Wall clock time and date at job start Tue Mar 31 2020 22:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29936 * 125.37971 * 2 1 4 4 C 1.36064 * 108.47666 * 180.02562 * 3 2 1 5 5 C 1.47426 * 126.44703 * 179.97438 * 4 3 2 6 6 O 1.21611 * 119.99791 * 180.02562 * 5 4 3 7 7 N 1.34769 * 119.99891 * 0.03941 * 5 4 3 8 8 C 1.46503 * 119.99974 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.47355 * 184.97642 * 8 7 5 10 10 H 1.09003 * 112.78279 * 314.88665 * 9 8 7 11 11 C 1.53755 * 113.55226 * 85.74085 * 9 8 7 12 12 C 1.53500 * 83.25862 * 140.99071 * 11 9 8 13 13 N 1.47070 * 113.46947 * 184.10333 * 9 8 7 14 14 C 1.34769 * 136.05848 * 38.14049 * 13 9 8 15 15 O 1.21288 * 119.99831 * 354.63927 * 14 13 9 16 16 C 1.50698 * 120.00200 * 174.64564 * 14 13 9 17 17 S 1.81004 * 109.47177 * 179.97438 * 16 14 13 18 18 C 1.76194 * 100.00009 * 179.97438 * 17 16 14 19 19 H 1.08003 * 120.00305 * 359.97438 * 18 17 16 20 20 C 1.38805 * 120.00055 * 180.27708 * 18 17 16 21 21 N 1.31632 * 119.99833 * 179.72140 * 20 18 17 22 22 Si 1.86798 * 119.99682 * 359.71894 * 20 18 17 23 23 H 1.48509 * 109.46837 * 90.00617 * 22 20 18 24 24 H 1.48498 * 109.46963 * 209.99884 * 22 20 18 25 25 H 1.48497 * 109.47244 * 330.00457 * 22 20 18 26 26 C 1.36090 * 107.10720 * 0.27133 * 4 3 2 27 27 O 1.34052 * 125.37728 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.46829 * 89.99761 * 1 2 3 29 29 H 1.08997 * 109.46686 * 209.99688 * 1 2 3 30 30 H 1.09000 * 109.46852 * 329.99644 * 1 2 3 31 31 H 0.97000 * 120.00235 * 359.97438 * 7 5 4 32 32 H 1.08999 * 109.47114 * 64.97644 * 8 7 5 33 33 H 1.08995 * 109.47290 * 304.97639 * 8 7 5 34 34 H 1.08999 * 114.39452 * 27.42469 * 11 9 8 35 35 H 1.09004 * 114.26885 * 254.53986 * 11 9 8 36 36 H 1.08998 * 113.46473 * 218.98786 * 12 11 9 37 37 H 1.08998 * 113.46976 * 88.54857 * 12 11 9 38 38 H 1.08996 * 109.47639 * 59.99297 * 16 14 13 39 39 H 1.09001 * 109.46871 * 299.99064 * 16 14 13 40 40 H 0.97002 * 119.99527 * 179.97438 * 21 20 18 41 41 H 1.07999 * 126.52722 * 179.73871 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5612 0.6638 -0.0006 5 6 4.7440 1.5438 -0.0013 6 8 5.8605 1.0618 -0.0023 7 7 4.5879 2.8824 -0.0007 8 6 5.7633 3.7570 -0.0008 9 6 5.3147 5.2143 0.1251 10 1 4.4768 5.4560 -0.5287 11 6 5.1081 5.6700 1.5790 12 6 5.7401 6.9729 1.0698 13 7 6.4225 6.1777 0.0379 14 6 7.5595 6.2869 -0.6773 15 8 7.9000 5.3872 -1.4161 16 6 8.4080 7.5267 -0.5591 17 16 9.8558 7.3718 -1.6343 18 6 10.6456 8.9126 -1.3078 19 1 10.2018 9.6105 -0.6133 20 6 11.8351 9.2321 -1.9479 21 7 12.4223 10.3856 -1.7080 22 14 12.6026 8.0253 -3.1495 23 1 12.0849 8.2905 -4.5159 24 1 14.0786 8.1876 -3.1393 25 1 12.2542 6.6385 -2.7487 26 6 3.5661 -0.6971 -0.0071 27 8 2.2831 -1.0930 -0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3632 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 3.6974 3.2669 -0.0001 32 1 6.3138 3.6255 -0.9323 33 1 6.4068 3.5009 0.8408 34 1 5.7148 5.1345 2.3092 35 1 4.0632 5.7658 1.8743 36 1 6.4221 7.4329 1.7849 37 1 5.0143 7.6782 0.6651 38 1 8.7342 7.6467 0.4740 39 1 7.8238 8.3967 -0.8590 40 1 13.2538 10.6087 -2.1551 41 1 4.4362 -1.3368 -0.0132 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001759830380.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:35 Heat of formation + Delta-G solvation = -39.343061 kcal Electronic energy + Delta-G solvation = -25547.813820 eV Core-core repulsion = 21556.117768 eV Total energy + Delta-G solvation = -3991.696052 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.49044 -41.69553 -40.54840 -38.95626 -36.14275 -35.76455 -34.70073 -33.19369 -32.25016 -29.86996 -29.52738 -28.67721 -27.86534 -25.54616 -23.82535 -23.24038 -22.49818 -21.77942 -20.41603 -19.71357 -19.15648 -18.08650 -17.97965 -17.60628 -17.47593 -17.16311 -16.77766 -16.52322 -16.36034 -15.78260 -15.68616 -15.21120 -14.93957 -14.86318 -14.75350 -14.59862 -14.01900 -13.89600 -13.87518 -13.52359 -13.33151 -13.25485 -13.05099 -12.96976 -12.70741 -12.46241 -12.37125 -11.97226 -11.89472 -11.80989 -11.47140 -11.19793 -10.94509 -10.57468 -10.36856 -10.00546 -9.84353 -9.04210 -8.54366 -6.25737 -0.00128 0.89665 0.90367 1.28400 1.35502 1.47091 1.48135 1.55904 1.75979 2.10635 2.16077 2.22627 2.64578 2.83756 2.84592 3.24155 3.54689 3.61037 3.71500 3.75311 3.95544 3.97547 4.15911 4.38381 4.39681 4.43859 4.49280 4.53566 4.63122 4.68881 4.70192 4.74172 4.83556 4.93201 4.95965 5.14926 5.25379 5.29747 5.68178 6.08276 6.17994 6.51273 6.55294 6.90831 6.95702 7.02867 8.57938 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.023786 B = 0.001974 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.905085 B =14183.944082 C =15043.272735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.204 3.796 3 N -0.483 5.483 4 C -0.098 4.098 5 C 0.598 3.402 6 O -0.575 6.575 7 N -0.692 5.692 8 C 0.121 3.879 9 C 0.121 3.879 10 H 0.125 0.875 11 C -0.127 4.127 12 C 0.095 3.905 13 N -0.648 5.648 14 C 0.557 3.443 15 O -0.562 6.562 16 C -0.099 4.099 17 S -0.179 6.179 18 C -0.528 4.528 19 H 0.064 0.936 20 C 0.048 3.952 21 N -0.914 5.914 22 Si 0.912 3.088 23 H -0.262 1.262 24 H -0.257 1.257 25 H -0.241 1.241 26 C 0.024 3.976 27 O -0.196 6.196 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.115 0.885 31 H 0.422 0.578 32 H 0.046 0.954 33 H 0.063 0.937 34 H 0.093 0.907 35 H 0.135 0.865 36 H 0.089 0.911 37 H 0.117 0.883 38 H 0.109 0.891 39 H 0.111 0.889 40 H 0.278 0.722 41 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.841 -19.045 9.246 38.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.006 4.006 3 N -0.214 5.214 4 C -0.217 4.217 5 C 0.384 3.616 6 O -0.455 6.455 7 N -0.344 5.344 8 C -0.004 4.004 9 C 0.018 3.982 10 H 0.142 0.858 11 C -0.164 4.164 12 C -0.026 4.026 13 N -0.385 5.385 14 C 0.346 3.654 15 O -0.440 6.440 16 C -0.249 4.249 17 S 0.048 5.952 18 C -0.676 4.676 19 H 0.082 0.918 20 C -0.157 4.157 21 N -0.552 5.552 22 Si 0.734 3.266 23 H -0.186 1.186 24 H -0.181 1.181 25 H -0.165 1.165 26 C -0.050 4.050 27 O -0.083 6.083 28 H 0.130 0.870 29 H 0.130 0.870 30 H 0.133 0.867 31 H 0.260 0.740 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.112 0.888 35 H 0.153 0.847 36 H 0.108 0.892 37 H 0.134 0.866 38 H 0.127 0.873 39 H 0.129 0.871 40 H 0.087 0.913 41 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -30.433 -19.882 8.021 37.226 hybrid contribution 0.850 0.668 0.082 1.084 sum -29.583 -19.214 8.103 36.194 Atomic orbital electron populations 1.20650 0.77420 1.07017 1.06498 1.27367 0.98180 0.77499 0.97509 1.70714 1.00110 1.31023 1.19529 1.21538 0.91976 0.93522 1.14621 1.17056 0.86370 0.82375 0.75776 1.90852 1.26143 1.76062 1.52395 1.45426 1.10701 1.04780 1.73490 1.21417 0.87621 0.89474 1.01843 1.23219 0.88453 0.86958 0.99562 0.85785 1.23593 1.04734 0.95114 0.92994 1.23369 0.95341 0.96107 0.87734 1.49776 1.19317 1.27750 1.41642 1.19611 0.80547 0.87092 0.78115 1.90707 1.71605 1.41829 1.39904 1.23153 0.98035 0.99258 1.04500 1.84786 1.24834 1.26049 1.59570 1.22425 1.11551 1.02463 1.31148 0.91819 1.25520 0.96126 0.96631 0.97471 1.70009 1.19041 1.22730 1.43405 0.85898 0.79265 0.81275 0.80124 1.18623 1.18081 1.16484 1.25692 0.85646 0.95335 0.98365 1.84450 1.16449 1.38190 1.69179 0.87028 0.87026 0.86656 0.74032 0.93557 0.91843 0.88841 0.84742 0.89231 0.86557 0.87279 0.87063 0.91295 0.73456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.08 10.51 71.24 0.75 0.67 16 2 C 0.20 2.38 8.30 88.39 0.73 3.12 16 3 N -0.48 -8.11 11.06 -293.03 -3.24 -11.35 16 4 C -0.10 -1.99 6.99 40.41 0.28 -1.70 16 5 C 0.60 15.36 7.81 86.66 0.68 16.04 16 6 O -0.57 -19.41 16.89 -4.06 -0.07 -19.48 16 7 N -0.69 -14.57 5.55 -466.38 -2.59 -17.16 16 8 C 0.12 3.08 5.40 86.38 0.47 3.55 16 9 C 0.12 2.22 4.09 41.88 0.17 2.39 16 10 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 11 C -0.13 -1.33 8.03 31.02 0.25 -1.08 16 12 C 0.10 1.33 8.41 83.18 0.70 2.03 16 13 N -0.65 -16.37 3.56 -833.15 -2.97 -19.34 16 14 C 0.56 20.75 8.02 87.66 0.70 21.45 16 15 O -0.56 -26.00 15.24 -3.05 -0.05 -26.04 16 16 C -0.10 -3.93 5.99 71.24 0.43 -3.50 16 17 S -0.18 -9.42 18.55 -56.49 -1.05 -10.47 16 18 C -0.53 -31.39 10.04 67.96 0.68 -30.71 16 19 H 0.06 3.96 8.03 -2.91 -0.02 3.94 16 20 C 0.05 2.88 5.50 84.86 0.47 3.35 16 21 N -0.91 -56.18 13.97 21.65 0.30 -55.87 16 22 Si 0.91 46.13 27.73 68.60 1.90 48.03 16 23 H -0.26 -12.88 7.11 99.48 0.71 -12.18 16 24 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 25 H -0.24 -12.32 6.74 99.48 0.67 -11.65 16 26 C 0.02 0.38 11.95 67.32 0.80 1.18 16 27 O -0.20 -2.63 10.73 0.29 0.00 -2.62 16 28 H 0.11 -0.13 8.14 -2.39 -0.02 -0.15 16 29 H 0.11 -0.27 8.14 -2.39 -0.02 -0.29 16 30 H 0.11 -0.06 8.14 -2.39 -0.02 -0.08 16 31 H 0.42 6.37 8.21 -92.71 -0.76 5.61 16 32 H 0.05 1.61 7.05 -2.39 -0.02 1.60 16 33 H 0.06 1.80 7.90 -2.39 -0.02 1.78 16 34 H 0.09 1.15 7.97 -2.39 -0.02 1.13 16 35 H 0.13 0.41 8.14 -2.38 -0.02 0.39 16 36 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.11 4.03 8.14 -2.40 -0.02 4.01 16 39 H 0.11 4.07 8.14 -2.39 -0.02 4.05 16 40 H 0.28 15.76 8.31 -92.71 -0.77 14.99 16 41 H 0.25 2.70 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -88.85 374.08 -0.36 -89.21 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: 0.28 Total: 8.31 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: 7.11 Total: 16.78 kcal Atomic # 7 Polarization: -95.23 SS G_CDS: -8.49 Total: -103.73 kcal Atomic # 8 Polarization: -48.03 SS G_CDS: -0.11 Total: -48.14 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 1.90 Total: 48.03 kcal Atomic # 16 Polarization: -9.42 SS G_CDS: -1.05 Total: -10.47 kcal Total: -88.85 -0.36 -89.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759830380.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.871 kcal (2) G-P(sol) polarization free energy of solvation -88.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds