914 -0.5113 30 1 2.0560 2.1075 -0.0008 31 1 3.8887 -3.2560 -0.0011 32 1 1.9779 -5.1401 -0.8811 33 1 1.9849 -5.1383 0.8988 34 1 4.5745 -5.6176 -0.7484 35 1 4.9096 -7.2366 0.9818 36 1 1.9437 -6.5047 1.5437 37 1 3.1139 -6.7525 2.8619 38 1 3.1129 -9.0560 1.2276 39 1 1.0704 -10.7910 1.5126 40 1 2.2412 -11.0395 2.8300 41 1 -2.5270 -13.3255 5.4303 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001759642689.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:43 Heat of formation + Delta-G solvation = -18.760372 kcal Electronic energy + Delta-G solvation = -24730.104217 eV Core-core repulsion = 20739.300697 eV Total energy + Delta-G solvation = -3990.803520 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -46.17062 -40.96306 -40.61671 -37.89431 -35.92532 -35.71990 -34.59345 -34.16102 -33.18050 -31.08985 -29.25804 -28.31515 -27.67886 -26.40308 -25.00016 -22.71012 -21.95752 -21.76137 -20.52753 -19.82926 -19.05132 -18.87036 -17.99384 -17.78714 -17.61592 -16.89715 -16.82208 -16.75933 -16.46558 -15.91333 -15.61586 -15.42666 -14.85076 -14.72779 -14.53992 -14.43345 -14.26393 -14.19248 -14.07801 -13.57264 -13.37598 -13.22059 -13.16649 -12.91500 -12.60045 -12.43752 -12.02671 -11.71450 -11.57229 -11.43361 -11.16547 -11.11377 -10.58816 -10.43094 -10.39212 -10.27895 -9.90938 -8.68085 -8.35374 -6.13923 -0.00106 0.67892 0.72888 1.28287 1.41373 1.47953 1.57625 1.58909 1.87827 1.93006 2.24229 2.26484 2.41307 2.83159 2.98942 3.32036 3.50703 3.57906 3.84049 3.88980 3.99883 4.02997 4.05604 4.27334 4.33908 4.40320 4.49884 4.57784 4.63909 4.74536 4.78962 4.85695 4.91979 5.06636 5.30520 5.32168 5.40857 5.41585 5.63609 6.16290 6.19494 6.48338 6.81814 6.99196 7.05925 7.21507 8.74206 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.024564 B = 0.001578 C = 0.001512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.596462 B =17743.649087 C =18516.594934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.177 4.177 3 C -0.031 4.031 4 O 0.131 5.869 5 N -0.344 5.344 6 C -0.056 4.056 7 C 0.590 3.410 8 O -0.553 6.553 9 N -0.699 5.699 10 C 0.129 3.871 11 C -0.146 4.146 12 C -0.135 4.135 13 C 0.129 3.871 14 N -0.706 5.706 15 C 0.531 3.469 16 O -0.568 6.568 17 C -0.128 4.128 18 S -0.156 6.156 19 C -0.545 4.545 20 H 0.084 0.916 21 C 0.012 3.988 22 N -0.912 5.912 23 Si 1.001 2.999 24 H -0.256 1.256 25 H -0.274 1.274 26 H -0.274 1.274 27 H 0.075 0.925 28 H 0.104 0.896 29 H 0.059 0.941 30 H 0.276 0.724 31 H 0.417 0.583 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.157 0.843 35 H 0.157 0.843 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.419 0.581 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.870 27.274 -16.089 35.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.183 4.183 3 C -0.111 4.111 4 O 0.054 5.946 5 N -0.044 5.044 6 C -0.214 4.214 7 C 0.375 3.625 8 O -0.430 6.430 9 N -0.351 5.351 10 C 0.007 3.993 11 C -0.165 4.165 12 C -0.154 4.154 13 C 0.006 3.994 14 N -0.361 5.361 15 C 0.317 3.683 16 O -0.447 6.447 17 C -0.279 4.279 18 S 0.071 5.929 19 C -0.693 4.693 20 H 0.103 0.897 21 C -0.193 4.193 22 N -0.549 5.549 23 Si 0.822 3.178 24 H -0.179 1.179 25 H -0.199 1.199 26 H -0.200 1.200 27 H 0.094 0.906 28 H 0.122 0.878 29 H 0.078 0.922 30 H 0.292 0.708 31 H 0.254 0.746 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.175 0.825 35 H 0.174 0.826 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.257 0.743 39 H 0.129 0.871 40 H 0.132 0.868 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 16.020 27.555 -14.785 35.136 hybrid contribution 0.043 -1.871 -0.750 2.016 sum 16.063 25.684 -15.535 34.045 Atomic orbital electron populations 1.20220 0.86087 1.04099 1.03355 1.21687 0.99877 0.90312 1.06409 1.26664 0.80327 1.02665 1.01459 1.84740 1.30716 1.14358 1.64784 1.74139 1.21210 0.92718 1.16299 1.23424 0.90840 0.96666 1.10451 1.17205 0.85329 0.83464 0.76496 1.90808 1.18877 1.82331 1.50938 1.45723 1.10151 1.05720 1.73490 1.20657 0.97055 0.78728 1.02870 1.22918 0.97805 0.96982 0.98780 1.22958 0.98501 0.99799 0.94133 1.20583 0.97861 0.80893 1.00056 1.45646 1.36270 1.09000 1.45165 1.20149 0.79588 0.89368 0.79180 1.90705 1.49755 1.62990 1.41226 1.23363 1.04085 0.95131 1.05342 1.85638 1.42348 1.09236 1.55663 1.23247 1.23191 0.92360 1.30514 0.89748 1.26157 0.93977 1.05246 0.93879 1.70200 1.19924 1.38417 1.26336 0.84876 0.78575 0.75763 0.78540 1.17909 1.19915 1.19982 0.90626 0.87751 0.92248 0.70823 0.74559 0.90506 0.91453 0.82545 0.82578 0.91813 0.91672 0.74291 0.87068 0.86845 0.92001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.05 10.01 71.24 0.71 -0.34 16 2 C -0.18 -2.54 6.34 -19.54 -0.12 -2.67 16 3 C -0.03 -0.20 12.24 67.14 0.82 0.62 16 4 O 0.13 1.53 11.18 71.86 0.80 2.33 16 5 N -0.34 -5.80 11.84 -49.53 -0.59 -6.39 16 6 C -0.06 -1.10 7.19 42.96 0.31 -0.79 16 7 C 0.59 13.98 7.85 86.93 0.68 14.66 16 8 O -0.55 -16.94 15.34 -3.69 -0.06 -16.99 16 9 N -0.70 -12.67 5.55 -469.23 -2.60 -15.27 16 10 C 0.13 2.35 5.76 85.63 0.49 2.84 16 11 C -0.15 -1.66 9.63 25.65 0.25 -1.42 16 12 C -0.13 -1.70 9.63 25.65 0.25 -1.46 16 13 C 0.13 2.89 5.76 85.63 0.49 3.39 16 14 N -0.71 -17.62 5.55 -466.80 -2.59 -20.21 16 15 C 0.53 19.97 7.85 87.66 0.69 20.66 16 16 O -0.57 -27.31 15.86 -3.05 -0.05 -27.36 16 17 C -0.13 -5.10 6.16 71.24 0.44 -4.66 16 18 S -0.16 -8.81 20.57 -56.49 -1.16 -9.97 16 19 C -0.55 -31.41 9.50 67.95 0.65 -30.76 16 20 H 0.08 4.49 7.80 -2.91 -0.02 4.47 16 21 C 0.01 0.69 5.49 84.86 0.47 1.16 16 22 N -0.91 -56.72 13.22 21.65 0.29 -56.43 16 23 Si 1.00 43.91 29.55 68.60 2.03 45.94 16 24 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 25 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 26 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 27 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 28 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16 29 H 0.06 1.13 6.89 -2.39 -0.02 1.11 16 30 H 0.28 -1.39 8.06 -2.91 -0.02 -1.41 16 31 H 0.42 5.67 8.22 -92.71 -0.76 4.91 16 32 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.07 1.57 5.30 -2.39 -0.01 1.56 16 34 H 0.16 0.90 8.06 -2.92 -0.02 0.88 16 35 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 36 H 0.06 1.69 5.30 -2.39 -0.01 1.68 16 37 H 0.07 1.63 8.14 -2.39 -0.02 1.62 16 38 H 0.42 7.13 8.46 -92.71 -0.78 6.35 16 39 H 0.11 3.96 8.14 -2.40 -0.02 3.94 16 40 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 41 H 0.27 15.58 8.31 -92.70 -0.77 14.81 16 Total: -1.00 -88.46 376.69 1.74 -86.71 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -0.45 Total: 16.42 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: 6.12 Total: 1.23 kcal Atomic # 7 Polarization: -92.81 SS G_CDS: -5.49 Total: -98.31 kcal Atomic # 8 Polarization: -42.72 SS G_CDS: 0.70 Total: -42.02 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: -8.81 SS G_CDS: -1.16 Total: -9.97 kcal Total: -88.46 1.74 -86.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759642689.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.954 kcal (2) G-P(sol) polarization free energy of solvation -88.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds