Wall clock time and date at job start Tue Mar 31 2020 22:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41265 * 128.07809 * 2 1 4 4 N 1.30126 * 106.59105 * 179.97438 * 3 2 1 5 5 O 1.20893 * 111.98215 * 359.97438 * 4 3 2 6 6 C 1.34634 * 111.46584 * 0.02562 * 5 4 3 7 7 C 1.47518 * 126.94229 * 179.97438 * 6 5 4 8 8 O 1.21585 * 119.99966 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99779 * 0.02562 * 7 6 5 10 10 C 1.46504 * 119.99891 * 179.97438 * 9 7 6 11 11 C 1.50699 * 109.47095 * 180.02562 * 10 9 7 12 12 C 1.30989 * 119.99825 * 125.00467 * 11 10 9 13 13 C 1.50705 * 120.00004 * 179.97438 * 12 11 10 14 14 N 1.46504 * 109.46983 * 124.99511 * 13 12 11 15 15 C 1.34779 * 119.99794 * 180.02562 * 14 13 12 16 16 O 1.21280 * 119.99978 * 0.02562 * 15 14 13 17 17 C 1.50695 * 120.00192 * 180.02562 * 15 14 13 18 18 S 1.80997 * 109.47441 * 180.02562 * 17 15 14 19 19 C 1.76201 * 100.00192 * 179.97438 * 18 17 15 20 20 H 1.08002 * 120.00038 * 359.97438 * 19 18 17 21 21 C 1.38797 * 120.00071 * 179.97438 * 19 18 17 22 22 N 1.31631 * 119.99955 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99969 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.47176 * 90.00144 * 23 21 19 25 25 H 1.48495 * 109.47126 * 209.99692 * 23 21 19 26 26 H 1.48500 * 109.47012 * 329.99969 * 23 21 19 27 27 H 1.09004 * 109.46859 * 89.97354 * 1 2 3 28 28 H 1.08997 * 109.47091 * 209.97947 * 1 2 3 29 29 H 1.09001 * 109.47178 * 329.97930 * 1 2 3 30 30 H 1.08001 * 126.70425 * 359.95913 * 3 2 1 31 31 H 0.96993 * 120.00215 * 0.02562 * 9 7 6 32 32 H 1.09006 * 109.47100 * 300.00510 * 10 9 7 33 33 H 1.09005 * 109.46618 * 59.99822 * 10 9 7 34 34 H 1.07999 * 119.99559 * 304.99459 * 11 10 9 35 35 H 1.08000 * 120.00999 * 359.97438 * 12 11 10 36 36 H 1.09001 * 109.47395 * 244.99842 * 13 12 11 37 37 H 1.09007 * 109.47025 * 4.99902 * 13 12 11 38 38 H 0.96999 * 120.00150 * 0.02562 * 14 13 12 39 39 H 1.09001 * 109.46804 * 299.99947 * 17 15 14 40 40 H 1.08997 * 109.47513 * 59.99337 * 17 15 14 41 41 H 0.96998 * 120.00138 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3782 1.1120 0.0000 4 7 3.5890 0.6354 0.0006 5 8 3.5995 -0.5735 0.0014 6 6 2.3508 -1.0770 0.0009 7 6 1.9695 -2.5021 0.0012 8 8 0.7952 -2.8171 0.0002 9 7 2.9229 -3.4547 0.0024 10 6 2.5442 -4.8700 0.0032 11 6 3.7868 -5.7225 0.0051 12 6 3.9578 -6.6288 0.9353 13 6 5.2002 -7.4818 0.9369 14 7 5.8693 -7.3675 2.2353 15 6 7.0095 -8.0475 2.4679 16 8 7.4819 -8.7535 1.6023 17 6 7.6974 -7.9305 3.8036 18 16 9.1905 -8.9536 3.8050 19 6 9.7773 -8.6362 5.4358 20 1 9.2289 -7.9720 6.0874 21 6 10.9445 -9.2397 5.8831 22 7 11.3831 -9.0022 7.1013 23 14 11.8927 -10.3890 4.7564 24 1 12.8885 -9.6092 3.9783 25 1 12.5937 -11.4138 5.5710 26 1 10.9497 -11.0577 3.8243 27 1 -0.3633 0.0005 -1.0277 28 1 -0.3633 -0.8901 0.5135 29 1 -0.3633 0.8898 0.5142 30 1 2.0947 2.1541 -0.0006 31 1 3.8597 -3.2034 0.0035 32 1 1.9533 -5.0875 0.8930 33 1 1.9544 -5.0887 -0.8871 34 1 4.5363 -5.5862 -0.7605 35 1 3.2085 -6.7650 1.7010 36 1 4.9272 -8.5220 0.7591 37 1 5.8743 -7.1435 0.1499 38 1 5.4916 -6.8026 2.9274 39 1 7.9700 -6.8903 3.9819 40 1 7.0235 -8.2693 4.5904 41 1 12.1986 -9.4243 7.4140 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001759645172.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:36 Heat of formation + Delta-G solvation = 3.157917 kcal Electronic energy + Delta-G solvation = -24472.841989 eV Core-core repulsion = 20482.988917 eV Total energy + Delta-G solvation = -3989.853072 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.55786 -40.23933 -39.35458 -36.91940 -35.49191 -34.92980 -33.31046 -32.63158 -32.44897 -30.04296 -29.03575 -27.66299 -25.64478 -24.89803 -23.77395 -22.58210 -21.29205 -20.76562 -20.21095 -19.03430 -18.31862 -17.93229 -16.90084 -16.44932 -16.39879 -16.13643 -15.77915 -15.45006 -15.15161 -14.96817 -14.32312 -14.28340 -14.02169 -13.85585 -13.78081 -13.75225 -13.30020 -13.20237 -12.92697 -12.83124 -12.75033 -11.96099 -11.82122 -11.67090 -11.28019 -11.01960 -10.95907 -10.91130 -10.63558 -10.19333 -10.04505 -9.86191 -9.67424 -9.47761 -9.05070 -8.99375 -8.52188 -6.93681 -6.30094 -4.02197 0.23514 1.33328 1.52739 2.12062 2.40775 2.74840 2.79528 2.92118 3.31347 3.35861 3.49475 3.61457 3.66771 4.02148 4.10355 4.19320 4.31992 4.45339 4.50428 4.70023 4.73934 4.86109 5.01834 5.08059 5.08909 5.09741 5.15791 5.26699 5.30940 5.31405 5.56043 5.60899 5.69243 5.73831 5.98633 6.04532 6.13160 6.45350 6.70301 7.34984 7.53635 7.53942 7.92880 8.40356 8.42687 9.16002 10.79097 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.017957 B = 0.001577 C = 0.001492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.886707 B =17752.855764 C =18758.404931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.116 4.116 3 C -0.016 4.016 4 N -0.338 5.338 5 O 0.118 5.882 6 C -0.099 4.099 7 C 0.608 3.392 8 O -0.510 6.510 9 N -0.712 5.712 10 C 0.150 3.850 11 C -0.168 4.168 12 C -0.137 4.137 13 C 0.147 3.853 14 N -0.735 5.735 15 C 0.531 3.469 16 O -0.519 6.519 17 C -0.124 4.124 18 S -0.142 6.142 19 C -0.522 4.522 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.200 0.800 31 H 0.411 0.589 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.401 0.599 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.289 17.511 -16.064 33.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.120 4.120 3 C -0.193 4.193 4 N -0.036 5.036 5 O 0.044 5.956 6 C -0.164 4.164 7 C 0.392 3.608 8 O -0.386 6.386 9 N -0.363 5.363 10 C 0.028 3.972 11 C -0.187 4.187 12 C -0.156 4.156 13 C 0.023 3.977 14 N -0.389 5.389 15 C 0.317 3.683 16 O -0.393 6.393 17 C -0.275 4.275 18 S 0.085 5.915 19 C -0.670 4.670 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.516 5.516 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 H 0.100 0.900 28 H 0.109 0.891 29 H 0.094 0.906 30 H 0.217 0.783 31 H 0.247 0.753 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.235 0.765 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -22.999 16.608 -17.375 33.267 hybrid contribution -0.411 0.798 1.122 1.437 sum -23.410 17.406 -16.253 33.394 Atomic orbital electron populations 1.20358 0.86191 1.04339 1.03572 1.21687 0.99127 0.90271 1.00956 1.25060 0.87631 1.02267 1.04368 1.73800 1.23097 0.91093 1.15634 1.84978 1.28012 1.15598 1.66988 1.23948 0.84904 0.96097 1.11486 1.16449 0.85605 0.81515 0.77227 1.90866 1.17144 1.80611 1.49966 1.45880 1.10107 1.06217 1.74109 1.20458 0.95332 0.77946 1.03490 1.22890 0.98511 0.97149 1.00158 1.23081 0.97839 0.96285 0.98386 1.20316 0.91095 0.99765 0.86518 1.45931 1.26381 1.50456 1.16176 1.20310 0.79836 0.78780 0.89390 1.90707 1.64118 1.38218 1.46291 1.23277 1.02091 1.05628 0.96480 1.84791 1.24659 1.60217 1.21881 1.22316 1.13229 1.34253 0.97179 0.89367 1.24714 0.96080 0.95650 0.94852 1.69937 1.22663 1.42725 1.16316 0.86733 0.81812 0.81634 0.81656 1.19205 1.19924 1.15927 0.90010 0.89099 0.90561 0.78326 0.75348 0.90221 0.89786 0.85878 0.86098 0.90354 0.90907 0.76491 0.88437 0.88388 0.91928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.43 9.96 36.01 0.36 -0.08 16 2 C -0.12 -0.79 6.37 -103.99 -0.66 -1.45 16 3 C -0.02 -0.10 12.14 -17.12 -0.21 -0.31 16 4 N -0.34 -2.95 12.04 30.46 0.37 -2.58 16 5 O 0.12 0.97 11.04 15.57 0.17 1.14 16 6 C -0.10 -0.76 7.29 -36.31 -0.26 -1.02 16 7 C 0.61 4.79 7.82 -12.48 -0.10 4.69 16 8 O -0.51 -5.18 15.11 5.29 0.08 -5.10 16 9 N -0.71 -4.12 5.55 -62.53 -0.35 -4.46 16 10 C 0.15 0.79 6.11 -5.19 -0.03 0.76 16 11 C -0.17 -0.86 9.24 -36.02 -0.33 -1.19 16 12 C -0.14 -0.83 9.24 -36.02 -0.33 -1.16 16 13 C 0.15 1.38 6.11 -5.19 -0.03 1.35 16 14 N -0.73 -8.42 5.55 -61.47 -0.34 -8.76 16 15 C 0.53 8.97 7.85 -10.99 -0.09 8.89 16 16 O -0.52 -10.82 15.86 5.56 0.09 -10.73 16 17 C -0.12 -2.32 6.16 36.00 0.22 -2.10 16 18 S -0.14 -3.55 18.55 -107.50 -1.99 -5.54 16 19 C -0.52 -14.92 10.04 30.94 0.31 -14.61 16 20 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 21 C 0.10 2.78 5.50 -17.43 -0.10 2.69 16 22 N -0.88 -26.41 13.97 55.49 0.78 -25.63 16 23 Si 0.86 21.64 27.74 -169.99 -4.71 16.92 16 24 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.24 -5.92 6.74 56.52 0.38 -5.54 16 27 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.09 0.58 6.73 -51.93 -0.35 0.23 16 29 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.20 0.60 8.06 -52.49 -0.42 0.18 16 31 H 0.41 1.80 8.29 -40.82 -0.34 1.46 16 32 H 0.08 0.44 7.79 -51.93 -0.40 0.04 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.12 0.58 7.84 -52.49 -0.41 0.17 16 35 H 0.12 0.61 7.84 -52.49 -0.41 0.20 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.73 7.79 -51.93 -0.40 0.32 16 38 H 0.40 3.49 8.46 -40.82 -0.35 3.14 16 39 H 0.10 1.69 8.14 -51.91 -0.42 1.27 16 40 H 0.10 1.70 8.14 -51.92 -0.42 1.27 16 41 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 378.18 15.07 5.70 5.70 Total: -1.00 -36.17 378.18 -6.67 -42.84 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -5.20 Total: -0.23 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -1.25 Total: -3.55 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: 0.45 Total: -41.44 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: 0.34 Total: -14.69 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.71 Total: 16.92 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -1.99 Total: -5.54 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.17 -6.67 -42.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759645172.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.993 kcal (2) G-P(sol) polarization free energy of solvation -36.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds