Wall clock time and date at job start Tue Mar 31 2020 22:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41258 * 128.07793 * 2 1 4 4 N 1.30127 * 106.59210 * 179.97438 * 3 2 1 5 5 O 1.20884 * 111.98046 * 0.02562 * 4 3 2 6 6 C 1.34638 * 111.47082 * 359.97438 * 5 4 3 7 7 C 1.47508 * 126.94573 * 179.97438 * 6 5 4 8 8 O 1.21588 * 119.99898 * 180.02562 * 7 6 5 9 9 N 1.34776 * 120.00251 * 0.03055 * 7 6 5 10 10 C 1.46502 * 120.00383 * 180.02562 * 9 7 6 11 11 C 1.50695 * 109.47184 * 179.97438 * 10 9 7 12 12 C 1.31007 * 120.00275 * 127.15444 * 11 10 9 13 13 C 1.50700 * 119.99432 * 7.55558 * 12 11 10 14 14 N 1.46501 * 109.46880 * 127.00953 * 13 12 11 15 15 C 1.34778 * 120.00348 * 179.97438 * 14 13 12 16 16 O 1.21285 * 119.99827 * 0.02562 * 15 14 13 17 17 C 1.50694 * 120.00066 * 179.97438 * 15 14 13 18 18 S 1.81007 * 109.46991 * 179.97438 * 17 15 14 19 19 C 1.76203 * 100.00194 * 180.02562 * 18 17 15 20 20 H 1.08008 * 119.99584 * 0.02562 * 19 18 17 21 21 C 1.38790 * 120.00336 * 179.97438 * 19 18 17 22 22 N 1.31629 * 120.00367 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99879 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47127 * 89.99847 * 23 21 19 25 25 H 1.48503 * 109.47244 * 209.99889 * 23 21 19 26 26 H 1.48506 * 109.47314 * 329.99925 * 23 21 19 27 27 H 1.08999 * 109.47512 * 89.97240 * 1 2 3 28 28 H 1.09003 * 109.47225 * 209.97582 * 1 2 3 29 29 H 1.09004 * 109.47022 * 329.97152 * 1 2 3 30 30 H 1.07999 * 126.70645 * 359.94925 * 3 2 1 31 31 H 0.96997 * 119.99944 * 359.97438 * 9 7 6 32 32 H 1.09000 * 109.46931 * 299.99936 * 10 9 7 33 33 H 1.08995 * 109.47097 * 59.99313 * 10 9 7 34 34 H 1.08000 * 120.00411 * 307.15277 * 11 10 9 35 35 H 1.07994 * 119.99985 * 187.56039 * 12 11 10 36 36 H 1.08994 * 109.47431 * 247.00710 * 13 12 11 37 37 H 1.09002 * 109.47546 * 7.01432 * 13 12 11 38 38 H 0.97003 * 119.99772 * 359.97438 * 14 13 12 39 39 H 1.08997 * 109.47388 * 299.99808 * 17 15 14 40 40 H 1.08998 * 109.47170 * 60.00382 * 17 15 14 41 41 H 0.96996 * 120.00121 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3782 1.1119 0.0000 4 7 3.5890 0.6353 0.0006 5 8 3.5994 -0.5735 0.0004 6 6 2.3508 -1.0771 0.0002 7 6 1.9695 -2.5020 -0.0005 8 8 0.7952 -2.8171 -0.0010 9 7 2.9228 -3.4548 -0.0005 10 6 2.5442 -4.8700 -0.0018 11 6 3.7868 -5.7225 -0.0022 12 6 3.9391 -6.6588 0.9013 13 6 2.8042 -6.9988 1.8327 14 7 2.5451 -8.4398 1.7810 15 6 1.5669 -8.9763 2.5372 16 8 0.9008 -8.2659 3.2602 17 6 1.3000 -10.4584 2.4836 18 16 -0.0620 -10.8671 3.6034 19 6 -0.1561 -12.6080 3.3483 20 1 0.5213 -13.0901 2.6588 21 6 -1.0999 -13.3600 4.0340 22 7 -1.1705 -14.6604 3.8430 23 14 -2.2709 -12.5263 5.2269 24 1 -3.4970 -12.1040 4.5032 25 1 -2.6366 -13.4770 6.3075 26 1 -1.6101 -11.3350 5.8182 27 1 -0.3634 0.0005 -1.0276 28 1 -0.3634 -0.8902 0.5135 29 1 -0.3633 0.8898 0.5143 30 1 2.0947 2.1541 -0.0008 31 1 3.8597 -3.2034 -0.0004 32 1 1.9532 -5.0888 0.8876 33 1 1.9545 -5.0875 -0.8923 34 1 4.5519 -5.5616 -0.7472 35 1 4.8779 -7.1870 0.9787 36 1 3.0714 -6.7141 2.8502 37 1 1.9087 -6.4575 1.5271 38 1 3.0776 -9.0079 1.2024 39 1 1.0321 -10.7428 1.4660 40 1 2.1955 -11.0001 2.7884 41 1 -1.8298 -15.1860 4.3225 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001759645171.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:32 Heat of formation + Delta-G solvation = 11.762741 kcal Electronic energy + Delta-G solvation = -24833.400139 eV Core-core repulsion = 20843.920201 eV Total energy + Delta-G solvation = -3989.479938 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.53818 -40.20531 -39.35577 -37.11293 -35.42993 -34.77820 -33.26478 -32.60103 -32.43745 -29.81573 -29.00042 -27.24059 -25.71430 -25.33718 -24.17245 -22.70906 -21.17249 -20.58436 -19.92736 -18.72142 -18.30253 -17.75814 -17.21139 -16.47212 -16.31638 -16.06288 -15.67706 -15.40656 -15.05666 -14.93092 -14.66857 -14.14982 -13.91208 -13.83441 -13.74444 -13.70329 -13.31741 -13.14806 -13.13849 -12.80264 -12.68936 -11.98186 -11.79123 -11.34222 -11.26074 -11.00503 -10.91334 -10.84689 -10.61734 -10.11373 -9.99152 -9.84609 -9.61245 -9.46639 -9.01059 -8.92598 -8.50348 -6.92063 -6.28967 -4.00869 0.27560 1.32970 1.54597 2.14515 2.48390 2.75736 2.84592 2.94404 3.33011 3.38094 3.51080 3.63697 3.69510 4.05485 4.15164 4.25925 4.33382 4.45200 4.49226 4.73128 4.75570 4.79327 5.07885 5.10244 5.15984 5.19901 5.23735 5.29699 5.36593 5.41816 5.56182 5.68937 5.75447 5.78951 5.99260 6.00089 6.16126 6.47129 6.76844 7.42089 7.56026 7.56541 7.94015 8.41310 8.45127 9.17276 10.80206 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.021282 B = 0.001682 C = 0.001590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.375825 B =16643.672953 C =17606.641231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.115 4.115 3 C -0.014 4.014 4 N -0.341 5.341 5 O 0.116 5.884 6 C -0.096 4.096 7 C 0.606 3.394 8 O -0.503 6.503 9 N -0.711 5.711 10 C 0.133 3.867 11 C -0.165 4.165 12 C -0.138 4.138 13 C 0.133 3.867 14 N -0.733 5.733 15 C 0.530 3.470 16 O -0.518 6.518 17 C -0.124 4.124 18 S -0.141 6.141 19 C -0.522 4.522 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.200 0.800 31 H 0.408 0.592 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.401 0.599 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.658 28.796 -11.706 33.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.120 4.120 3 C -0.192 4.192 4 N -0.040 5.040 5 O 0.042 5.958 6 C -0.162 4.162 7 C 0.389 3.611 8 O -0.378 6.378 9 N -0.362 5.362 10 C 0.011 3.989 11 C -0.184 4.184 12 C -0.157 4.157 13 C 0.009 3.991 14 N -0.388 5.388 15 C 0.316 3.684 16 O -0.392 6.392 17 C -0.274 4.274 18 S 0.085 5.915 19 C -0.670 4.670 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.517 5.517 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 H 0.100 0.900 28 H 0.111 0.889 29 H 0.095 0.905 30 H 0.217 0.783 31 H 0.243 0.757 32 H 0.110 0.890 33 H 0.102 0.898 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.235 0.765 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.790 30.128 -10.439 33.996 hybrid contribution 0.353 -0.933 -0.706 1.222 sum 12.143 29.195 -11.145 33.527 Atomic orbital electron populations 1.20379 0.86112 1.04488 1.03645 1.21703 0.99199 0.90243 1.00816 1.25047 0.87644 1.02252 1.04268 1.73766 1.23132 0.91138 1.15983 1.84947 1.28115 1.15589 1.67162 1.23972 0.84781 0.96123 1.11322 1.16458 0.85689 0.81476 0.77487 1.90905 1.17082 1.80447 1.49373 1.45803 1.09859 1.06155 1.74403 1.20696 0.95915 0.77970 1.04326 1.22826 0.98633 0.98311 0.98660 1.23050 0.98902 0.98792 0.94986 1.20514 0.96676 0.82377 0.99489 1.45895 1.37776 1.08061 1.47061 1.20316 0.79050 0.90034 0.78981 1.90714 1.47374 1.62348 1.38773 1.23275 1.04785 0.93779 1.05599 1.84814 1.41518 1.10171 1.55018 1.22317 1.23630 0.89670 1.31334 0.89376 1.24708 0.96347 0.94281 0.95943 1.69936 1.35086 1.05118 1.41533 0.86738 0.82372 0.81145 0.81619 1.19179 1.19943 1.15917 0.89953 0.88941 0.90539 0.78344 0.75660 0.89048 0.89767 0.85655 0.85582 0.90503 0.90152 0.76493 0.88409 0.88397 0.91940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.55 9.96 36.00 0.36 -0.19 16 2 C -0.11 -0.86 6.37 -103.99 -0.66 -1.52 16 3 C -0.01 -0.10 12.14 -17.13 -0.21 -0.30 16 4 N -0.34 -2.90 12.04 30.45 0.37 -2.53 16 5 O 0.12 0.92 11.04 15.56 0.17 1.10 16 6 C -0.10 -0.79 7.29 -36.32 -0.26 -1.06 16 7 C 0.61 5.47 7.82 -12.48 -0.10 5.37 16 8 O -0.50 -6.09 15.11 5.29 0.08 -6.01 16 9 N -0.71 -4.68 5.55 -62.54 -0.35 -5.03 16 10 C 0.13 0.94 5.76 -5.20 -0.03 0.91 16 11 C -0.17 -0.86 9.63 -36.03 -0.35 -1.21 16 12 C -0.14 -0.85 9.63 -36.03 -0.35 -1.20 16 13 C 0.13 1.32 5.76 -5.19 -0.03 1.29 16 14 N -0.73 -8.62 5.55 -61.47 -0.34 -8.96 16 15 C 0.53 9.13 7.85 -10.99 -0.09 9.05 16 16 O -0.52 -11.03 15.86 5.55 0.09 -10.94 16 17 C -0.12 -2.34 6.16 36.00 0.22 -2.11 16 18 S -0.14 -3.57 18.55 -107.50 -1.99 -5.56 16 19 C -0.52 -14.97 10.04 30.94 0.31 -14.66 16 20 H 0.09 2.63 8.03 -52.48 -0.42 2.20 16 21 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 22 N -0.88 -26.48 13.97 55.49 0.78 -25.70 16 23 Si 0.86 21.77 27.74 -169.99 -4.71 17.06 16 24 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 26 H -0.24 -5.97 6.74 56.52 0.38 -5.59 16 27 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.09 0.74 6.73 -51.93 -0.35 0.39 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.20 0.63 8.06 -52.49 -0.42 0.21 16 31 H 0.41 1.72 8.29 -40.82 -0.34 1.39 16 32 H 0.09 0.81 5.30 -51.93 -0.28 0.54 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.13 0.42 8.06 -52.49 -0.42 -0.01 16 35 H 0.13 0.59 8.06 -52.49 -0.42 0.16 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.08 0.88 5.29 -51.93 -0.27 0.61 16 38 H 0.40 3.50 8.46 -40.82 -0.35 3.15 16 39 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 40 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 41 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 373.69 15.07 5.63 5.63 Total: -1.00 -36.58 373.69 -6.53 -43.11 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -4.97 Total: 0.77 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -1.28 Total: -2.93 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: 0.45 Total: -42.22 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: 0.34 Total: -15.85 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.71 Total: 17.06 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.58 -6.53 -43.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759645171.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.873 kcal (2) G-P(sol) polarization free energy of solvation -36.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds