Wall clock time and date at job start Tue Mar 31 2020 22:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46809 * 2 1 4 4 C 1.50691 * 109.47250 * 120.00295 * 2 1 3 5 5 O 1.21287 * 120.00047 * 120.00188 * 4 2 1 6 6 N 1.34777 * 120.00577 * 300.00189 * 4 2 1 7 7 C 1.46499 * 120.00437 * 179.97438 * 6 4 2 8 8 C 1.50695 * 109.47162 * 179.97438 * 7 6 4 9 9 O 1.21305 * 119.99875 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00440 * 179.97438 * 8 7 6 11 11 C 1.37094 * 120.00424 * 179.97438 * 10 8 7 12 12 H 1.08000 * 120.00201 * 0.02562 * 11 10 8 13 13 C 1.38949 * 120.00112 * 180.02562 * 11 10 8 14 14 N 1.31407 * 119.99987 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00079 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46709 * 60.00192 * 15 13 11 17 17 H 1.48501 * 109.47044 * 180.02562 * 15 13 11 18 18 H 1.48492 * 109.47464 * 300.00408 * 15 13 11 19 19 C 1.50705 * 109.47042 * 240.00545 * 2 1 3 20 20 C 1.38214 * 120.01059 * 299.99749 * 19 2 1 21 21 C 1.38225 * 120.02588 * 179.97438 * 20 19 2 22 22 C 1.38275 * 120.05072 * 359.97438 * 21 20 19 23 23 N 1.47998 * 119.98601 * 180.02562 * 22 21 20 24 24 O 1.21801 * 120.00340 * 0.02562 * 23 22 21 25 25 O 1.21800 * 119.99899 * 179.97438 * 23 22 21 26 26 C 1.38172 * 120.02282 * 0.02562 * 22 21 20 27 27 C 1.38431 * 120.01288 * 119.97568 * 19 2 1 28 28 F 1.35101 * 120.02486 * 359.97438 * 27 19 2 29 29 H 1.08998 * 109.47333 * 59.99683 * 1 2 3 30 30 H 1.09005 * 109.46558 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46872 * 299.99111 * 1 2 3 32 32 H 0.97004 * 119.98966 * 359.97438 * 6 4 2 33 33 H 1.08992 * 109.46990 * 299.99751 * 7 6 4 34 34 H 1.09002 * 109.46559 * 60.00044 * 7 6 4 35 35 H 0.97000 * 119.99565 * 0.02562 * 10 8 7 36 36 H 0.97000 * 120.00145 * 179.97438 * 14 13 11 37 37 H 1.07999 * 119.99303 * 0.02562 * 20 19 2 38 38 H 1.07993 * 119.97788 * 179.72581 * 21 20 19 39 39 H 1.08005 * 120.01385 * 180.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 8 2.7297 -1.6965 1.1190 6 7 1.7068 -0.2501 2.4545 7 6 2.1948 -0.9412 3.6506 8 6 1.6931 -0.2305 4.8811 9 8 0.9968 0.7566 4.7699 10 7 2.0179 -0.6914 6.1052 11 6 1.5619 -0.0446 7.2246 12 1 0.9420 0.8342 7.1257 13 6 1.8974 -0.5196 8.4866 14 7 2.6521 -1.5885 8.6071 15 14 1.2766 0.3622 10.0119 16 1 -0.2084 0.3644 10.0124 17 1 1.7715 -0.3380 11.2243 18 1 1.7736 1.7615 10.0115 19 6 2.0324 -0.7103 -1.2306 20 6 1.6986 -2.0336 -1.4496 21 6 2.1588 -2.6852 -2.5784 22 6 2.9529 -2.0141 -3.4900 23 7 3.4443 -2.7131 -4.6985 24 8 3.1488 -3.8791 -4.8902 25 8 4.1434 -2.1220 -5.5019 26 6 3.2878 -0.6913 -3.2731 27 6 2.8278 -0.0376 -2.1422 28 9 3.1539 1.2561 -1.9295 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.1494 0.5387 2.5435 33 1 1.8310 -1.9686 3.6504 34 1 3.2848 -0.9415 3.6507 35 1 2.5750 -1.4805 6.1941 36 1 2.8865 -1.9199 9.4881 37 1 1.0774 -2.5584 -0.7390 38 1 1.9012 -3.7204 -2.7466 39 1 3.9077 -0.1671 -3.9855 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344123537.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:44 Heat of formation + Delta-G solvation = -99.524487 kcal Electronic energy + Delta-G solvation = -28059.350855 eV Core-core repulsion = 23498.831964 eV Total energy + Delta-G solvation = -4560.518891 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.60974 -42.52713 -40.64604 -39.28460 -38.23272 -36.90400 -34.91907 -34.66856 -33.85745 -31.54550 -31.48369 -31.00068 -27.88715 -27.03400 -25.04477 -24.24870 -23.69953 -22.40530 -20.23102 -19.95648 -19.70867 -19.10836 -18.27088 -17.88864 -17.62769 -17.05195 -16.96155 -16.60369 -16.23399 -15.71433 -15.46546 -15.32798 -14.77199 -14.61382 -14.27146 -14.11264 -13.93668 -13.58211 -13.45700 -13.16507 -12.80555 -12.67062 -12.34336 -12.20824 -12.00654 -11.89740 -11.72379 -11.67542 -11.49084 -11.46169 -11.17976 -10.58100 -10.40408 -10.06294 -9.92464 -9.72262 -9.56778 -9.04924 -8.76189 -8.20541 -6.60679 -4.03260 -0.64863 0.31597 0.87678 0.95760 2.46843 2.58385 3.06573 3.08049 3.15967 3.20374 3.39030 3.62127 3.72388 3.81875 4.02368 4.05360 4.25925 4.52428 4.58030 4.65511 4.71623 4.74176 5.01204 5.07435 5.15358 5.22248 5.25734 5.31309 5.53977 5.70025 5.72470 5.77559 5.79427 5.92885 6.03525 6.41850 7.28120 7.36886 7.50743 7.80943 8.12405 8.34070 8.94634 9.28140 9.75347 10.55837 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.027306 B = 0.001954 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.157713 B =14328.361018 C =14768.499360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.082 4.082 3 H 0.119 0.881 4 C 0.518 3.482 5 O -0.541 6.541 6 N -0.699 5.699 7 C 0.108 3.892 8 C 0.425 3.575 9 O -0.598 6.598 10 N -0.546 5.546 11 C -0.307 4.307 12 H 0.106 0.894 13 C 0.027 3.973 14 N -0.893 5.893 15 Si 0.935 3.065 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.272 1.272 19 C -0.042 4.042 20 C -0.055 4.055 21 C -0.062 4.062 22 C -0.020 4.020 23 N 0.029 4.971 24 O -0.152 6.152 25 O -0.157 6.157 26 C -0.095 4.095 27 C 0.113 3.887 28 F -0.118 7.118 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.413 0.587 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.396 0.604 36 H 0.276 0.724 37 H 0.158 0.842 38 H 0.161 0.839 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.381 0.137 -20.871 21.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.104 4.104 3 H 0.137 0.863 4 C 0.302 3.698 5 O -0.419 6.419 6 N -0.353 5.353 7 C -0.019 4.019 8 C 0.210 3.790 9 O -0.485 6.485 10 N -0.180 5.180 11 C -0.437 4.437 12 H 0.123 0.877 13 C -0.177 4.177 14 N -0.533 5.533 15 Si 0.761 3.239 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.197 1.197 19 C -0.043 4.043 20 C -0.074 4.074 21 C -0.081 4.081 22 C -0.103 4.103 23 N 0.550 4.450 24 O -0.369 6.369 25 O -0.373 6.373 26 C -0.114 4.114 27 C 0.092 3.908 28 F -0.097 7.097 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.251 0.749 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.230 0.770 36 H 0.086 0.914 37 H 0.175 0.825 38 H 0.179 0.821 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -2.487 0.378 -20.187 20.343 hybrid contribution 0.204 0.351 0.706 0.814 sum -2.283 0.729 -19.481 19.628 Atomic orbital electron populations 1.21858 0.90378 1.03777 1.04124 1.20378 0.99013 1.01208 0.89770 0.86320 1.20056 0.80742 0.84755 0.84231 1.90736 1.38108 1.26365 1.86718 1.45643 1.52857 1.32378 1.04385 1.20998 1.00042 0.96596 0.84266 1.19684 0.86947 0.87835 0.84500 1.90502 1.43289 1.28757 1.85997 1.41791 1.44807 1.27243 1.04185 1.19682 1.29969 1.11141 0.82889 0.87660 1.25347 0.96456 0.96320 0.99532 1.69599 1.35631 1.22388 1.25658 0.85855 0.79190 0.79202 0.79639 1.19716 1.20797 1.19727 1.19898 0.94989 0.94850 0.94613 1.20921 0.98373 0.92554 0.95530 1.21118 0.93546 1.01818 0.91641 1.20739 1.06138 0.93614 0.89842 1.43499 0.98915 1.00949 1.01644 1.94559 1.61064 1.00037 1.81231 1.94557 1.34243 1.68027 1.40516 1.20783 1.00034 0.92802 0.97813 1.16992 0.98847 0.80003 0.94928 1.91577 1.90815 1.32822 1.94449 0.90852 0.91254 0.90136 0.74862 0.89625 0.89706 0.77014 0.91421 0.82454 0.82099 0.81650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 8.90 37.16 0.33 -0.66 16 2 C -0.08 -0.74 2.88 -92.92 -0.27 -1.01 16 3 H 0.12 0.98 7.13 -51.93 -0.37 0.61 16 4 C 0.52 6.62 7.02 -10.99 -0.08 6.54 16 5 O -0.54 -8.42 15.11 5.55 0.08 -8.34 16 6 N -0.70 -9.88 5.42 -61.48 -0.33 -10.21 16 7 C 0.11 1.79 6.15 -5.20 -0.03 1.76 16 8 C 0.42 9.08 7.85 -10.99 -0.09 8.99 16 9 O -0.60 -14.33 15.24 5.54 0.08 -14.25 16 10 N -0.55 -12.88 5.29 -10.96 -0.06 -12.93 16 11 C -0.31 -8.03 9.68 -14.93 -0.14 -8.18 16 12 H 0.11 2.86 7.16 -52.49 -0.38 2.48 16 13 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 14 N -0.89 -23.10 13.05 55.50 0.72 -22.38 16 15 Si 0.93 19.88 29.55 -169.99 -5.02 14.85 16 16 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 17 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 18 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 19 C -0.04 -0.38 4.40 -104.56 -0.46 -0.84 16 20 C -0.06 -0.46 7.93 -39.59 -0.31 -0.77 16 21 C -0.06 -0.51 9.55 -39.57 -0.38 -0.89 16 22 C -0.02 -0.20 6.85 -79.97 -0.55 -0.74 16 23 N 0.03 0.33 4.45 33.95 0.15 0.48 16 24 O -0.15 -1.80 18.45 -29.46 -0.54 -2.35 16 25 O -0.16 -1.89 18.45 -29.46 -0.54 -2.43 16 26 C -0.09 -0.83 9.53 -39.51 -0.38 -1.21 16 27 C 0.11 1.02 7.25 -39.42 -0.29 0.74 16 28 F -0.12 -1.11 16.19 2.25 0.04 -1.08 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.44 7.39 -51.93 -0.38 0.06 16 31 H 0.08 0.57 7.56 -51.93 -0.39 0.17 16 32 H 0.41 5.68 6.86 -40.82 -0.28 5.40 16 33 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 34 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 35 H 0.40 8.99 7.90 -40.82 -0.32 8.66 16 36 H 0.28 6.77 8.31 -40.82 -0.34 6.43 16 37 H 0.16 1.14 7.52 -52.49 -0.39 0.74 16 38 H 0.16 1.06 7.61 -52.49 -0.40 0.66 16 39 H 0.17 1.23 7.61 -52.48 -0.40 0.83 16 LS Contribution 355.50 15.07 5.36 5.36 Total: -1.00 -30.75 355.50 -6.52 -37.27 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -3.72 Total: 11.69 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: -2.74 Total: 4.31 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: 0.48 Total: -45.03 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.92 Total: -27.36 kcal Atomic # 9 Polarization: -1.11 SS G_CDS: 0.04 Total: -1.08 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.75 -6.52 -37.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344123537.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.258 kcal (2) G-P(sol) polarization free energy of solvation -30.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds