Wall clock time and date at job start Tue Mar 31 2020 22:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29936 * 125.37971 * 2 1 4 4 C 1.36064 * 108.47666 * 180.02562 * 3 2 1 5 5 C 1.47426 * 126.44703 * 179.97438 * 4 3 2 6 6 O 1.21611 * 119.99791 * 180.02562 * 5 4 3 7 7 N 1.34769 * 119.99891 * 0.03941 * 5 4 3 8 8 C 1.46503 * 119.99974 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.47355 * 184.97642 * 8 7 5 10 10 H 1.09003 * 112.78279 * 314.88665 * 9 8 7 11 11 C 1.53755 * 113.55226 * 85.74085 * 9 8 7 12 12 C 1.53500 * 83.25862 * 140.99071 * 11 9 8 13 13 N 1.47070 * 113.46947 * 184.10333 * 9 8 7 14 14 C 1.34769 * 136.05848 * 38.14049 * 13 9 8 15 15 O 1.21288 * 119.99831 * 354.63927 * 14 13 9 16 16 C 1.50698 * 120.00200 * 174.64564 * 14 13 9 17 17 S 1.81004 * 109.47177 * 179.97438 * 16 14 13 18 18 C 1.76194 * 100.00009 * 179.97438 * 17 16 14 19 19 H 1.08003 * 120.00305 * 359.97438 * 18 17 16 20 20 C 1.38805 * 120.00055 * 180.27708 * 18 17 16 21 21 N 1.31632 * 119.99833 * 179.72140 * 20 18 17 22 22 Si 1.86798 * 119.99682 * 359.71894 * 20 18 17 23 23 H 1.48509 * 109.46837 * 90.00617 * 22 20 18 24 24 H 1.48498 * 109.46963 * 209.99884 * 22 20 18 25 25 H 1.48497 * 109.47244 * 330.00457 * 22 20 18 26 26 C 1.36090 * 107.10720 * 0.27133 * 4 3 2 27 27 O 1.34052 * 125.37728 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.46829 * 89.99761 * 1 2 3 29 29 H 1.08997 * 109.46686 * 209.99688 * 1 2 3 30 30 H 1.09000 * 109.46852 * 329.99644 * 1 2 3 31 31 H 0.97000 * 120.00235 * 359.97438 * 7 5 4 32 32 H 1.08999 * 109.47114 * 64.97644 * 8 7 5 33 33 H 1.08995 * 109.47290 * 304.97639 * 8 7 5 34 34 H 1.08999 * 114.39452 * 27.42469 * 11 9 8 35 35 H 1.09004 * 114.26885 * 254.53986 * 11 9 8 36 36 H 1.08998 * 113.46473 * 218.98786 * 12 11 9 37 37 H 1.08998 * 113.46976 * 88.54857 * 12 11 9 38 38 H 1.08996 * 109.47639 * 59.99297 * 16 14 13 39 39 H 1.09001 * 109.46871 * 299.99064 * 16 14 13 40 40 H 0.97002 * 119.99527 * 179.97438 * 21 20 18 41 41 H 1.07999 * 126.52722 * 179.73871 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5612 0.6638 -0.0006 5 6 4.7440 1.5438 -0.0013 6 8 5.8605 1.0618 -0.0023 7 7 4.5879 2.8824 -0.0007 8 6 5.7633 3.7570 -0.0008 9 6 5.3147 5.2143 0.1251 10 1 4.4768 5.4560 -0.5287 11 6 5.1081 5.6700 1.5790 12 6 5.7401 6.9729 1.0698 13 7 6.4225 6.1777 0.0379 14 6 7.5595 6.2869 -0.6773 15 8 7.9000 5.3872 -1.4161 16 6 8.4080 7.5267 -0.5591 17 16 9.8558 7.3718 -1.6343 18 6 10.6456 8.9126 -1.3078 19 1 10.2018 9.6105 -0.6133 20 6 11.8351 9.2321 -1.9479 21 7 12.4223 10.3856 -1.7080 22 14 12.6026 8.0253 -3.1495 23 1 12.0849 8.2905 -4.5159 24 1 14.0786 8.1876 -3.1393 25 1 12.2542 6.6385 -2.7487 26 6 3.5661 -0.6971 -0.0071 27 8 2.2831 -1.0930 -0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3632 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 3.6974 3.2669 -0.0001 32 1 6.3138 3.6255 -0.9323 33 1 6.4068 3.5009 0.8408 34 1 5.7148 5.1345 2.3092 35 1 4.0632 5.7658 1.8743 36 1 6.4221 7.4329 1.7849 37 1 5.0143 7.6782 0.6651 38 1 8.7342 7.6467 0.4740 39 1 7.8238 8.3967 -0.8590 40 1 13.2538 10.6087 -2.1551 41 1 4.4362 -1.3368 -0.0132 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001759830380.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:36 Heat of formation + Delta-G solvation = -7.114528 kcal Electronic energy + Delta-G solvation = -25546.416286 eV Core-core repulsion = 21556.117768 eV Total energy + Delta-G solvation = -3990.298518 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.88519 -40.67455 -39.51457 -37.63318 -35.39823 -34.85569 -32.72911 -32.43663 -30.89896 -29.00738 -28.31334 -28.10618 -25.60807 -24.76923 -23.02997 -22.24931 -21.88320 -20.90887 -19.25760 -18.42692 -17.70928 -17.38796 -16.92766 -16.78923 -16.40222 -15.65536 -15.42172 -15.23314 -14.91965 -14.73235 -14.42390 -14.30155 -13.92537 -13.76529 -13.74675 -13.64825 -13.09211 -12.89273 -12.85565 -12.69749 -12.20763 -12.03956 -11.72807 -11.69242 -11.32084 -11.25657 -11.00008 -10.93936 -10.62362 -10.47978 -9.84997 -9.58913 -9.47383 -9.18993 -8.99926 -8.75014 -8.49941 -6.92012 -6.28681 -4.00567 0.68549 1.54970 2.09566 2.39225 2.82002 2.92107 2.99189 3.16527 3.34098 3.42314 3.52162 3.58628 4.02147 4.32840 4.33557 4.35973 4.47747 4.56939 4.72688 4.74766 4.78825 4.81550 4.96165 5.01173 5.10441 5.14931 5.15588 5.24468 5.29510 5.45565 5.56760 5.62363 5.69593 5.74166 5.89743 5.95524 6.01156 6.18227 6.92038 7.25166 7.71864 7.87904 7.94347 8.39199 8.41613 9.17522 10.80458 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.023786 B = 0.001974 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.905085 B =14183.944082 C =15043.272735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.197 3.803 3 N -0.463 5.463 4 C -0.070 4.070 5 C 0.601 3.399 6 O -0.529 6.529 7 N -0.708 5.708 8 C 0.112 3.888 9 C 0.124 3.876 10 H 0.097 0.903 11 C -0.151 4.151 12 C 0.101 3.899 13 N -0.646 5.646 14 C 0.560 3.440 15 O -0.511 6.511 16 C -0.115 4.115 17 S -0.141 6.141 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.880 5.880 22 Si 0.856 3.144 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.014 3.986 27 O -0.197 6.197 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.103 0.897 31 H 0.408 0.592 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.271 0.729 41 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.418 -18.327 8.335 34.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.012 4.012 3 N -0.194 5.194 4 C -0.190 4.190 5 C 0.386 3.614 6 O -0.406 6.406 7 N -0.359 5.359 8 C -0.012 4.012 9 C 0.019 3.981 10 H 0.115 0.885 11 C -0.189 4.189 12 C -0.022 4.022 13 N -0.385 5.385 14 C 0.349 3.651 15 O -0.384 6.384 16 C -0.265 4.265 17 S 0.086 5.914 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.516 5.516 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.059 4.059 27 O -0.083 6.083 28 H 0.114 0.886 29 H 0.109 0.891 30 H 0.122 0.878 31 H 0.243 0.757 32 H 0.108 0.892 33 H 0.098 0.902 34 H 0.116 0.884 35 H 0.109 0.891 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.081 0.919 41 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -26.927 -19.214 7.060 33.824 hybrid contribution 0.030 0.470 0.245 0.532 sum -26.897 -18.743 7.305 33.587 Atomic orbital electron populations 1.20334 0.80765 1.05464 1.05066 1.26359 0.96708 0.78287 0.99893 1.70746 1.00664 1.30023 1.17989 1.21772 0.92039 0.93099 1.12107 1.16686 0.86190 0.81799 0.76740 1.90884 1.24248 1.75260 1.50177 1.45602 1.10602 1.05372 1.74367 1.21677 0.87326 0.87344 1.04813 1.22826 0.89397 0.89404 0.96431 0.88505 1.23632 1.02374 0.97203 0.95689 1.22927 0.95210 0.95067 0.89043 1.49706 1.20275 1.25872 1.42652 1.19969 0.79046 0.88287 0.77763 1.90726 1.69842 1.40561 1.37308 1.23216 1.00330 0.97452 1.05551 1.84822 1.21481 1.27870 1.57273 1.22305 1.11208 1.01565 1.31822 0.89383 1.24706 0.95591 0.95075 0.95885 1.69940 1.18269 1.21250 1.42181 0.86740 0.79256 0.83736 0.82171 1.19196 1.19896 1.15894 1.25328 0.84805 0.95711 1.00099 1.84405 1.16750 1.37906 1.69240 0.88590 0.89060 0.87792 0.75685 0.89197 0.90224 0.88383 0.89082 0.89803 0.89550 0.88540 0.88554 0.91935 0.75178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.13 10.51 36.01 0.38 0.25 16 2 C 0.20 1.36 8.30 -13.08 -0.11 1.25 16 3 N -0.46 -4.24 11.06 -7.65 -0.08 -4.32 16 4 C -0.07 -0.73 6.99 -83.02 -0.58 -1.31 16 5 C 0.60 7.56 7.81 -12.52 -0.10 7.46 16 6 O -0.53 -8.49 16.89 5.27 0.09 -8.40 16 7 N -0.71 -7.56 5.55 -61.39 -0.34 -7.90 16 8 C 0.11 1.41 5.40 -4.04 -0.02 1.38 16 9 C 0.12 1.26 4.09 -72.26 -0.30 0.97 16 10 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 11 C -0.15 -1.09 8.03 -26.08 -0.21 -1.29 16 12 C 0.10 0.88 8.41 -8.50 -0.07 0.81 16 13 N -0.65 -8.67 3.56 -177.27 -0.63 -9.30 16 14 C 0.56 10.41 8.02 -10.99 -0.09 10.32 16 15 O -0.51 -11.42 15.24 5.55 0.08 -11.33 16 16 C -0.12 -2.30 5.99 36.00 0.22 -2.08 16 17 S -0.14 -3.65 18.55 -107.50 -1.99 -5.64 16 18 C -0.52 -15.19 10.04 30.94 0.31 -14.88 16 19 H 0.09 2.66 8.03 -52.48 -0.42 2.24 16 20 C 0.10 2.84 5.50 -17.43 -0.10 2.74 16 21 N -0.88 -26.71 13.97 55.49 0.78 -25.94 16 22 Si 0.86 22.10 27.73 -169.99 -4.71 17.38 16 23 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.23 -6.09 6.74 56.52 0.38 -5.71 16 26 C 0.01 0.12 11.95 29.96 0.36 0.48 16 27 O -0.20 -1.49 10.73 6.49 0.07 -1.42 16 28 H 0.10 0.11 8.14 -51.93 -0.42 -0.32 16 29 H 0.09 0.06 8.14 -51.93 -0.42 -0.37 16 30 H 0.10 0.15 8.14 -51.93 -0.42 -0.28 16 31 H 0.41 3.41 8.21 -40.82 -0.34 3.07 16 32 H 0.09 1.47 7.05 -51.93 -0.37 1.10 16 33 H 0.08 1.08 7.90 -51.93 -0.41 0.67 16 34 H 0.10 0.75 7.97 -51.93 -0.41 0.34 16 35 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.10 1.81 8.14 -51.92 -0.42 1.38 16 39 H 0.10 1.80 8.14 -51.92 -0.42 1.38 16 40 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 41 H 0.23 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 374.08 15.07 5.64 5.64 Total: -1.00 -38.59 374.08 -6.75 -45.33 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -5.33 Total: -0.20 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: -0.31 Total: 6.11 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: -0.28 Total: -47.46 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: 0.24 Total: -21.15 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.71 Total: 17.38 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -38.59 -6.75 -45.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759830380.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.216 kcal (2) G-P(sol) polarization free energy of solvation -38.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds