Wall clock time and date at job start Tue Mar 31 2020 22:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41258 * 128.07793 * 2 1 4 4 N 1.30127 * 106.59210 * 179.97438 * 3 2 1 5 5 O 1.20884 * 111.98046 * 0.02562 * 4 3 2 6 6 C 1.34638 * 111.47082 * 359.97438 * 5 4 3 7 7 C 1.47508 * 126.94573 * 179.97438 * 6 5 4 8 8 O 1.21588 * 119.99898 * 180.02562 * 7 6 5 9 9 N 1.34776 * 120.00251 * 0.03055 * 7 6 5 10 10 C 1.46502 * 120.00383 * 180.02562 * 9 7 6 11 11 C 1.50695 * 109.47184 * 179.97438 * 10 9 7 12 12 C 1.31007 * 120.00275 * 127.15444 * 11 10 9 13 13 C 1.50700 * 119.99432 * 7.55558 * 12 11 10 14 14 N 1.46501 * 109.46880 * 127.00953 * 13 12 11 15 15 C 1.34778 * 120.00348 * 179.97438 * 14 13 12 16 16 O 1.21285 * 119.99827 * 0.02562 * 15 14 13 17 17 C 1.50694 * 120.00066 * 179.97438 * 15 14 13 18 18 S 1.81007 * 109.46991 * 179.97438 * 17 15 14 19 19 C 1.76203 * 100.00194 * 180.02562 * 18 17 15 20 20 H 1.08008 * 119.99584 * 0.02562 * 19 18 17 21 21 C 1.38790 * 120.00336 * 179.97438 * 19 18 17 22 22 N 1.31629 * 120.00367 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99879 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47127 * 89.99847 * 23 21 19 25 25 H 1.48503 * 109.47244 * 209.99889 * 23 21 19 26 26 H 1.48506 * 109.47314 * 329.99925 * 23 21 19 27 27 H 1.08999 * 109.47512 * 89.97240 * 1 2 3 28 28 H 1.09003 * 109.47225 * 209.97582 * 1 2 3 29 29 H 1.09004 * 109.47022 * 329.97152 * 1 2 3 30 30 H 1.07999 * 126.70645 * 359.94925 * 3 2 1 31 31 H 0.96997 * 119.99944 * 359.97438 * 9 7 6 32 32 H 1.09000 * 109.46931 * 299.99936 * 10 9 7 33 33 H 1.08995 * 109.47097 * 59.99313 * 10 9 7 34 34 H 1.08000 * 120.00411 * 307.15277 * 11 10 9 35 35 H 1.07994 * 119.99985 * 187.56039 * 12 11 10 36 36 H 1.08994 * 109.47431 * 247.00710 * 13 12 11 37 37 H 1.09002 * 109.47546 * 7.01432 * 13 12 11 38 38 H 0.97003 * 119.99772 * 359.97438 * 14 13 12 39 39 H 1.08997 * 109.47388 * 299.99808 * 17 15 14 40 40 H 1.08998 * 109.47170 * 60.00382 * 17 15 14 41 41 H 0.96996 * 120.00121 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3782 1.1119 0.0000 4 7 3.5890 0.6353 0.0006 5 8 3.5994 -0.5735 0.0004 6 6 2.3508 -1.0771 0.0002 7 6 1.9695 -2.5020 -0.0005 8 8 0.7952 -2.8171 -0.0010 9 7 2.9228 -3.4548 -0.0005 10 6 2.5442 -4.8700 -0.0018 11 6 3.7868 -5.7225 -0.0022 12 6 3.9391 -6.6588 0.9013 13 6 2.8042 -6.9988 1.8327 14 7 2.5451 -8.4398 1.7810 15 6 1.5669 -8.9763 2.5372 16 8 0.9008 -8.2659 3.2602 17 6 1.3000 -10.4584 2.4836 18 16 -0.0620 -10.8671 3.6034 19 6 -0.1561 -12.6080 3.3483 20 1 0.5213 -13.0901 2.6588 21 6 -1.0999 -13.3600 4.0340 22 7 -1.1705 -14.6604 3.8430 23 14 -2.2709 -12.5263 5.2269 24 1 -3.4970 -12.1040 4.5032 25 1 -2.6366 -13.4770 6.3075 26 1 -1.6101 -11.3350 5.8182 27 1 -0.3634 0.0005 -1.0276 28 1 -0.3634 -0.8902 0.5135 29 1 -0.3633 0.8898 0.5143 30 1 2.0947 2.1541 -0.0008 31 1 3.8597 -3.2034 -0.0004 32 1 1.9532 -5.0888 0.8876 33 1 1.9545 -5.0875 -0.8923 34 1 4.5519 -5.5616 -0.7472 35 1 4.8779 -7.1870 0.9787 36 1 3.0714 -6.7141 2.8502 37 1 1.9087 -6.4575 1.5271 38 1 3.0776 -9.0079 1.2024 39 1 1.0321 -10.7428 1.4660 40 1 2.1955 -11.0001 2.7884 41 1 -1.8298 -15.1860 4.3225 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001759645171.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:31 Heat of formation + Delta-G solvation = -16.182488 kcal Electronic energy + Delta-G solvation = -24834.611935 eV Core-core repulsion = 20843.920201 eV Total energy + Delta-G solvation = -3990.691734 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -46.10367 -40.94104 -40.61634 -37.86237 -36.11011 -35.56839 -34.66841 -34.09466 -33.25315 -31.14005 -29.59353 -28.05159 -27.77515 -26.22964 -24.76050 -23.28072 -21.91313 -21.75237 -20.60044 -19.93127 -19.13942 -18.89039 -17.99315 -17.78809 -17.15396 -17.01299 -16.80076 -16.67818 -16.41990 -15.87638 -15.61380 -15.35037 -14.94019 -14.78322 -14.71837 -14.39893 -14.28936 -14.23181 -14.08913 -13.66527 -13.53934 -13.34227 -13.18975 -13.00554 -12.64394 -12.34289 -11.96213 -11.85361 -11.57908 -11.45263 -11.16760 -11.12003 -10.70101 -10.52910 -10.47048 -10.31568 -9.84834 -8.99082 -8.51129 -6.21828 -0.34685 0.76187 1.01914 1.03571 1.31784 1.47408 1.52171 1.56318 1.60530 1.80676 2.20297 2.25269 2.41688 2.74785 2.87228 3.14553 3.54285 3.60465 3.70216 3.88962 3.93644 3.98014 4.10168 4.24944 4.28185 4.40749 4.48619 4.65112 4.69895 4.71118 4.77163 4.88116 4.93496 5.09439 5.26576 5.34561 5.49013 5.70214 5.71251 6.11927 6.18688 6.48051 6.83462 6.94329 6.97390 7.19958 8.61129 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.021282 B = 0.001682 C = 0.001590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.375825 B =16643.672953 C =17606.641231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.121 4.121 3 C -0.003 4.003 4 N -0.362 5.362 5 O 0.113 5.887 6 C -0.108 4.108 7 C 0.604 3.396 8 O -0.541 6.541 9 N -0.696 5.696 10 C 0.129 3.871 11 C -0.143 4.143 12 C -0.139 4.139 13 C 0.129 3.871 14 N -0.706 5.706 15 C 0.533 3.467 16 O -0.565 6.565 17 C -0.110 4.110 18 S -0.180 6.180 19 C -0.528 4.528 20 H 0.064 0.936 21 C 0.046 3.954 22 N -0.916 5.916 23 Si 0.913 3.087 24 H -0.263 1.263 25 H -0.259 1.259 26 H -0.237 1.237 27 H 0.089 0.911 28 H 0.070 0.930 29 H 0.100 0.900 30 H 0.232 0.768 31 H 0.421 0.579 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.158 0.842 35 H 0.153 0.847 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.419 0.581 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.194 30.721 -12.575 36.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.125 4.125 3 C -0.181 4.181 4 N -0.063 5.063 5 O 0.041 5.959 6 C -0.174 4.174 7 C 0.388 3.612 8 O -0.419 6.419 9 N -0.347 5.347 10 C 0.007 3.993 11 C -0.162 4.162 12 C -0.158 4.158 13 C 0.006 3.994 14 N -0.360 5.360 15 C 0.318 3.682 16 O -0.444 6.444 17 C -0.261 4.261 18 S 0.047 5.953 19 C -0.676 4.676 20 H 0.082 0.918 21 C -0.159 4.159 22 N -0.554 5.554 23 Si 0.735 3.265 24 H -0.188 1.188 25 H -0.183 1.183 26 H -0.161 1.161 27 H 0.107 0.893 28 H 0.089 0.911 29 H 0.119 0.881 30 H 0.249 0.751 31 H 0.259 0.741 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.175 0.825 35 H 0.171 0.829 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.257 0.743 39 H 0.133 0.867 40 H 0.135 0.865 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 13.415 32.034 -11.349 36.537 hybrid contribution -0.012 -1.435 -0.565 1.543 sum 13.403 30.599 -11.914 35.467 Atomic orbital electron populations 1.20400 0.85376 1.04553 1.04096 1.22015 0.99869 0.90436 1.00209 1.25558 0.86626 1.03463 1.02436 1.73748 1.24178 0.91306 1.17065 1.84931 1.27823 1.15580 1.67586 1.23919 0.85314 0.95961 1.12184 1.16604 0.85459 0.82113 0.77034 1.90886 1.18584 1.81102 1.51347 1.45708 1.10243 1.05702 1.73094 1.20681 0.96976 0.78505 1.03181 1.22938 0.97914 0.96878 0.98513 1.22948 0.98450 0.99989 0.94424 1.20624 0.97971 0.80585 1.00223 1.45654 1.35783 1.09314 1.45269 1.20004 0.79852 0.88971 0.79324 1.90703 1.49525 1.62967 1.41169 1.23269 1.02656 0.95595 1.04612 1.84764 1.45284 1.07549 1.57717 1.22462 1.22973 0.91622 1.30544 0.91812 1.25540 0.97922 0.94872 0.97568 1.70011 1.36199 1.06374 1.42827 0.85885 0.80298 0.80319 0.79980 1.18782 1.18313 1.16140 0.89266 0.91147 0.88134 0.75113 0.74086 0.91126 0.90189 0.82476 0.82941 0.91486 0.91377 0.74299 0.86708 0.86537 0.91382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.00 9.96 71.24 0.71 -0.30 16 2 C -0.12 -1.68 6.37 -19.45 -0.12 -1.81 16 3 C 0.00 -0.04 12.14 85.69 1.04 1.00 16 4 N -0.36 -5.68 12.04 -58.56 -0.71 -6.39 16 5 O 0.11 1.71 11.04 65.87 0.73 2.43 16 6 C -0.11 -1.73 7.29 24.38 0.18 -1.56 16 7 C 0.60 10.95 7.82 86.69 0.68 11.62 16 8 O -0.54 -13.60 15.11 -3.99 -0.06 -13.66 16 9 N -0.70 -8.56 5.55 -470.05 -2.61 -11.16 16 10 C 0.13 1.70 5.76 85.63 0.49 2.19 16 11 C -0.14 -1.06 9.63 25.64 0.25 -0.82 16 12 C -0.14 -1.29 9.63 25.64 0.25 -1.04 16 13 C 0.13 2.39 5.76 85.63 0.49 2.88 16 14 N -0.71 -15.23 5.55 -466.79 -2.59 -17.82 16 15 C 0.53 17.85 7.85 87.66 0.69 18.53 16 16 O -0.57 -24.16 15.86 -3.04 -0.05 -24.21 16 17 C -0.11 -4.05 6.16 71.23 0.44 -3.62 16 18 S -0.18 -9.08 18.55 -56.49 -1.05 -10.12 16 19 C -0.53 -30.69 10.04 67.95 0.68 -30.01 16 20 H 0.06 3.88 8.03 -2.91 -0.02 3.86 16 21 C 0.05 2.73 5.50 84.86 0.47 3.19 16 22 N -0.92 -55.71 13.97 21.65 0.30 -55.40 16 23 Si 0.91 45.19 27.74 68.60 1.90 47.09 16 24 H -0.26 -12.74 7.11 99.48 0.71 -12.04 16 25 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 26 H -0.24 -11.76 6.74 99.48 0.67 -11.09 16 27 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.07 1.16 6.73 -2.39 -0.02 1.14 16 29 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.23 0.77 8.06 -2.91 -0.02 0.75 16 31 H 0.42 2.86 8.29 -92.71 -0.77 2.09 16 32 H 0.07 1.27 5.30 -2.39 -0.01 1.26 16 33 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.16 0.31 8.06 -2.91 -0.02 0.29 16 35 H 0.15 0.73 8.06 -2.91 -0.02 0.71 16 36 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.07 1.49 5.29 -2.39 -0.01 1.47 16 38 H 0.42 6.03 8.46 -92.71 -0.78 5.25 16 39 H 0.11 3.84 8.14 -2.40 -0.02 3.82 16 40 H 0.12 3.86 8.14 -2.40 -0.02 3.84 16 41 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -81.71 373.69 1.62 -80.09 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -0.49 Total: 8.87 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: 6.24 Total: 0.28 kcal Atomic # 7 Polarization: -85.17 SS G_CDS: -5.60 Total: -90.77 kcal Atomic # 8 Polarization: -36.05 SS G_CDS: 0.62 Total: -35.43 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.90 Total: 47.09 kcal Atomic # 16 Polarization: -9.08 SS G_CDS: -1.05 Total: -10.12 kcal Total: -81.71 1.62 -80.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759645171.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.907 kcal (2) G-P(sol) polarization free energy of solvation -81.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds