Wall clock time and date at job start Tue Mar 31 2020 22:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36879 * 119.99748 * 2 1 4 4 H 1.07993 * 120.00441 * 154.02511 * 3 2 1 5 5 C 1.39057 * 119.99461 * 334.02159 * 3 2 1 6 6 N 1.31356 * 120.00556 * 349.61756 * 5 3 2 7 7 Si 1.86805 * 119.99454 * 169.61392 * 5 3 2 8 8 H 1.48493 * 109.47272 * 0.02562 * 7 5 3 9 9 H 1.48497 * 109.46774 * 120.00240 * 7 5 3 10 10 H 1.48501 * 109.46915 * 240.00197 * 7 5 3 11 11 C 1.34767 * 120.00350 * 179.97438 * 2 1 3 12 12 O 1.21594 * 119.99987 * 186.00766 * 11 2 1 13 13 C 1.47732 * 120.00041 * 6.01104 * 11 2 1 14 14 C 1.39697 * 120.12195 * 214.95809 * 13 11 2 15 15 C 1.37952 * 119.98597 * 179.97438 * 14 13 11 16 16 C 1.38284 * 120.22068 * 0.02562 * 15 14 13 17 17 C 1.38937 * 120.24317 * 359.97438 * 16 15 14 18 18 N 1.40203 * 119.99367 * 179.97438 * 17 16 15 19 19 C 1.35217 * 126.05390 * 4.97487 * 18 17 16 20 20 C 1.35322 * 107.71638 * 180.02562 * 19 18 17 21 21 C 1.39919 * 107.92568 * 359.97438 * 20 19 18 22 22 C 1.50706 * 125.87349 * 180.02562 * 21 20 19 23 23 F 1.39904 * 109.46819 * 184.98522 * 22 21 20 24 24 F 1.39896 * 109.47368 * 304.98322 * 22 21 20 25 25 F 1.39894 * 109.47344 * 64.98760 * 22 21 20 26 26 N 1.30872 * 108.24987 * 0.02562 * 21 20 19 27 27 C 1.38577 * 120.01215 * 0.24828 * 17 16 15 28 28 H 1.09006 * 109.47151 * 204.95453 * 1 2 3 29 29 H 1.08996 * 109.47806 * 324.95487 * 1 2 3 30 30 H 1.09001 * 109.46787 * 84.95775 * 1 2 3 31 31 H 0.96997 * 120.00257 * 179.97438 * 6 5 3 32 32 H 1.08002 * 120.00626 * 359.97438 * 14 13 11 33 33 H 1.07992 * 119.89193 * 180.02562 * 15 14 13 34 34 H 1.08003 * 119.87572 * 179.97438 * 16 15 14 35 35 H 1.08002 * 126.14603 * 359.97438 * 19 18 17 36 36 H 1.07993 * 126.03505 * 179.97438 * 20 19 18 37 37 H 1.08000 * 120.11128 * 179.72744 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1493 1.1854 0.0000 4 1 3.1474 1.2328 0.4096 5 6 1.5593 2.3288 -0.5275 6 7 0.4383 2.2361 -1.2060 7 14 2.3608 3.9965 -0.2711 8 1 3.6061 3.8308 0.5204 9 1 2.6889 4.5959 -1.5896 10 1 1.4246 4.8886 0.4590 11 6 2.1389 -1.1671 0.0005 12 8 3.3498 -1.1698 0.1107 13 6 1.4064 -2.4431 -0.1329 14 6 1.8513 -3.5810 0.5444 15 6 1.1649 -4.7709 0.4183 16 6 0.0364 -4.8424 -0.3777 17 6 -0.4144 -3.7165 -1.0556 18 7 -1.5588 -3.7951 -1.8616 19 6 -2.3676 -4.8707 -1.9927 20 6 -3.3538 -4.5414 -2.8588 21 6 -3.1420 -3.2210 -3.2707 22 6 -4.0038 -2.4478 -4.2354 23 9 -3.4175 -1.2034 -4.4902 24 9 -4.1203 -3.1623 -5.4325 25 9 -5.2735 -2.2599 -3.6790 26 7 -2.0668 -2.7730 -2.6740 27 6 0.2703 -2.5173 -0.9395 28 1 -0.3634 -0.9318 0.4336 29 1 -0.3634 0.8413 0.5901 30 1 -0.3633 0.0903 -1.0237 31 1 0.0266 3.0337 -1.5737 32 1 2.7325 -3.5291 1.1667 33 1 1.5099 -5.6495 0.9429 34 1 -0.4965 -5.7770 -0.4728 35 1 -2.2476 -5.8223 -1.4961 36 1 -4.1616 -5.1841 -3.1760 37 1 -0.0762 -1.6421 -1.4692 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000151538708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:05 Heat of formation + Delta-G solvation = -71.344228 kcal Electronic energy + Delta-G solvation = -28862.284981 eV Core-core repulsion = 24191.900562 eV Total energy + Delta-G solvation = -4670.384419 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.094 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -51.26914 -48.78647 -48.77813 -42.88912 -41.12274 -39.27602 -36.85809 -34.97982 -33.97173 -32.37885 -31.59349 -30.67277 -28.37126 -27.69139 -26.95580 -24.71761 -23.90574 -22.69649 -21.84657 -21.03501 -19.66228 -19.46353 -19.27640 -19.01240 -18.40333 -17.75092 -17.26506 -16.78608 -16.59165 -16.31281 -15.93702 -15.63312 -15.61305 -15.48511 -15.19165 -15.01260 -14.91214 -14.90405 -14.85504 -14.52758 -14.44521 -14.00340 -13.73270 -13.39793 -13.38482 -13.19721 -12.80630 -12.75073 -12.52353 -12.51010 -12.14507 -11.98219 -11.69800 -11.13458 -10.63987 -10.39003 -10.00039 -9.80864 -9.30983 -8.43162 -6.12574 -0.40625 -0.03588 0.74165 0.78490 1.28254 1.34482 1.36334 1.51831 1.66334 1.95184 2.20417 2.51381 2.68791 2.81035 2.92055 3.02941 3.25362 3.45094 3.71049 3.79504 3.93541 4.08301 4.17333 4.31264 4.39243 4.43827 4.48733 4.62970 4.80338 4.81796 4.99810 5.15100 5.19924 5.25667 5.34386 5.39593 5.58797 5.98451 6.00400 6.16725 6.34530 7.01630 7.28222 7.84979 8.58415 Molecular weight = 339.09amu Principal moments of inertia in cm(-1) A = 0.010124 B = 0.003991 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2765.022927 B = 7013.837722 C = 9455.763227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.128 3.872 2 N -0.446 5.446 3 C -0.350 4.350 4 H 0.078 0.922 5 C -0.002 4.002 6 N -0.893 5.893 7 Si 0.997 3.003 8 H -0.268 1.268 9 H -0.274 1.274 10 H -0.263 1.263 11 C 0.467 3.533 12 O -0.628 6.628 13 C -0.105 4.105 14 C -0.085 4.085 15 C -0.079 4.079 16 C -0.096 4.096 17 C 0.127 3.873 18 N -0.305 5.305 19 C 0.079 3.921 20 C -0.223 4.223 21 C -0.031 4.031 22 C 0.559 3.441 23 F -0.181 7.181 24 F -0.160 7.160 25 F -0.163 7.163 26 N -0.285 5.285 27 C -0.109 4.109 28 H 0.058 0.942 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.276 0.724 32 H 0.133 0.867 33 H 0.190 0.810 34 H 0.191 0.809 35 H 0.247 0.753 36 H 0.201 0.799 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.687 -19.817 -0.958 23.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.015 4.015 2 N -0.162 5.162 3 C -0.478 4.478 4 H 0.096 0.904 5 C -0.204 4.204 6 N -0.530 5.530 7 Si 0.820 3.180 8 H -0.193 1.193 9 H -0.199 1.199 10 H -0.188 1.188 11 C 0.257 3.743 12 O -0.517 6.517 13 C -0.108 4.108 14 C -0.105 4.105 15 C -0.097 4.097 16 C -0.117 4.117 17 C 0.036 3.964 18 N -0.082 5.082 19 C -0.063 4.063 20 C -0.251 4.251 21 C -0.197 4.197 22 C 0.502 3.498 23 F -0.163 7.163 24 F -0.142 7.142 25 F -0.145 7.145 26 N -0.108 5.108 27 C -0.130 4.130 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.151 0.849 33 H 0.207 0.793 34 H 0.208 0.792 35 H 0.263 0.737 36 H 0.218 0.782 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.485 -18.616 -0.849 21.890 hybrid contribution -0.216 1.324 -0.568 1.457 sum -11.701 -17.291 -1.416 20.926 Atomic orbital electron populations 1.21599 0.79742 0.99099 1.01091 1.43698 1.06522 1.04896 1.61070 1.19724 1.01477 0.86261 1.40356 0.90375 1.26301 0.96859 1.03455 0.93805 1.70047 1.19380 1.31322 1.32285 0.84829 0.78435 0.76388 0.78397 1.19266 1.19918 1.18771 1.18785 0.87096 0.84672 0.83714 1.90551 1.15473 1.87786 1.57860 1.19889 0.95745 0.94806 1.00408 1.21551 0.99733 0.91683 0.97491 1.21403 0.93268 0.97659 0.97370 1.21443 0.97555 0.96823 0.95855 1.17610 0.87046 0.95753 0.95969 1.45955 1.20057 1.09979 1.32189 1.23670 0.89482 0.94271 0.98839 1.21727 1.05189 0.93798 1.04408 1.22409 0.97387 0.97896 1.01994 1.16871 0.77738 0.76448 0.78718 1.93248 1.84158 1.44357 1.94500 1.93236 1.95994 1.77921 1.47029 1.93238 1.40818 1.95181 1.85217 1.77610 1.11900 1.12964 1.08286 1.21203 0.94715 0.97965 0.99140 0.92391 0.93343 0.93038 0.91410 0.84931 0.79276 0.79218 0.73663 0.78244 0.86419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 6.32 7.10 127.77 0.91 7.23 16 2 N -0.45 -24.90 3.00 -662.33 -1.99 -26.89 16 3 C -0.35 -20.91 9.24 84.10 0.78 -20.13 16 4 H 0.08 4.90 7.42 -2.91 -0.02 4.88 16 5 C 0.00 -0.08 5.15 84.96 0.44 0.35 16 6 N -0.89 -50.06 10.74 21.68 0.23 -49.83 16 7 Si 1.00 43.87 29.57 68.60 2.03 45.89 16 8 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 9 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 10 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 11 C 0.47 24.90 7.31 86.75 0.63 25.53 16 12 O -0.63 -37.57 16.53 -4.01 -0.07 -37.63 16 13 C -0.10 -4.24 5.15 -20.10 -0.10 -4.34 16 14 C -0.08 -2.56 9.61 22.55 0.22 -2.34 16 15 C -0.08 -1.42 10.02 22.21 0.22 -1.19 16 16 C -0.10 -1.60 9.45 22.45 0.21 -1.39 16 17 C 0.13 3.45 6.67 38.05 0.25 3.70 16 18 N -0.31 -7.86 3.80 -187.87 -0.71 -8.57 16 19 C 0.08 1.16 10.79 83.50 0.90 2.06 16 20 C -0.22 -3.73 10.73 22.00 0.24 -3.49 16 21 C -0.03 -0.80 6.51 43.11 0.28 -0.52 16 22 C 0.56 14.41 3.51 71.24 0.25 14.66 16 23 F -0.18 -5.81 17.14 44.97 0.77 -5.03 16 24 F -0.16 -3.67 17.30 44.97 0.78 -2.89 16 25 F -0.16 -3.91 17.30 44.97 0.78 -3.13 16 26 N -0.29 -9.41 11.65 -47.33 -0.55 -9.96 16 27 C -0.11 -4.11 7.21 22.66 0.16 -3.95 16 28 H 0.06 2.50 5.75 -2.38 -0.01 2.49 16 29 H 0.05 2.46 7.47 -2.39 -0.02 2.44 16 30 H 0.05 2.73 6.20 -2.39 -0.01 2.71 16 31 H 0.28 14.43 8.31 -92.71 -0.77 13.66 16 32 H 0.13 4.04 8.00 -2.91 -0.02 4.01 16 33 H 0.19 1.52 8.06 -2.91 -0.02 1.50 16 34 H 0.19 0.93 6.75 -2.91 -0.02 0.91 16 35 H 0.25 0.46 7.06 -2.91 -0.02 0.44 16 36 H 0.20 1.76 8.06 -2.91 -0.02 1.74 16 37 H 0.12 5.28 5.18 -2.91 -0.02 5.27 16 Total: -1.00 -81.86 335.06 7.81 -74.05 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: 1.16 Total: 7.82 kcal Atomic # 6 Polarization: 10.78 SS G_CDS: 5.39 Total: 16.17 kcal Atomic # 7 Polarization: -92.23 SS G_CDS: -3.02 Total: -95.25 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: -0.07 Total: -37.63 kcal Atomic # 9 Polarization: -13.38 SS G_CDS: 2.33 Total: -11.06 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -81.86 7.81 -74.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151538708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.707 kcal (2) G-P(sol) polarization free energy of solvation -81.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds