Wall clock time and date at job start Tue Mar 31 2020 22:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 5 5 H 1.08003 * 120.00271 * 240.00086 * 4 2 1 6 6 C 1.37879 * 120.00161 * 59.99586 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46680 * 60.00301 * 8 6 4 10 10 H 1.48492 * 109.47298 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46944 * 300.00817 * 8 6 4 12 12 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 13 13 C 1.46499 * 120.00401 * 59.99673 * 12 2 1 14 14 S 1.65600 * 119.99854 * 239.99896 * 12 2 1 15 15 O 1.42101 * 106.40246 * 203.53898 * 14 12 2 16 16 O 1.42103 * 106.40034 * 336.45770 * 14 12 2 17 17 N 1.65601 * 107.21882 * 89.99628 * 14 12 2 18 18 C 1.46503 * 119.99776 * 65.00378 * 17 14 12 19 19 C 1.50698 * 109.47080 * 165.00203 * 18 17 14 20 20 N 1.29906 * 124.85855 * 89.69198 * 19 18 17 21 21 C 1.36065 * 108.79933 * 179.89638 * 20 19 18 22 22 C 1.39585 * 133.80257 * 180.10291 * 21 20 19 23 23 C 1.37684 * 119.72862 * 180.26446 * 22 21 20 24 24 C 1.38722 * 120.41969 * 0.04026 * 23 22 21 25 25 C 1.37911 * 120.48086 * 359.95575 * 24 23 22 26 26 C 1.38675 * 119.87137 * 0.02562 * 25 24 23 27 27 O 1.34235 * 124.85288 * 269.99685 * 19 18 17 28 28 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 29 29 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 30 30 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 31 31 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 32 32 H 1.08993 * 109.47066 * 89.99858 * 13 12 2 33 33 H 1.09004 * 109.47229 * 210.00249 * 13 12 2 34 34 H 1.09000 * 109.47083 * 330.00074 * 13 12 2 35 35 H 0.97000 * 120.00256 * 245.00310 * 17 14 12 36 36 H 1.09001 * 109.47031 * 284.99750 * 18 17 14 37 37 H 1.08991 * 109.47340 * 44.99621 * 18 17 14 38 38 H 1.07990 * 120.13562 * 0.30347 * 22 21 20 39 39 H 1.07999 * 119.79269 * 180.02562 * 23 22 21 40 40 H 1.08009 * 119.76304 * 179.97438 * 24 23 22 41 41 H 1.07994 * 120.06576 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 1.8278 -2.5198 -4.0082 10 1 1.8277 -0.4193 -5.2205 11 1 3.8074 -1.1190 -4.0078 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0932 1.4280 14 16 2.9705 0.1141 2.2862 15 8 3.7120 -0.8790 2.9814 16 8 3.5795 1.1829 1.5747 17 7 1.9609 0.8090 3.3997 18 6 1.1511 -0.0353 4.2817 19 6 0.6170 0.7948 5.4204 20 7 -0.5108 1.4393 5.4041 21 6 -0.6700 2.0745 6.5968 22 6 -1.6677 2.8920 7.1305 23 6 -1.5274 3.3982 8.4032 24 6 -0.4013 3.1014 9.1570 25 6 0.5922 2.2951 8.6426 26 6 0.4673 1.7763 7.3626 27 8 1.2413 0.9787 6.5944 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 0.7093 1.1618 -3.4844 32 1 2.4157 -2.7377 0.9716 33 1 1.6239 -2.2853 2.5002 34 1 0.6905 -2.3003 0.9847 35 1 1.9055 1.7750 3.4681 36 1 0.3190 -0.4567 3.7178 37 1 1.7671 -0.8424 4.6781 38 1 -2.5462 3.1260 6.5477 39 1 -2.2989 4.0305 8.8173 40 1 -0.3020 3.5045 10.1541 41 1 1.4659 2.0680 9.2354 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820720121.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:05 Heat of formation + Delta-G solvation = -26.698044 kcal Electronic energy + Delta-G solvation = -27170.153131 eV Core-core repulsion = 23179.005408 eV Total energy + Delta-G solvation = -3991.147723 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.52609 -38.36544 -36.80738 -36.24342 -35.74775 -35.33299 -34.65643 -32.60013 -31.00744 -30.24263 -29.12059 -26.96571 -25.62987 -25.13602 -23.47955 -22.64063 -21.84708 -20.84588 -19.08896 -18.38951 -17.71758 -17.41580 -17.04698 -16.93247 -16.54910 -15.95228 -15.53732 -15.06525 -14.55788 -14.43923 -14.23905 -14.06946 -13.55643 -13.43589 -13.17905 -12.83625 -12.79270 -12.58144 -12.11247 -11.89514 -11.83788 -11.80289 -11.59258 -11.52464 -11.37320 -11.26980 -10.97850 -10.80667 -10.73495 -10.51826 -10.28335 -10.05540 -9.65213 -9.26642 -9.16025 -8.81646 -8.45506 -8.03335 -6.07074 -4.13963 0.28664 0.87930 1.04826 2.09352 2.16888 3.28499 3.30782 3.35372 3.37271 3.39964 3.44360 3.99958 4.17951 4.40213 4.46380 4.68495 4.73509 4.80682 4.85998 5.01596 5.05042 5.20045 5.24478 5.46092 5.50901 5.64778 5.70623 5.87327 5.95383 5.97147 6.08297 6.27656 6.31540 6.59482 6.76256 6.78061 6.90827 7.02231 7.32945 7.43066 7.62149 7.78401 8.03941 8.26805 8.87873 9.51851 10.98553 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.022701 B = 0.002743 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.150900 B =10205.476382 C =10842.449067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.268 3.732 3 H 0.060 0.940 4 C -0.521 4.521 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.276 1.276 12 N -0.987 5.987 13 C 0.106 3.894 14 S 2.780 3.220 15 O -0.990 6.990 16 O -0.964 6.964 17 N -1.131 6.131 18 C 0.216 3.784 19 C 0.247 3.753 20 N -0.458 5.458 21 C 0.019 3.981 22 C -0.057 4.057 23 C -0.122 4.122 24 C -0.093 4.093 25 C -0.093 4.093 26 C 0.010 3.990 27 O -0.207 6.207 28 H 0.013 0.987 29 H 0.093 0.907 30 H 0.034 0.966 31 H 0.264 0.736 32 H 0.052 0.948 33 H 0.048 0.952 34 H 0.075 0.925 35 H 0.418 0.582 36 H 0.115 0.885 37 H 0.110 0.890 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.567 1.947 21.986 22.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.165 3.835 3 H 0.077 0.923 4 C -0.561 4.561 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.831 5.831 13 C -0.041 4.041 14 S 2.788 3.212 15 O -0.974 6.974 16 O -0.948 6.948 17 N -0.890 5.890 18 C 0.088 3.912 19 C 0.034 3.966 20 N -0.188 5.188 21 C -0.093 4.093 22 C -0.076 4.076 23 C -0.142 4.142 24 C -0.111 4.111 25 C -0.112 4.112 26 C -0.041 4.041 27 O -0.097 6.097 28 H 0.032 0.968 29 H 0.111 0.889 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.093 0.907 35 H 0.251 0.749 36 H 0.133 0.867 37 H 0.128 0.872 38 H 0.156 0.844 39 H 0.156 0.844 40 H 0.158 0.842 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.083 1.919 21.335 22.016 hybrid contribution 0.266 -0.034 -0.307 0.408 sum -4.816 1.885 21.028 21.654 Atomic orbital electron populations 1.22131 0.98109 0.99788 1.00862 1.18771 0.91392 0.93008 0.80316 0.92264 1.21282 1.31733 1.13059 0.89985 0.91943 1.24907 0.94951 0.95004 0.99006 1.69849 1.36443 1.22627 1.23922 0.86548 0.79336 0.79560 0.81894 1.20232 1.21247 1.20175 1.57713 1.69991 1.19791 1.35570 1.21218 1.02108 0.82020 0.98721 1.02056 0.73512 0.73266 0.72343 1.93553 1.68767 1.60501 1.74550 1.93638 1.73825 1.55992 1.71370 1.56442 1.62147 1.17798 1.52587 1.19650 0.96887 0.90269 0.84391 1.26345 0.87572 0.96697 0.85971 1.70717 1.16775 1.10766 1.20535 1.19968 0.96721 1.01899 0.90700 1.20382 0.97282 0.94775 0.95159 1.21070 0.98576 1.00735 0.93781 1.21044 0.92924 0.96931 1.00212 1.19920 1.01220 0.99177 0.90909 1.20415 0.91845 0.96678 0.95150 1.84550 1.44816 1.55673 1.24695 0.96781 0.88860 0.94694 0.92620 0.92950 0.93357 0.90674 0.74915 0.86725 0.87172 0.84426 0.84446 0.84177 0.84598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 8.95 37.16 0.33 -2.97 16 2 C 0.27 6.38 2.62 -69.08 -0.18 6.20 16 3 H 0.06 1.57 6.91 -51.93 -0.36 1.22 16 4 C -0.52 -13.78 8.37 -34.44 -0.29 -14.07 16 5 H 0.06 1.64 7.65 -52.48 -0.40 1.23 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.61 11.32 55.43 0.63 -23.99 16 8 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 9 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 N -0.99 -19.43 3.12 -115.85 -0.36 -19.79 16 13 C 0.11 1.74 9.53 59.85 0.57 2.31 16 14 S 2.78 51.91 6.09 -107.50 -0.66 51.25 16 15 O -0.99 -19.29 16.68 -57.17 -0.95 -20.24 16 16 O -0.96 -21.87 16.70 -57.17 -0.95 -22.82 16 17 N -1.13 -16.47 6.05 -11.66 -0.07 -16.54 16 18 C 0.22 2.65 6.87 -5.19 -0.04 2.61 16 19 C 0.25 3.29 7.63 -13.09 -0.10 3.19 16 20 N -0.46 -6.53 11.34 -8.70 -0.10 -6.63 16 21 C 0.02 0.24 7.24 -84.71 -0.61 -0.37 16 22 C -0.06 -0.55 10.10 -39.28 -0.40 -0.95 16 23 C -0.12 -0.86 10.02 -39.61 -0.40 -1.26 16 24 C -0.09 -0.62 10.03 -39.52 -0.40 -1.02 16 25 C -0.09 -0.82 10.06 -39.54 -0.40 -1.22 16 26 C 0.01 0.12 7.43 -38.64 -0.29 -0.17 16 27 O -0.21 -2.75 10.77 3.62 0.04 -2.71 16 28 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 30 H 0.03 0.72 6.66 -51.93 -0.35 0.37 16 31 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.05 0.62 7.79 -51.93 -0.40 0.22 16 34 H 0.07 1.19 6.43 -51.93 -0.33 0.86 16 35 H 0.42 5.75 8.64 -34.47 -0.30 5.45 16 36 H 0.12 1.25 8.14 -51.93 -0.42 0.82 16 37 H 0.11 1.17 7.75 -51.93 -0.40 0.77 16 38 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 40 H 0.14 0.50 8.06 -52.48 -0.42 0.07 16 41 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 359.94 15.07 5.42 5.42 Total: -1.00 -33.87 359.94 -9.26 -43.13 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -4.95 Total: 3.06 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -2.28 Total: -6.11 kcal Atomic # 7 Polarization: -67.05 SS G_CDS: 0.10 Total: -66.96 kcal Atomic # 8 Polarization: -43.90 SS G_CDS: -1.87 Total: -45.77 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 51.91 SS G_CDS: -0.66 Total: 51.25 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.87 -9.26 -43.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820720121.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.437 kcal (2) G-P(sol) polarization free energy of solvation -33.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds