Wall clock time and date at job start Tue Mar 31 2020 23:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42901 * 114.00171 * 2 1 4 4 C 1.53003 * 109.47306 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46850 * 65.00043 * 4 3 2 6 6 C 1.37099 * 119.99914 * 264.06545 * 5 4 3 7 7 H 1.08001 * 119.99888 * 135.73665 * 6 5 4 8 8 C 1.38942 * 120.00356 * 315.73624 * 6 5 4 9 9 N 1.31410 * 120.00072 * 1.82706 * 8 6 5 10 10 Si 1.86806 * 120.00024 * 181.82769 * 8 6 5 11 11 H 1.48494 * 109.46911 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.46915 * 120.00141 * 10 8 6 13 13 H 1.48499 * 109.46737 * 239.99814 * 10 8 6 14 14 C 1.34781 * 119.99844 * 84.07287 * 5 4 3 15 15 O 1.21285 * 119.99781 * 355.82169 * 14 5 4 16 16 C 1.50702 * 119.99742 * 176.09923 * 14 5 4 17 17 H 1.08995 * 109.43433 * 335.42536 * 16 14 5 18 18 C 1.53077 * 109.43078 * 95.33336 * 16 14 5 19 19 C 1.53400 * 108.31033 * 168.25368 * 18 16 14 20 20 O 1.42824 * 108.31539 * 295.18266 * 19 18 16 21 21 C 1.35878 * 117.84435 * 49.24411 * 20 19 18 22 22 C 1.39141 * 118.47320 * 162.92601 * 21 20 19 23 23 C 1.37961 * 120.23205 * 179.74764 * 22 21 20 24 24 C 1.38391 * 119.94527 * 0.02562 * 23 22 21 25 25 Cl 1.73597 * 120.02655 * 180.02562 * 24 23 22 26 26 C 1.38213 * 119.95259 * 0.07158 * 24 23 22 27 27 C 1.38363 * 121.80472 * 342.82141 * 21 20 19 28 28 H 1.09009 * 109.47228 * 59.99723 * 1 2 3 29 29 H 1.09000 * 109.47721 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47491 * 299.99891 * 1 2 3 31 31 H 1.09003 * 109.47010 * 60.00104 * 3 2 1 32 32 H 1.08997 * 109.47323 * 300.00102 * 3 2 1 33 33 H 1.09002 * 109.47113 * 305.00219 * 4 3 2 34 34 H 1.08997 * 109.47093 * 185.00590 * 4 3 2 35 35 H 0.96998 * 120.00125 * 180.02562 * 9 8 6 36 36 H 1.08993 * 109.70141 * 287.92056 * 18 16 14 37 37 H 1.08997 * 109.69648 * 48.52209 * 18 16 14 38 38 H 1.09002 * 109.68193 * 175.49275 * 19 18 16 39 39 H 1.09002 * 109.73324 * 54.89740 * 19 18 16 40 40 H 1.08002 * 119.88697 * 359.76381 * 22 21 20 41 41 H 1.08000 * 120.02806 * 179.97438 * 23 22 21 42 42 H 1.07992 * 119.84233 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.2150 -0.7852 -1.3001 7 1 3.8524 -1.3676 -2.1342 8 6 4.9233 -1.4034 -0.2770 9 7 5.3335 -0.7015 0.7554 10 14 5.2923 -3.2323 -0.3691 11 1 4.7252 -3.7891 -1.6234 12 1 6.7623 -3.4420 -0.3539 13 1 4.6823 -3.9196 0.7974 14 6 4.1482 1.3194 -2.3538 15 8 3.8652 2.4985 -2.3313 16 6 4.6858 0.6974 -3.6169 17 1 5.2688 -0.1884 -3.3652 18 6 3.5195 0.2987 -4.5246 19 6 4.0832 -0.0526 -5.9073 20 8 4.6533 1.1286 -6.4728 21 6 5.5082 1.8518 -5.7032 22 6 6.3406 2.7767 -6.3259 23 6 7.2189 3.5342 -5.5788 24 6 7.2736 3.3743 -4.2053 25 17 8.3775 4.3269 -3.2631 26 6 6.4494 2.4550 -3.5842 27 6 5.5664 1.6918 -4.3301 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8508 0.5685 0.8427 34 1 3.9784 2.1765 0.0903 35 1 5.8283 -1.1330 1.4695 36 1 3.0079 -0.5680 -4.1061 37 1 2.8213 1.1310 -4.6127 38 1 3.2810 -0.4167 -6.5492 39 1 4.8513 -0.8196 -5.8077 40 1 6.2989 2.9022 -7.3978 41 1 7.8638 4.2508 -6.0656 42 1 6.4932 2.3320 -2.5122 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457201321.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:45 Heat of formation + Delta-G solvation = -95.116061 kcal Electronic energy + Delta-G solvation = -28346.748945 eV Core-core repulsion = 24318.297936 eV Total energy + Delta-G solvation = -4028.451009 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.107 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.67308 -38.59112 -37.53556 -36.96821 -35.89676 -34.78956 -33.69016 -31.61054 -30.38613 -29.91915 -29.22140 -26.16265 -25.66434 -24.62399 -23.50275 -22.69372 -21.76115 -19.92205 -19.06350 -17.74147 -17.06697 -16.55979 -16.30070 -15.87872 -15.43900 -15.29742 -14.95363 -14.49003 -14.44423 -14.20603 -13.96747 -13.69107 -13.41872 -13.14316 -13.05741 -12.71623 -12.54914 -12.20249 -11.92483 -11.71785 -11.66703 -11.28767 -11.11526 -11.04241 -10.97479 -10.91104 -10.74451 -10.53868 -10.42600 -10.33881 -10.14500 -10.05970 -9.11174 -8.97494 -8.65834 -8.40854 -7.81299 -7.50337 -6.32346 -4.18401 1.45928 1.54736 2.45566 3.09792 3.19500 3.21686 3.44922 3.73834 3.84999 4.08082 4.50373 4.67227 4.89957 4.95386 4.99051 5.10091 5.23918 5.35271 5.43079 5.49090 5.66315 5.69528 5.71289 5.78102 5.90552 5.97617 6.03336 6.09788 6.14855 6.19157 6.24964 6.38234 6.39597 6.49877 6.54301 6.69938 6.75039 6.86500 7.29735 7.53347 7.58562 7.82289 8.02479 8.35840 9.05527 9.44579 9.86668 10.65016 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.010442 B = 0.004388 C = 0.004215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2680.829983 B = 6378.933686 C = 6641.329903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.052 3.948 4 C 0.107 3.893 5 N -0.428 5.428 6 C -0.320 4.320 7 H 0.085 0.915 8 C 0.049 3.951 9 N -0.869 5.869 10 Si 0.917 3.083 11 H -0.268 1.268 12 H -0.281 1.281 13 H -0.280 1.280 14 C 0.481 3.519 15 O -0.597 6.597 16 C -0.056 4.056 17 H 0.115 0.885 18 C -0.144 4.144 19 C 0.063 3.937 20 O -0.317 6.317 21 C 0.136 3.864 22 C -0.146 4.146 23 C -0.086 4.086 24 C -0.068 4.068 25 Cl -0.081 7.081 26 C -0.045 4.045 27 C -0.111 4.111 28 H 0.030 0.970 29 H 0.077 0.923 30 H 0.029 0.971 31 H 0.037 0.963 32 H 0.039 0.961 33 H 0.132 0.868 34 H 0.063 0.937 35 H 0.270 0.730 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.107 0.893 39 H 0.067 0.933 40 H 0.135 0.865 41 H 0.134 0.866 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.683 1.395 -8.538 8.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C -0.026 4.026 4 C -0.016 4.016 5 N -0.145 5.145 6 C -0.448 4.448 7 H 0.103 0.897 8 C -0.156 4.156 9 N -0.506 5.506 10 Si 0.744 3.256 11 H -0.192 1.192 12 H -0.206 1.206 13 H -0.206 1.206 14 C 0.269 3.731 15 O -0.483 6.483 16 C -0.077 4.077 17 H 0.133 0.867 18 C -0.182 4.182 19 C -0.012 4.012 20 O -0.231 6.231 21 C 0.090 3.910 22 C -0.165 4.165 23 C -0.104 4.104 24 C -0.094 4.094 25 Cl -0.052 7.052 26 C -0.064 4.064 27 C -0.112 4.112 28 H 0.049 0.951 29 H 0.095 0.905 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.150 0.850 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.110 0.890 37 H 0.096 0.904 38 H 0.125 0.875 39 H 0.086 0.914 40 H 0.153 0.847 41 H 0.151 0.849 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.580 1.870 -8.400 8.625 hybrid contribution -0.111 -0.742 0.539 0.924 sum -0.691 1.128 -7.861 7.971 Atomic orbital electron populations 1.22633 0.83583 1.01623 0.98785 1.88125 1.17212 1.27903 1.95030 1.23046 0.96947 0.84109 0.98461 1.21755 0.88788 0.99090 0.92010 1.43321 1.56495 1.07274 1.07393 1.19328 1.33612 0.82653 1.09244 0.89733 1.25466 0.94781 0.99819 0.95562 1.69593 1.35896 1.36302 1.08829 0.86014 0.78176 0.82754 0.78642 1.19237 1.20641 1.20578 1.20041 0.81556 0.85988 0.85521 1.90557 1.56204 1.16454 1.85062 1.20031 0.95765 0.98114 0.93831 0.86720 1.22104 0.98045 1.03458 0.94569 1.23023 0.97933 0.85121 0.95082 1.85938 1.57934 1.37754 1.41511 1.18686 0.90378 0.92964 0.88923 1.20361 0.97157 0.98791 1.00168 1.20668 0.98838 0.99457 0.91483 1.20656 0.97960 0.98950 0.91870 1.98335 1.62226 1.71461 1.73203 1.20845 0.92287 0.92529 1.00712 1.19506 0.99255 1.00661 0.91795 0.95139 0.90483 0.95196 0.94518 0.94280 0.85038 0.91849 0.91967 0.89008 0.90424 0.87496 0.91436 0.84748 0.84862 0.84669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.36 -7.68 10.46 -35.23 -0.37 -8.05 16 3 C 0.05 1.09 6.24 37.16 0.23 1.32 16 4 C 0.11 2.52 5.21 -4.04 -0.02 2.50 16 5 N -0.43 -10.24 2.50 -114.81 -0.29 -10.53 16 6 C -0.32 -7.68 7.68 -14.94 -0.11 -7.79 16 7 H 0.09 1.94 7.09 -52.49 -0.37 1.57 16 8 C 0.05 1.18 5.34 -17.47 -0.09 1.09 16 9 N -0.87 -22.04 10.78 55.50 0.60 -21.44 16 10 Si 0.92 18.99 29.55 -169.99 -5.02 13.96 16 11 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 12 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 13 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 14 C 0.48 11.11 5.53 -10.98 -0.06 11.05 16 15 O -0.60 -15.15 15.46 5.55 0.09 -15.06 16 16 C -0.06 -1.10 2.06 -92.85 -0.19 -1.29 16 17 H 0.12 2.27 6.81 -51.93 -0.35 1.92 16 18 C -0.14 -2.35 5.48 -26.48 -0.15 -2.50 16 19 C 0.06 0.85 7.03 37.36 0.26 1.11 16 20 O -0.32 -4.93 10.27 -19.36 -0.20 -5.13 16 21 C 0.14 2.28 6.47 -39.20 -0.25 2.03 16 22 C -0.15 -2.13 9.93 -39.35 -0.39 -2.52 16 23 C -0.09 -1.23 9.83 -39.63 -0.39 -1.62 16 24 C -0.07 -1.14 6.32 -39.53 -0.25 -1.39 16 25 Cl -0.08 -1.26 28.96 -51.86 -1.50 -2.76 16 26 C -0.04 -0.87 8.37 -39.49 -0.33 -1.20 16 27 C -0.11 -2.08 5.11 -104.45 -0.53 -2.62 16 28 H 0.03 0.45 8.14 -51.92 -0.42 0.03 16 29 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.04 0.85 8.02 -51.93 -0.42 0.43 16 33 H 0.13 3.33 5.25 -51.93 -0.27 3.06 16 34 H 0.06 1.51 7.67 -51.93 -0.40 1.12 16 35 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 36 H 0.09 1.43 7.72 -51.93 -0.40 1.03 16 37 H 0.08 1.37 8.10 -51.93 -0.42 0.95 16 38 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 41 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16 42 H 0.14 2.88 7.34 -52.49 -0.39 2.50 16 LS Contribution 362.19 15.07 5.46 5.46 Total: -1.00 -28.65 362.19 -7.94 -36.60 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -5.54 Total: 7.19 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -1.17 Total: -0.23 kcal Atomic # 7 Polarization: -32.28 SS G_CDS: 0.31 Total: -31.97 kcal Atomic # 8 Polarization: -27.76 SS G_CDS: -0.48 Total: -28.24 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.02 Total: 13.96 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -1.50 Total: -2.76 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -28.65 -7.94 -36.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457201321.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.521 kcal (2) G-P(sol) polarization free energy of solvation -28.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds