Wall clock time and date at job start Tue Mar 31 2020 22:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46809 * 2 1 4 4 C 1.50691 * 109.47250 * 120.00295 * 2 1 3 5 5 O 1.21287 * 120.00047 * 120.00188 * 4 2 1 6 6 N 1.34777 * 120.00577 * 300.00189 * 4 2 1 7 7 C 1.46499 * 120.00437 * 179.97438 * 6 4 2 8 8 C 1.50695 * 109.47162 * 179.97438 * 7 6 4 9 9 O 1.21305 * 119.99875 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00440 * 179.97438 * 8 7 6 11 11 C 1.37094 * 120.00424 * 179.97438 * 10 8 7 12 12 H 1.08000 * 120.00201 * 0.02562 * 11 10 8 13 13 C 1.38949 * 120.00112 * 180.02562 * 11 10 8 14 14 N 1.31407 * 119.99987 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00079 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46709 * 60.00192 * 15 13 11 17 17 H 1.48501 * 109.47044 * 180.02562 * 15 13 11 18 18 H 1.48492 * 109.47464 * 300.00408 * 15 13 11 19 19 C 1.50705 * 109.47042 * 240.00545 * 2 1 3 20 20 C 1.38214 * 120.01059 * 299.99749 * 19 2 1 21 21 C 1.38225 * 120.02588 * 179.97438 * 20 19 2 22 22 C 1.38275 * 120.05072 * 359.97438 * 21 20 19 23 23 N 1.47998 * 119.98601 * 180.02562 * 22 21 20 24 24 O 1.21801 * 120.00340 * 0.02562 * 23 22 21 25 25 O 1.21800 * 119.99899 * 179.97438 * 23 22 21 26 26 C 1.38172 * 120.02282 * 0.02562 * 22 21 20 27 27 C 1.38431 * 120.01288 * 119.97568 * 19 2 1 28 28 F 1.35101 * 120.02486 * 359.97438 * 27 19 2 29 29 H 1.08998 * 109.47333 * 59.99683 * 1 2 3 30 30 H 1.09005 * 109.46558 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46872 * 299.99111 * 1 2 3 32 32 H 0.97004 * 119.98966 * 359.97438 * 6 4 2 33 33 H 1.08992 * 109.46990 * 299.99751 * 7 6 4 34 34 H 1.09002 * 109.46559 * 60.00044 * 7 6 4 35 35 H 0.97000 * 119.99565 * 0.02562 * 10 8 7 36 36 H 0.97000 * 120.00145 * 179.97438 * 14 13 11 37 37 H 1.07999 * 119.99303 * 0.02562 * 20 19 2 38 38 H 1.07993 * 119.97788 * 179.72581 * 21 20 19 39 39 H 1.08005 * 120.01385 * 180.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 8 2.7297 -1.6965 1.1190 6 7 1.7068 -0.2501 2.4545 7 6 2.1948 -0.9412 3.6506 8 6 1.6931 -0.2305 4.8811 9 8 0.9968 0.7566 4.7699 10 7 2.0179 -0.6914 6.1052 11 6 1.5619 -0.0446 7.2246 12 1 0.9420 0.8342 7.1257 13 6 1.8974 -0.5196 8.4866 14 7 2.6521 -1.5885 8.6071 15 14 1.2766 0.3622 10.0119 16 1 -0.2084 0.3644 10.0124 17 1 1.7715 -0.3380 11.2243 18 1 1.7736 1.7615 10.0115 19 6 2.0324 -0.7103 -1.2306 20 6 1.6986 -2.0336 -1.4496 21 6 2.1588 -2.6852 -2.5784 22 6 2.9529 -2.0141 -3.4900 23 7 3.4443 -2.7131 -4.6985 24 8 3.1488 -3.8791 -4.8902 25 8 4.1434 -2.1220 -5.5019 26 6 3.2878 -0.6913 -3.2731 27 6 2.8278 -0.0376 -2.1422 28 9 3.1539 1.2561 -1.9295 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.1494 0.5387 2.5435 33 1 1.8310 -1.9686 3.6504 34 1 3.2848 -0.9415 3.6507 35 1 2.5750 -1.4805 6.1941 36 1 2.8865 -1.9199 9.4881 37 1 1.0774 -2.5584 -0.7390 38 1 1.9012 -3.7204 -2.7466 39 1 3.9077 -0.1671 -3.9855 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344123537.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:43 Heat of formation + Delta-G solvation = -118.924377 kcal Electronic energy + Delta-G solvation = -28060.192097 eV Core-core repulsion = 23498.831964 eV Total energy + Delta-G solvation = -4561.360133 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.31948 -43.36395 -41.58357 -40.42339 -39.69017 -37.77788 -36.27997 -35.70807 -35.34612 -33.38388 -32.19930 -31.78609 -29.28586 -27.77768 -26.60871 -25.24421 -24.41296 -23.26864 -21.40661 -21.20565 -20.72837 -20.08535 -19.95069 -18.75330 -18.68829 -17.93099 -17.70780 -17.56638 -17.15248 -16.92502 -16.77599 -16.52276 -16.27465 -15.75330 -15.57751 -15.27087 -14.93363 -14.65840 -14.23388 -13.98128 -13.85233 -13.71307 -13.54461 -13.37603 -13.27901 -12.91331 -12.85328 -12.74095 -12.47656 -12.37732 -12.37157 -12.29506 -12.14783 -11.56573 -11.05635 -10.66031 -10.55811 -10.28941 -10.23748 -10.09505 -8.51873 -6.01983 -1.44648 -0.35042 0.06716 0.17221 1.37302 1.42808 1.45753 1.53103 1.78415 1.90583 2.10165 2.30957 2.68742 3.00258 3.09602 3.15320 3.15917 3.37121 3.55308 3.70243 3.88446 3.99952 4.03926 4.20012 4.34418 4.42263 4.43287 4.51581 4.58776 4.67336 4.77499 4.91615 4.99826 5.17608 5.21289 5.28307 5.37609 5.90719 6.37779 6.39825 6.48460 7.02477 7.04929 7.43745 7.93474 8.64541 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.027306 B = 0.001954 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.157713 B =14328.361018 C =14768.499360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.074 4.074 3 H 0.129 0.871 4 C 0.521 3.479 5 O -0.568 6.568 6 N -0.701 5.701 7 C 0.121 3.879 8 C 0.432 3.568 9 O -0.623 6.623 10 N -0.560 5.560 11 C -0.337 4.337 12 H 0.087 0.913 13 C -0.011 4.011 14 N -0.916 5.916 15 Si 0.996 3.004 16 H -0.269 1.269 17 H -0.274 1.274 18 H -0.270 1.270 19 C -0.045 4.045 20 C -0.055 4.055 21 C -0.054 4.054 22 C -0.031 4.031 23 N 0.031 4.969 24 O -0.162 6.162 25 O -0.176 6.176 26 C -0.092 4.092 27 C 0.108 3.892 28 F -0.121 7.121 29 H 0.092 0.908 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.416 0.584 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.399 0.601 36 H 0.280 0.720 37 H 0.170 0.830 38 H 0.178 0.822 39 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.036 0.294 -21.180 21.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.095 4.095 3 H 0.147 0.853 4 C 0.308 3.692 5 O -0.447 6.447 6 N -0.355 5.355 7 C -0.006 4.006 8 C 0.219 3.781 9 O -0.511 6.511 10 N -0.195 5.195 11 C -0.466 4.466 12 H 0.105 0.895 13 C -0.212 4.212 14 N -0.556 5.556 15 Si 0.819 3.181 16 H -0.194 1.194 17 H -0.198 1.198 18 H -0.196 1.196 19 C -0.047 4.047 20 C -0.074 4.074 21 C -0.073 4.073 22 C -0.114 4.114 23 N 0.548 4.452 24 O -0.378 6.378 25 O -0.389 6.389 26 C -0.111 4.111 27 C 0.088 3.912 28 F -0.099 7.099 29 H 0.111 0.889 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.255 0.745 33 H 0.117 0.883 34 H 0.110 0.890 35 H 0.233 0.767 36 H 0.089 0.911 37 H 0.188 0.812 38 H 0.195 0.805 39 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -3.132 0.537 -20.539 20.783 hybrid contribution 0.397 0.312 0.737 0.894 sum -2.735 0.849 -19.802 20.008 Atomic orbital electron populations 1.21905 0.88468 1.04545 1.05054 1.20367 1.00467 1.01029 0.87623 0.85295 1.20626 0.79788 0.84304 0.84520 1.90728 1.39239 1.27674 1.87073 1.45650 1.53187 1.32476 1.04174 1.20788 1.00312 0.96655 0.82874 1.20451 0.85334 0.87103 0.85228 1.90482 1.44069 1.29915 1.86674 1.41854 1.45567 1.27605 1.04508 1.19689 1.31036 1.11469 0.84401 0.89473 1.26115 0.96368 0.96903 1.01786 1.69665 1.36252 1.23231 1.26433 0.84944 0.78673 0.78109 0.76392 1.19397 1.19821 1.19558 1.19996 0.94939 0.95218 0.94517 1.21082 0.98353 0.92320 0.95618 1.21327 0.92498 1.02499 0.90980 1.20835 1.07084 0.93976 0.89486 1.43724 0.98606 1.00872 1.01995 1.94545 1.61224 1.00491 1.81579 1.94549 1.34958 1.68045 1.41326 1.20886 0.99770 0.92591 0.97882 1.16993 0.99087 0.79984 0.95118 1.91573 1.90895 1.32979 1.94472 0.88877 0.90630 0.90280 0.74538 0.88290 0.88956 0.76728 0.91096 0.81230 0.80500 0.80682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 8.90 71.98 0.64 -0.94 16 2 C -0.07 -1.17 2.88 -12.29 -0.04 -1.20 16 3 H 0.13 1.82 7.13 -2.39 -0.02 1.80 16 4 C 0.52 12.34 7.02 87.65 0.62 12.96 16 5 O -0.57 -16.65 15.11 -3.05 -0.05 -16.69 16 6 N -0.70 -18.74 5.42 -466.81 -2.53 -21.27 16 7 C 0.12 3.87 6.15 85.63 0.53 4.40 16 8 C 0.43 18.35 7.85 87.66 0.69 19.04 16 9 O -0.62 -29.81 15.24 -3.11 -0.05 -29.86 16 10 N -0.56 -26.61 5.29 -306.98 -1.62 -28.23 16 11 C -0.34 -17.79 9.68 84.04 0.81 -16.98 16 12 H 0.09 4.83 7.16 -2.91 -0.02 4.81 16 13 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 14 N -0.92 -47.26 13.05 21.66 0.28 -46.98 16 15 Si 1.00 40.42 29.55 68.60 2.03 42.45 16 16 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 17 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 18 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 19 C -0.05 -0.72 4.40 -19.82 -0.09 -0.81 16 20 C -0.06 -0.79 7.93 22.26 0.18 -0.62 16 21 C -0.05 -0.78 9.55 22.28 0.21 -0.57 16 22 C -0.03 -0.55 6.85 36.37 0.25 -0.30 16 23 N 0.03 0.67 4.45 -46.49 -0.21 0.46 16 24 O -0.16 -3.72 18.45 18.88 0.35 -3.38 16 25 O -0.18 -4.15 18.45 18.89 0.35 -3.80 16 26 C -0.09 -1.48 9.53 22.31 0.21 -1.27 16 27 C 0.11 1.78 7.25 22.38 0.16 1.94 16 28 F -0.12 -2.07 16.19 44.97 0.73 -1.34 16 29 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.07 0.76 7.39 -2.38 -0.02 0.74 16 31 H 0.08 0.93 7.56 -2.39 -0.02 0.92 16 32 H 0.42 10.88 6.86 -92.71 -0.64 10.25 16 33 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 34 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 35 H 0.40 18.23 7.90 -92.71 -0.73 17.50 16 36 H 0.28 13.58 8.31 -92.71 -0.77 12.81 16 37 H 0.17 2.02 7.52 -2.91 -0.02 2.00 16 38 H 0.18 1.95 7.61 -2.91 -0.02 1.92 16 39 H 0.18 2.40 7.61 -2.91 -0.02 2.38 16 Total: -1.00 -65.26 355.50 3.71 -61.55 By element: Atomic # 1 Polarization: 31.76 SS G_CDS: -0.22 Total: 31.54 kcal Atomic # 6 Polarization: 10.92 SS G_CDS: 4.64 Total: 15.57 kcal Atomic # 7 Polarization: -91.95 SS G_CDS: -4.08 Total: -96.03 kcal Atomic # 8 Polarization: -54.34 SS G_CDS: 0.60 Total: -53.73 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.73 Total: -1.34 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.45 kcal Total: -65.26 3.71 -61.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344123537.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.375 kcal (2) G-P(sol) polarization free energy of solvation -65.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds