Wall clock time and date at job start Tue Mar 31 2020 22:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41265 * 128.07809 * 2 1 4 4 N 1.30126 * 106.59105 * 179.97438 * 3 2 1 5 5 O 1.20893 * 111.98215 * 359.97438 * 4 3 2 6 6 C 1.34634 * 111.46584 * 0.02562 * 5 4 3 7 7 C 1.47518 * 126.94229 * 179.97438 * 6 5 4 8 8 O 1.21585 * 119.99966 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99779 * 0.02562 * 7 6 5 10 10 C 1.46504 * 119.99891 * 179.97438 * 9 7 6 11 11 C 1.50699 * 109.47095 * 180.02562 * 10 9 7 12 12 C 1.30989 * 119.99825 * 125.00467 * 11 10 9 13 13 C 1.50705 * 120.00004 * 179.97438 * 12 11 10 14 14 N 1.46504 * 109.46983 * 124.99511 * 13 12 11 15 15 C 1.34779 * 119.99794 * 180.02562 * 14 13 12 16 16 O 1.21280 * 119.99978 * 0.02562 * 15 14 13 17 17 C 1.50695 * 120.00192 * 180.02562 * 15 14 13 18 18 S 1.80997 * 109.47441 * 180.02562 * 17 15 14 19 19 C 1.76201 * 100.00192 * 179.97438 * 18 17 15 20 20 H 1.08002 * 120.00038 * 359.97438 * 19 18 17 21 21 C 1.38797 * 120.00071 * 179.97438 * 19 18 17 22 22 N 1.31631 * 119.99955 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99969 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.47176 * 90.00144 * 23 21 19 25 25 H 1.48495 * 109.47126 * 209.99692 * 23 21 19 26 26 H 1.48500 * 109.47012 * 329.99969 * 23 21 19 27 27 H 1.09004 * 109.46859 * 89.97354 * 1 2 3 28 28 H 1.08997 * 109.47091 * 209.97947 * 1 2 3 29 29 H 1.09001 * 109.47178 * 329.97930 * 1 2 3 30 30 H 1.08001 * 126.70425 * 359.95913 * 3 2 1 31 31 H 0.96993 * 120.00215 * 0.02562 * 9 7 6 32 32 H 1.09006 * 109.47100 * 300.00510 * 10 9 7 33 33 H 1.09005 * 109.46618 * 59.99822 * 10 9 7 34 34 H 1.07999 * 119.99559 * 304.99459 * 11 10 9 35 35 H 1.08000 * 120.00999 * 359.97438 * 12 11 10 36 36 H 1.09001 * 109.47395 * 244.99842 * 13 12 11 37 37 H 1.09007 * 109.47025 * 4.99902 * 13 12 11 38 38 H 0.96999 * 120.00150 * 0.02562 * 14 13 12 39 39 H 1.09001 * 109.46804 * 299.99947 * 17 15 14 40 40 H 1.08997 * 109.47513 * 59.99337 * 17 15 14 41 41 H 0.96998 * 120.00138 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3782 1.1120 0.0000 4 7 3.5890 0.6354 0.0006 5 8 3.5995 -0.5735 0.0014 6 6 2.3508 -1.0770 0.0009 7 6 1.9695 -2.5021 0.0012 8 8 0.7952 -2.8171 0.0002 9 7 2.9229 -3.4547 0.0024 10 6 2.5442 -4.8700 0.0032 11 6 3.7868 -5.7225 0.0051 12 6 3.9578 -6.6288 0.9353 13 6 5.2002 -7.4818 0.9369 14 7 5.8693 -7.3675 2.2353 15 6 7.0095 -8.0475 2.4679 16 8 7.4819 -8.7535 1.6023 17 6 7.6974 -7.9305 3.8036 18 16 9.1905 -8.9536 3.8050 19 6 9.7773 -8.6362 5.4358 20 1 9.2289 -7.9720 6.0874 21 6 10.9445 -9.2397 5.8831 22 7 11.3831 -9.0022 7.1013 23 14 11.8927 -10.3890 4.7564 24 1 12.8885 -9.6092 3.9783 25 1 12.5937 -11.4138 5.5710 26 1 10.9497 -11.0577 3.8243 27 1 -0.3633 0.0005 -1.0277 28 1 -0.3633 -0.8901 0.5135 29 1 -0.3633 0.8898 0.5142 30 1 2.0947 2.1541 -0.0006 31 1 3.8597 -3.2034 0.0035 32 1 1.9533 -5.0875 0.8930 33 1 1.9544 -5.0887 -0.8871 34 1 4.5363 -5.5862 -0.7605 35 1 3.2085 -6.7650 1.7010 36 1 4.9272 -8.5220 0.7591 37 1 5.8743 -7.1435 0.1499 38 1 5.4916 -6.8026 2.9274 39 1 7.9700 -6.8903 3.9819 40 1 7.0235 -8.2693 4.5904 41 1 12.1986 -9.4243 7.4140 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001759645172.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:35 Heat of formation + Delta-G solvation = -23.905790 kcal Electronic energy + Delta-G solvation = -24474.015559 eV Core-core repulsion = 20482.988917 eV Total energy + Delta-G solvation = -3991.026642 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -46.09396 -40.84348 -40.61975 -37.57427 -36.17823 -35.60432 -34.66736 -34.06031 -33.26286 -31.25424 -29.61826 -28.42235 -27.82155 -25.58761 -24.35953 -23.11033 -21.91601 -21.78782 -20.91870 -19.89665 -19.52465 -18.87933 -17.91023 -17.55509 -17.18899 -17.03604 -16.90391 -16.65563 -16.32747 -15.81860 -15.64401 -15.05746 -15.01317 -14.87693 -14.67083 -14.43462 -14.23942 -14.15331 -13.84095 -13.63644 -13.39726 -13.32033 -13.21782 -12.99646 -12.65265 -12.31617 -12.19007 -11.86036 -11.56466 -11.44907 -11.16578 -11.13599 -10.69258 -10.53536 -10.50120 -10.19265 -9.96845 -8.98809 -8.50988 -6.21793 -0.32469 0.77495 1.03532 1.04483 1.32122 1.48093 1.56059 1.57174 1.61588 1.82737 2.24619 2.25907 2.39325 2.74379 2.87343 3.16681 3.55252 3.56129 3.69880 3.90348 3.96056 4.04431 4.24109 4.28431 4.34238 4.48908 4.54873 4.55720 4.69115 4.73967 4.78453 4.84538 4.92035 5.08860 5.28343 5.34749 5.57747 5.68830 5.71176 6.12031 6.19180 6.47734 6.82337 6.94260 6.99835 7.19814 8.61324 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.017957 B = 0.001577 C = 0.001492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.886707 B =17752.855764 C =18758.404931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.119 4.119 3 C -0.007 4.007 4 N -0.366 5.366 5 O 0.109 5.891 6 C -0.111 4.111 7 C 0.609 3.391 8 O -0.537 6.537 9 N -0.702 5.702 10 C 0.151 3.849 11 C -0.148 4.148 12 C -0.138 4.138 13 C 0.146 3.854 14 N -0.709 5.709 15 C 0.535 3.465 16 O -0.563 6.563 17 C -0.112 4.112 18 S -0.177 6.177 19 C -0.530 4.530 20 H 0.062 0.938 21 C 0.045 3.955 22 N -0.917 5.917 23 Si 0.915 3.085 24 H -0.263 1.263 25 H -0.260 1.260 26 H -0.236 1.236 27 H 0.089 0.911 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.231 0.769 31 H 0.418 0.582 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.130 0.870 35 H 0.136 0.864 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.418 0.582 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.745 18.459 -17.209 36.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.124 4.124 3 C -0.184 4.184 4 N -0.067 5.067 5 O 0.037 5.963 6 C -0.177 4.177 7 C 0.393 3.607 8 O -0.415 6.415 9 N -0.353 5.353 10 C 0.029 3.971 11 C -0.167 4.167 12 C -0.158 4.158 13 C 0.023 3.977 14 N -0.363 5.363 15 C 0.320 3.680 16 O -0.442 6.442 17 C -0.263 4.263 18 S 0.050 5.950 19 C -0.677 4.677 20 H 0.081 0.919 21 C -0.160 4.160 22 N -0.555 5.555 23 Si 0.737 3.263 24 H -0.187 1.187 25 H -0.184 1.184 26 H -0.160 1.160 27 H 0.107 0.893 28 H 0.094 0.906 29 H 0.117 0.883 30 H 0.248 0.752 31 H 0.255 0.745 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.148 0.852 35 H 0.154 0.846 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.255 0.745 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -24.476 17.569 -18.506 35.359 hybrid contribution -0.130 0.651 1.450 1.595 sum -24.607 18.220 -17.057 35.049 Atomic orbital electron populations 1.20404 0.84976 1.04692 1.04131 1.22038 1.00012 0.90162 1.00182 1.25593 0.86703 1.03590 1.02502 1.73782 1.24427 0.91386 1.17116 1.84950 1.28179 1.15576 1.67587 1.24054 0.85163 0.96354 1.12120 1.16486 0.85445 0.81818 0.76978 1.90851 1.18144 1.81015 1.51493 1.45848 1.10248 1.06201 1.73041 1.20478 0.95345 0.77507 1.03792 1.22888 0.98195 0.96056 0.99600 1.22876 0.96903 0.96371 0.99621 1.20415 0.92116 1.00247 0.84916 1.45714 1.24381 1.48678 1.17524 1.19940 0.80967 0.79039 0.88022 1.90696 1.65730 1.40534 1.47224 1.23278 0.99366 1.05040 0.98611 1.84708 1.28547 1.62441 1.19319 1.22474 1.13178 1.33463 0.98610 0.91933 1.25569 0.97083 0.97158 0.96192 1.70017 1.23521 1.44071 1.17885 0.85862 0.80484 0.80042 0.79952 1.18727 1.18387 1.16018 0.89264 0.90629 0.88269 0.75249 0.74481 0.90008 0.89500 0.85226 0.84583 0.91036 0.91314 0.74522 0.86824 0.86746 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.72 9.96 71.24 0.71 -0.01 16 2 C -0.12 -1.47 6.37 -19.45 -0.12 -1.59 16 3 C -0.01 -0.07 12.14 85.69 1.04 0.97 16 4 N -0.37 -6.06 12.04 -58.54 -0.70 -6.77 16 5 O 0.11 1.72 11.04 65.89 0.73 2.44 16 6 C -0.11 -1.63 7.29 24.39 0.18 -1.45 16 7 C 0.61 9.09 7.82 86.69 0.68 9.76 16 8 O -0.54 -10.59 15.11 -3.98 -0.06 -10.65 16 9 N -0.70 -7.12 5.55 -470.01 -2.61 -9.72 16 10 C 0.15 1.29 6.11 85.63 0.52 1.81 16 11 C -0.15 -1.15 9.24 25.66 0.24 -0.91 16 12 C -0.14 -1.31 9.24 25.66 0.24 -1.08 16 13 C 0.15 2.45 6.11 85.63 0.52 2.97 16 14 N -0.71 -14.64 5.55 -466.77 -2.59 -17.23 16 15 C 0.53 17.30 7.85 87.66 0.69 17.99 16 16 O -0.56 -23.12 15.86 -3.03 -0.05 -23.16 16 17 C -0.11 -4.05 6.16 71.23 0.44 -3.61 16 18 S -0.18 -8.80 18.55 -56.49 -1.05 -9.85 16 19 C -0.53 -30.60 10.04 67.95 0.68 -29.92 16 20 H 0.06 3.80 8.03 -2.91 -0.02 3.78 16 21 C 0.05 2.65 5.50 84.86 0.47 3.12 16 22 N -0.92 -55.62 13.97 21.65 0.30 -55.32 16 23 Si 0.91 44.75 27.74 68.60 1.90 46.65 16 24 H -0.26 -12.54 7.11 99.48 0.71 -11.83 16 25 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 26 H -0.24 -11.52 6.74 99.48 0.67 -10.85 16 27 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.07 0.91 6.73 -2.39 -0.02 0.89 16 29 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.23 0.76 8.06 -2.91 -0.02 0.74 16 31 H 0.42 3.04 8.29 -92.71 -0.77 2.27 16 32 H 0.08 0.72 7.79 -2.38 -0.02 0.71 16 33 H 0.09 0.76 8.14 -2.38 -0.02 0.75 16 34 H 0.13 0.89 7.84 -2.91 -0.02 0.87 16 35 H 0.14 0.94 7.84 -2.91 -0.02 0.92 16 36 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.07 1.25 7.79 -2.38 -0.02 1.24 16 38 H 0.42 6.00 8.46 -92.71 -0.78 5.22 16 39 H 0.11 3.76 8.14 -2.40 -0.02 3.74 16 40 H 0.11 3.78 8.14 -2.40 -0.02 3.76 16 41 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -79.20 378.18 1.65 -77.55 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -0.50 Total: 8.01 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: 6.28 Total: -1.96 kcal Atomic # 7 Polarization: -83.43 SS G_CDS: -5.60 Total: -89.03 kcal Atomic # 8 Polarization: -31.99 SS G_CDS: 0.62 Total: -31.37 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.90 Total: 46.65 kcal Atomic # 16 Polarization: -8.80 SS G_CDS: -1.05 Total: -9.85 kcal Total: -79.20 1.65 -77.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759645172.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.646 kcal (2) G-P(sol) polarization free energy of solvation -79.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds