Wall clock time and date at job start Tue Mar 31 2020 22:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 O 1.21283 * 120.00262 * 240.00295 * 4 2 1 6 6 N 1.34777 * 119.99928 * 59.72201 * 4 2 1 7 7 C 1.46499 * 120.00199 * 180.27479 * 6 4 2 8 8 C 1.50694 * 109.47550 * 180.02562 * 7 6 4 9 9 O 1.21297 * 119.99707 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00262 * 180.02562 * 8 7 6 11 11 C 1.37096 * 119.99935 * 180.02562 * 10 8 7 12 12 H 1.07998 * 120.00186 * 0.02562 * 11 10 8 13 13 C 1.38957 * 119.99926 * 179.97438 * 11 10 8 14 14 N 1.31413 * 119.99843 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 119.99989 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.47072 * 89.99363 * 15 13 11 17 17 H 1.48498 * 109.47116 * 209.99800 * 15 13 11 18 18 H 1.48503 * 109.46936 * 329.99329 * 15 13 11 19 19 C 1.50700 * 109.47313 * 120.00230 * 2 1 3 20 20 C 1.38218 * 120.01168 * 59.71710 * 19 2 1 21 21 C 1.38221 * 120.02516 * 179.74678 * 20 19 2 22 22 C 1.38274 * 120.04987 * 0.56135 * 21 20 19 23 23 N 1.48004 * 119.98759 * 179.72316 * 22 21 20 24 24 O 1.21798 * 120.00063 * 179.97438 * 23 22 21 25 25 O 1.21807 * 119.99917 * 359.97089 * 23 22 21 26 26 C 1.38176 * 120.02393 * 359.69589 * 22 21 20 27 27 C 1.38437 * 120.01418 * 240.00194 * 19 2 1 28 28 F 1.35102 * 120.02298 * 359.95136 * 27 19 2 29 29 H 1.08996 * 109.46783 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 31 31 H 1.09001 * 109.46739 * 59.99706 * 1 2 3 32 32 H 0.97000 * 120.00317 * 0.28382 * 6 4 2 33 33 H 1.08998 * 109.47134 * 300.00670 * 7 6 4 34 34 H 1.09002 * 109.46857 * 59.99862 * 7 6 4 35 35 H 0.96996 * 120.00282 * 0.02562 * 10 8 7 36 36 H 0.97003 * 119.99567 * 179.97438 * 14 13 11 37 37 H 1.07994 * 119.98948 * 0.03493 * 20 19 2 38 38 H 1.08003 * 119.97827 * 180.25378 * 21 20 19 39 39 H 1.08002 * 120.01174 * 180.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1193 6 7 1.7022 -0.2532 -2.4546 7 6 2.1855 -0.9472 -3.6507 8 6 1.6792 -0.2397 -4.8812 9 8 0.9834 0.7476 -4.7699 10 7 1.9995 -0.7039 -6.1053 11 6 1.5393 -0.0599 -7.2246 12 1 0.9204 0.8197 -7.1256 13 6 1.8700 -0.5381 -8.4867 14 7 1.4284 0.0789 -9.5596 15 14 2.9409 -2.0590 -8.6581 16 1 2.0804 -3.2685 -8.6975 17 1 3.7287 -1.9707 -9.9138 18 1 3.8652 -2.1467 -7.4991 19 6 2.0324 -0.7104 1.2304 20 6 1.6938 -2.0320 1.4523 21 6 2.1588 -2.6855 2.5781 22 6 2.9534 -2.0146 3.4894 23 7 3.4454 -2.7139 4.6975 24 8 4.1458 -2.1234 5.5002 25 8 3.1499 -3.8799 4.8891 26 6 3.2887 -0.6919 3.2723 27 6 2.8283 -0.0380 2.1419 28 9 3.1559 1.2552 1.9284 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.1446 0.5355 -2.5436 33 1 3.2755 -0.9477 -3.6550 34 1 1.8218 -1.9748 -3.6465 35 1 2.5556 -1.4936 -6.1943 36 1 1.6596 -0.2548 -10.4406 37 1 1.0696 -2.5557 0.7435 38 1 1.8971 -3.7193 2.7486 39 1 3.9097 -0.1682 3.9841 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344123539.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:46 Heat of formation + Delta-G solvation = -113.801952 kcal Electronic energy + Delta-G solvation = -28125.881234 eV Core-core repulsion = 23564.743226 eV Total energy + Delta-G solvation = -4561.138008 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.31764 -43.36016 -41.59650 -40.51709 -39.74667 -37.77568 -36.32194 -35.70683 -35.38195 -33.84125 -32.19789 -31.79699 -29.43210 -27.77692 -26.50085 -25.20148 -24.40334 -23.24464 -21.49027 -21.24076 -20.73121 -20.51154 -19.94799 -18.73943 -18.66534 -17.93844 -17.71550 -17.59509 -17.16069 -16.97410 -16.80442 -16.61481 -16.34086 -15.72957 -15.35923 -15.28309 -14.85266 -14.65835 -14.32453 -14.24301 -14.02788 -13.84787 -13.74269 -13.38530 -13.28328 -12.97808 -12.85709 -12.73975 -12.45591 -12.37246 -12.37060 -12.29477 -12.01811 -11.58655 -11.05788 -10.68979 -10.62338 -10.35043 -10.28048 -10.21759 -8.46363 -6.08380 -1.44543 -0.34711 0.06831 0.17588 1.30115 1.33060 1.43032 1.45193 1.77319 1.79121 2.10189 2.19593 2.68855 2.85427 3.00867 3.10038 3.14733 3.37330 3.55367 3.69258 3.88601 3.99292 4.00212 4.04516 4.33805 4.40196 4.41250 4.51947 4.59048 4.67584 4.77486 4.91836 5.00042 5.16369 5.20774 5.28556 5.47164 5.87643 6.37656 6.39465 6.47606 6.77877 7.02945 7.28745 7.77231 8.69893 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.022665 B = 0.002096 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.110915 B =13358.621224 C =13983.653196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.075 4.075 3 H 0.128 0.872 4 C 0.523 3.477 5 O -0.565 6.565 6 N -0.704 5.704 7 C 0.118 3.882 8 C 0.444 3.556 9 O -0.614 6.614 10 N -0.579 5.579 11 C -0.330 4.330 12 H 0.064 0.936 13 C -0.009 4.009 14 N -0.926 5.926 15 Si 0.958 3.042 16 H -0.256 1.256 17 H -0.276 1.276 18 H -0.232 1.232 19 C -0.044 4.044 20 C -0.055 4.055 21 C -0.054 4.054 22 C -0.031 4.031 23 N 0.030 4.970 24 O -0.177 6.177 25 O -0.161 6.161 26 C -0.092 4.092 27 C 0.108 3.892 28 F -0.121 7.121 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.415 0.585 33 H 0.102 0.898 34 H 0.110 0.890 35 H 0.392 0.608 36 H 0.281 0.719 37 H 0.172 0.828 38 H 0.178 0.822 39 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.166 -5.577 24.816 25.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.096 4.096 3 H 0.146 0.854 4 C 0.310 3.690 5 O -0.444 6.444 6 N -0.358 5.358 7 C -0.010 4.010 8 C 0.232 3.768 9 O -0.500 6.500 10 N -0.219 5.219 11 C -0.459 4.459 12 H 0.082 0.918 13 C -0.209 4.209 14 N -0.565 5.565 15 Si 0.779 3.221 16 H -0.180 1.180 17 H -0.201 1.201 18 H -0.156 1.156 19 C -0.046 4.046 20 C -0.073 4.073 21 C -0.073 4.073 22 C -0.114 4.114 23 N 0.548 4.452 24 O -0.390 6.390 25 O -0.378 6.378 26 C -0.112 4.112 27 C 0.088 3.912 28 F -0.100 7.100 29 H 0.095 0.905 30 H 0.110 0.890 31 H 0.096 0.904 32 H 0.254 0.746 33 H 0.120 0.880 34 H 0.128 0.872 35 H 0.228 0.772 36 H 0.090 0.910 37 H 0.189 0.811 38 H 0.195 0.805 39 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 0.968 -5.187 24.129 24.699 hybrid contribution 0.620 0.025 -0.572 0.844 sum 1.588 -5.162 23.557 24.168 Atomic orbital electron populations 1.21904 0.88549 1.04585 1.04987 1.20368 1.00393 1.01064 0.87772 0.85393 1.20554 0.79756 0.84283 0.84414 1.90726 1.39142 1.27491 1.87039 1.45673 1.53296 1.32574 1.04255 1.20906 1.00904 0.96920 0.82270 1.20542 0.84537 0.86701 0.85066 1.90537 1.43183 1.29671 1.86571 1.41944 1.47071 1.27816 1.05022 1.19017 1.31128 1.11579 0.84199 0.91774 1.26078 0.98896 1.02040 0.93923 1.69783 1.45702 1.42086 0.98962 0.85449 0.78976 0.77820 0.79894 1.18029 1.20084 1.15562 1.19994 0.94883 0.95237 0.94495 1.21090 0.98288 0.92273 0.95672 1.21336 0.92426 1.02502 0.90999 1.20841 1.07135 0.93947 0.89470 1.43739 0.98605 1.00874 1.02011 1.94552 1.34942 1.68086 1.41416 1.94545 1.61216 1.00483 1.81544 1.20883 0.99787 0.92612 0.97901 1.17003 0.99133 0.79977 0.95124 1.91574 1.90869 1.33077 1.94455 0.90496 0.89026 0.90359 0.74582 0.87977 0.87204 0.77248 0.90959 0.81063 0.80458 0.80778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 8.90 71.98 0.64 -0.81 16 2 C -0.07 -1.08 2.89 -12.29 -0.04 -1.12 16 3 H 0.13 1.67 7.13 -2.38 -0.02 1.65 16 4 C 0.52 11.19 7.03 87.66 0.62 11.81 16 5 O -0.56 -14.91 15.13 -3.04 -0.05 -14.95 16 6 N -0.70 -17.10 5.42 -466.79 -2.53 -19.63 16 7 C 0.12 3.27 6.15 85.63 0.53 3.80 16 8 C 0.44 17.64 7.85 87.66 0.69 18.33 16 9 O -0.61 -29.22 15.24 -3.08 -0.05 -29.26 16 10 N -0.58 -24.93 5.09 -306.98 -1.56 -26.50 16 11 C -0.33 -17.98 10.16 84.04 0.85 -17.13 16 12 H 0.06 4.15 7.39 -2.91 -0.02 4.13 16 13 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16 14 N -0.93 -53.05 13.96 21.67 0.30 -52.74 16 15 Si 0.96 36.61 27.74 68.60 1.90 38.51 16 16 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 17 H -0.28 -10.59 7.11 99.48 0.71 -9.88 16 18 H -0.23 -7.47 6.52 99.48 0.65 -6.82 16 19 C -0.04 -0.65 4.40 -19.82 -0.09 -0.74 16 20 C -0.05 -0.70 7.94 22.26 0.18 -0.53 16 21 C -0.05 -0.71 9.55 22.27 0.21 -0.50 16 22 C -0.03 -0.52 6.85 36.37 0.25 -0.27 16 23 N 0.03 0.64 4.45 -46.49 -0.21 0.43 16 24 O -0.18 -4.07 18.45 18.89 0.35 -3.72 16 25 O -0.16 -3.57 18.45 18.88 0.35 -3.22 16 26 C -0.09 -1.41 9.53 22.31 0.21 -1.19 16 27 C 0.11 1.66 7.25 22.37 0.16 1.82 16 28 F -0.12 -1.98 16.19 44.97 0.73 -1.26 16 29 H 0.08 0.68 7.38 -2.39 -0.02 0.66 16 30 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.08 0.87 7.55 -2.39 -0.02 0.85 16 32 H 0.42 10.19 6.85 -92.71 -0.63 9.56 16 33 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 35 H 0.39 14.05 5.76 -92.71 -0.53 13.51 16 36 H 0.28 14.73 8.31 -92.71 -0.77 13.96 16 37 H 0.17 1.72 7.52 -2.91 -0.02 1.69 16 38 H 0.18 1.71 7.61 -2.91 -0.02 1.69 16 39 H 0.17 2.27 7.61 -2.91 -0.02 2.25 16 Total: -1.00 -72.21 352.37 3.85 -68.36 By element: Atomic # 1 Polarization: 30.58 SS G_CDS: -0.08 Total: 30.51 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: 4.68 Total: 13.46 kcal Atomic # 7 Polarization: -94.44 SS G_CDS: -4.00 Total: -98.43 kcal Atomic # 8 Polarization: -51.76 SS G_CDS: 0.60 Total: -51.16 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.73 Total: -1.26 kcal Atomic # 14 Polarization: 36.61 SS G_CDS: 1.90 Total: 38.51 kcal Total: -72.21 3.85 -68.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344123539.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.438 kcal (2) G-P(sol) polarization free energy of solvation -72.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds