Wall clock time and date at job start Tue Mar 31 2020 22:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 O 1.21283 * 120.00262 * 240.00295 * 4 2 1 6 6 N 1.34777 * 119.99928 * 59.72201 * 4 2 1 7 7 C 1.46499 * 120.00199 * 180.27479 * 6 4 2 8 8 C 1.50694 * 109.47550 * 180.02562 * 7 6 4 9 9 O 1.21297 * 119.99707 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00262 * 180.02562 * 8 7 6 11 11 C 1.37096 * 119.99935 * 180.02562 * 10 8 7 12 12 H 1.07998 * 120.00186 * 0.02562 * 11 10 8 13 13 C 1.38957 * 119.99926 * 179.97438 * 11 10 8 14 14 N 1.31413 * 119.99843 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 119.99989 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.47072 * 89.99363 * 15 13 11 17 17 H 1.48498 * 109.47116 * 209.99800 * 15 13 11 18 18 H 1.48503 * 109.46936 * 329.99329 * 15 13 11 19 19 C 1.50700 * 109.47313 * 120.00230 * 2 1 3 20 20 C 1.38218 * 120.01168 * 59.71710 * 19 2 1 21 21 C 1.38221 * 120.02516 * 179.74678 * 20 19 2 22 22 C 1.38274 * 120.04987 * 0.56135 * 21 20 19 23 23 N 1.48004 * 119.98759 * 179.72316 * 22 21 20 24 24 O 1.21798 * 120.00063 * 179.97438 * 23 22 21 25 25 O 1.21807 * 119.99917 * 359.97089 * 23 22 21 26 26 C 1.38176 * 120.02393 * 359.69589 * 22 21 20 27 27 C 1.38437 * 120.01418 * 240.00194 * 19 2 1 28 28 F 1.35102 * 120.02298 * 359.95136 * 27 19 2 29 29 H 1.08996 * 109.46783 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 31 31 H 1.09001 * 109.46739 * 59.99706 * 1 2 3 32 32 H 0.97000 * 120.00317 * 0.28382 * 6 4 2 33 33 H 1.08998 * 109.47134 * 300.00670 * 7 6 4 34 34 H 1.09002 * 109.46857 * 59.99862 * 7 6 4 35 35 H 0.96996 * 120.00282 * 0.02562 * 10 8 7 36 36 H 0.97003 * 119.99567 * 179.97438 * 14 13 11 37 37 H 1.07994 * 119.98948 * 0.03493 * 20 19 2 38 38 H 1.08003 * 119.97827 * 180.25378 * 21 20 19 39 39 H 1.08002 * 120.01174 * 180.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1193 6 7 1.7022 -0.2532 -2.4546 7 6 2.1855 -0.9472 -3.6507 8 6 1.6792 -0.2397 -4.8812 9 8 0.9834 0.7476 -4.7699 10 7 1.9995 -0.7039 -6.1053 11 6 1.5393 -0.0599 -7.2246 12 1 0.9204 0.8197 -7.1256 13 6 1.8700 -0.5381 -8.4867 14 7 1.4284 0.0789 -9.5596 15 14 2.9409 -2.0590 -8.6581 16 1 2.0804 -3.2685 -8.6975 17 1 3.7287 -1.9707 -9.9138 18 1 3.8652 -2.1467 -7.4991 19 6 2.0324 -0.7104 1.2304 20 6 1.6938 -2.0320 1.4523 21 6 2.1588 -2.6855 2.5781 22 6 2.9534 -2.0146 3.4894 23 7 3.4454 -2.7139 4.6975 24 8 4.1458 -2.1234 5.5002 25 8 3.1499 -3.8799 4.8891 26 6 3.2887 -0.6919 3.2723 27 6 2.8283 -0.0380 2.1419 28 9 3.1559 1.2552 1.9284 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.1446 0.5355 -2.5436 33 1 3.2755 -0.9477 -3.6550 34 1 1.8218 -1.9748 -3.6465 35 1 2.5556 -1.4936 -6.1943 36 1 1.6596 -0.2548 -10.4406 37 1 1.0696 -2.5557 0.7435 38 1 1.8971 -3.7193 2.7486 39 1 3.9097 -0.1682 3.9841 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344123539.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:47 Heat of formation + Delta-G solvation = -92.212230 kcal Electronic energy + Delta-G solvation = -28124.945034 eV Core-core repulsion = 23564.743226 eV Total energy + Delta-G solvation = -4560.201808 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.64489 -42.55882 -40.71124 -39.37361 -38.41175 -36.93544 -34.97272 -34.75973 -33.94361 -31.91927 -31.56088 -31.06363 -28.09354 -27.07162 -25.04778 -24.18882 -23.72230 -22.42436 -20.31337 -19.99256 -19.75664 -19.14592 -18.79999 -17.92035 -17.64678 -17.08849 -16.99846 -16.66690 -16.26623 -15.83262 -15.56201 -15.35283 -14.94921 -14.80925 -14.33270 -14.12366 -13.96140 -13.51140 -13.29522 -13.18875 -12.87187 -12.73015 -12.60899 -12.31494 -12.29663 -12.08692 -11.92906 -11.73345 -11.52620 -11.49258 -11.32564 -10.73263 -10.16956 -10.12580 -9.97346 -9.80495 -9.61087 -9.15507 -8.91031 -8.41253 -6.50428 -4.03578 -0.68541 0.27716 0.83976 0.92338 2.38887 2.53715 2.91059 2.95799 3.00529 3.06168 3.35071 3.42919 3.67768 3.77750 3.94471 4.00916 4.21579 4.37764 4.48278 4.52830 4.61441 4.68114 4.96629 5.03835 5.11517 5.17931 5.21835 5.27606 5.47560 5.53179 5.61384 5.63533 5.66818 5.73289 5.99922 6.28448 7.24791 7.31879 7.43166 7.88155 8.04086 8.33699 8.71172 9.18880 9.50861 10.61425 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.022665 B = 0.002096 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.110915 B =13358.621224 C =13983.653196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.082 4.082 3 H 0.120 0.880 4 C 0.519 3.481 5 O -0.541 6.541 6 N -0.700 5.700 7 C 0.106 3.894 8 C 0.435 3.565 9 O -0.580 6.580 10 N -0.573 5.573 11 C -0.312 4.312 12 H 0.122 0.878 13 C 0.046 3.954 14 N -0.871 5.871 15 Si 0.880 3.120 16 H -0.268 1.268 17 H -0.274 1.274 18 H -0.267 1.267 19 C -0.042 4.042 20 C -0.056 4.056 21 C -0.062 4.062 22 C -0.020 4.020 23 N 0.029 4.971 24 O -0.157 6.157 25 O -0.152 6.152 26 C -0.094 4.094 27 C 0.113 3.887 28 F -0.118 7.118 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.414 0.586 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.375 0.625 36 H 0.277 0.723 37 H 0.158 0.842 38 H 0.161 0.839 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.386 -3.650 23.498 23.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.103 4.103 3 H 0.138 0.862 4 C 0.304 3.696 5 O -0.419 6.419 6 N -0.354 5.354 7 C -0.022 4.022 8 C 0.221 3.779 9 O -0.464 6.464 10 N -0.211 5.211 11 C -0.441 4.441 12 H 0.140 0.860 13 C -0.159 4.159 14 N -0.510 5.510 15 Si 0.705 3.295 16 H -0.193 1.193 17 H -0.199 1.199 18 H -0.193 1.193 19 C -0.044 4.044 20 C -0.074 4.074 21 C -0.081 4.081 22 C -0.103 4.103 23 N 0.550 4.450 24 O -0.373 6.373 25 O -0.369 6.369 26 C -0.114 4.114 27 C 0.093 3.907 28 F -0.096 7.096 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.253 0.747 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.208 0.792 36 H 0.087 0.913 37 H 0.175 0.825 38 H 0.179 0.821 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 0.176 -3.270 22.750 22.984 hybrid contribution 0.955 -0.688 -0.224 1.198 sum 1.132 -3.958 22.526 22.899 Atomic orbital electron populations 1.21861 0.90301 1.03797 1.04216 1.20376 0.99060 1.01233 0.89681 0.86250 1.20072 0.80642 0.84709 0.84214 1.90733 1.38124 1.26333 1.86733 1.45629 1.52963 1.32466 1.04303 1.21022 1.00166 0.96645 0.84366 1.19572 0.86606 0.87681 0.84068 1.90545 1.42131 1.28043 1.85710 1.42124 1.46108 1.27109 1.05713 1.19438 1.30503 1.12215 0.81897 0.86023 1.25085 0.97569 0.98159 0.95066 1.69616 1.43666 1.39554 0.98116 0.86668 0.80784 0.83109 0.78904 1.19334 1.19882 1.19267 1.19893 0.95012 0.94860 0.94615 1.20916 0.98364 0.92559 0.95602 1.21116 0.93518 1.01807 0.91671 1.20744 1.06139 0.93596 0.89834 1.43502 0.98928 1.00954 1.01643 1.94559 1.34136 1.68053 1.40545 1.94561 1.61105 1.00021 1.81201 1.20788 1.00006 0.92794 0.97820 1.16991 0.98829 0.80020 0.94909 1.91580 1.90773 1.32856 1.94427 0.91247 0.90783 0.90092 0.74712 0.89578 0.89486 0.79224 0.91270 0.82474 0.82099 0.81627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 8.90 37.16 0.33 -0.60 16 2 C -0.08 -0.70 2.89 -92.92 -0.27 -0.97 16 3 H 0.12 0.92 7.13 -51.93 -0.37 0.55 16 4 C 0.52 6.24 7.03 -10.98 -0.08 6.16 16 5 O -0.54 -7.95 15.13 5.55 0.08 -7.87 16 6 N -0.70 -9.29 5.42 -61.47 -0.33 -9.63 16 7 C 0.11 1.61 6.15 -5.20 -0.03 1.58 16 8 C 0.43 8.84 7.85 -10.99 -0.09 8.75 16 9 O -0.58 -13.64 15.24 5.54 0.08 -13.56 16 10 N -0.57 -12.59 5.09 -10.96 -0.06 -12.65 16 11 C -0.31 -8.26 10.16 -14.93 -0.15 -8.41 16 12 H 0.12 3.68 7.39 -52.49 -0.39 3.29 16 13 C 0.05 1.19 5.50 -17.46 -0.10 1.09 16 14 N -0.87 -24.14 13.96 55.50 0.77 -23.36 16 15 Si 0.88 18.28 27.74 -169.99 -4.71 13.57 16 16 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 17 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 18 H -0.27 -5.06 6.52 56.52 0.37 -4.70 16 19 C -0.04 -0.36 4.40 -104.56 -0.46 -0.82 16 20 C -0.06 -0.44 7.94 -39.60 -0.31 -0.75 16 21 C -0.06 -0.48 9.55 -39.57 -0.38 -0.86 16 22 C -0.02 -0.19 6.85 -79.96 -0.55 -0.73 16 23 N 0.03 0.32 4.45 33.96 0.15 0.47 16 24 O -0.16 -1.84 18.45 -29.46 -0.54 -2.38 16 25 O -0.15 -1.76 18.45 -29.46 -0.54 -2.30 16 26 C -0.09 -0.79 9.53 -39.52 -0.38 -1.17 16 27 C 0.11 0.98 7.25 -39.42 -0.29 0.69 16 28 F -0.12 -1.07 16.19 2.25 0.04 -1.03 16 29 H 0.07 0.41 7.38 -51.93 -0.38 0.03 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.54 7.55 -51.93 -0.39 0.14 16 32 H 0.41 5.40 6.85 -40.82 -0.28 5.12 16 33 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.37 7.23 5.76 -40.82 -0.24 7.00 16 36 H 0.28 7.07 8.31 -40.82 -0.34 6.73 16 37 H 0.16 1.05 7.52 -52.49 -0.39 0.65 16 38 H 0.16 0.99 7.61 -52.48 -0.40 0.59 16 39 H 0.17 1.17 7.61 -52.49 -0.40 0.77 16 LS Contribution 352.37 15.07 5.31 5.31 Total: -1.00 -31.93 352.37 -6.17 -38.10 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -3.68 Total: 11.35 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: -2.74 Total: 3.98 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: 0.54 Total: -45.17 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -0.92 Total: -26.10 kcal Atomic # 9 Polarization: -1.07 SS G_CDS: 0.04 Total: -1.03 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -4.71 Total: 13.57 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.93 -6.17 -38.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344123539.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.110 kcal (2) G-P(sol) polarization free energy of solvation -31.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds