Wall clock time and date at job start Tue Mar 31 2020 23:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36007 * 116.99832 * 2 1 4 4 C 1.38680 * 119.98766 * 359.72221 * 3 2 1 5 5 C 1.38090 * 120.04519 * 180.28490 * 4 3 2 6 6 C 1.38929 * 120.01867 * 359.97438 * 5 4 3 7 7 N 1.39857 * 120.01356 * 180.02562 * 6 5 4 8 8 C 1.34781 * 119.99852 * 213.34154 * 7 6 5 9 9 O 1.21380 * 119.99936 * 5.27642 * 8 7 6 10 10 C 1.49334 * 119.99760 * 185.27284 * 8 7 6 11 11 O 1.21360 * 120.00315 * 0.02562 * 10 8 7 12 12 N 1.34773 * 119.99545 * 179.97438 * 10 8 7 13 13 C 1.46508 * 119.99828 * 180.02562 * 12 10 8 14 14 C 1.50696 * 109.47029 * 179.97438 * 13 12 10 15 15 O 1.21288 * 120.00211 * 0.02562 * 14 13 12 16 16 N 1.34779 * 119.99561 * 179.97438 * 14 13 12 17 17 C 1.37101 * 119.99663 * 179.97438 * 16 14 13 18 18 H 1.08004 * 120.00301 * 0.02562 * 17 16 14 19 19 C 1.38950 * 119.99801 * 180.02562 * 17 16 14 20 20 N 1.31412 * 120.00206 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99911 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47148 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47096 * 119.99614 * 21 19 17 24 24 H 1.48499 * 109.46921 * 239.99950 * 21 19 17 25 25 C 1.38904 * 119.97337 * 0.02562 * 6 5 4 26 26 C 1.38243 * 119.95633 * 359.97438 * 25 6 5 27 27 F 1.35096 * 120.00819 * 179.97438 * 26 25 6 28 28 H 1.09001 * 109.47366 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47309 * 300.00107 * 1 2 3 30 30 H 1.09000 * 109.47261 * 60.00443 * 1 2 3 31 31 H 1.07994 * 119.97544 * 0.25627 * 4 3 2 32 32 H 1.07998 * 119.99481 * 179.97438 * 5 4 3 33 33 H 0.97004 * 120.00154 * 33.34200 * 7 6 5 34 34 H 0.96998 * 120.00592 * 359.97438 * 12 10 8 35 35 H 1.09008 * 109.46582 * 299.99984 * 13 12 10 36 36 H 1.08999 * 109.47243 * 59.99540 * 13 12 10 37 37 H 0.96995 * 120.00515 * 0.02562 * 16 14 13 38 38 H 0.97004 * 119.99961 * 180.02562 * 20 19 17 39 39 H 1.07996 * 120.02137 * 180.02562 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2908 2.3747 -0.0058 5 6 1.9165 3.6057 -0.0118 6 6 3.3038 3.6803 -0.0114 7 7 3.9373 4.9272 -0.0169 8 6 5.1123 5.0832 -0.6586 9 8 5.5733 4.1696 -1.3113 10 6 5.8468 6.3801 -0.5664 11 8 5.3861 7.2934 0.0866 12 7 7.0219 6.5359 -1.2077 13 6 7.7429 7.8081 -1.1168 14 6 9.0172 7.7215 -1.9166 15 8 9.2956 6.6980 -2.5049 16 7 9.8470 8.7817 -1.9789 17 6 11.0066 8.7027 -2.7060 18 1 11.2549 7.7911 -3.2293 19 6 11.8624 9.7956 -2.7698 20 7 11.5601 10.9049 -2.1336 21 14 13.4421 9.6882 -3.7612 22 1 13.5488 8.3417 -4.3781 23 1 13.4286 10.7219 -4.8272 24 1 14.6047 9.9155 -2.8658 25 6 4.0613 2.5161 -0.0056 26 6 3.4339 1.2842 0.0004 27 9 4.1696 0.1512 0.0055 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.2124 2.3175 -0.0062 32 1 1.3273 4.5108 -0.0167 33 1 3.5311 5.6796 0.4411 34 1 7.3908 5.8056 -1.7287 35 1 7.1183 8.6087 -1.5133 36 1 7.9822 8.0165 -0.0741 37 1 9.6242 9.6003 -1.5087 38 1 12.1573 11.6680 -2.1784 39 1 5.1398 2.5731 -0.0048 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117415708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:51 Heat of formation + Delta-G solvation = -149.447315 kcal Electronic energy + Delta-G solvation = -27511.801996 eV Core-core repulsion = 22949.118289 eV Total energy + Delta-G solvation = -4562.683707 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.02693 -41.28375 -40.23513 -39.16338 -38.18752 -37.63642 -35.17503 -34.39677 -33.75416 -31.44774 -31.19569 -29.88100 -28.38453 -27.65683 -25.28417 -24.12521 -23.38026 -22.20288 -20.47649 -19.85146 -19.07258 -18.70679 -18.19084 -17.87145 -17.17294 -16.73878 -16.49171 -16.08429 -15.96568 -15.44183 -15.38798 -15.34695 -15.18752 -14.88032 -14.58634 -14.51139 -14.12899 -13.76942 -13.59161 -13.45192 -13.07678 -12.80943 -12.42837 -12.32452 -12.10300 -11.91288 -11.81474 -11.67267 -11.55587 -11.17483 -10.43404 -10.39984 -10.35866 -9.81208 -9.69738 -9.27926 -9.15290 -8.71929 -8.21449 -8.15626 -6.56361 -3.98379 0.60117 0.70714 1.36831 2.07167 2.72586 2.95724 3.07666 3.20892 3.23523 3.27427 3.40631 3.66156 3.87506 4.06520 4.22858 4.34902 4.48437 4.63582 4.68360 4.72430 4.74173 5.00426 5.02366 5.11513 5.24014 5.48340 5.62100 5.66573 5.67708 5.77040 5.86570 5.92888 6.25856 6.29821 6.69579 6.83919 7.26540 7.42451 7.57006 7.84000 7.96074 8.38806 8.99860 9.32437 9.80025 10.60346 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.030564 B = 0.001772 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.877285 B =15793.831772 C =16524.105375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.310 6.310 3 C 0.081 3.919 4 C -0.161 4.161 5 C -0.109 4.109 6 C 0.141 3.859 7 N -0.645 5.645 8 C 0.510 3.490 9 O -0.490 6.490 10 C 0.507 3.493 11 O -0.527 6.527 12 N -0.668 5.668 13 C 0.106 3.894 14 C 0.425 3.575 15 O -0.592 6.592 16 N -0.546 5.546 17 C -0.305 4.305 18 H 0.107 0.893 19 C 0.027 3.973 20 N -0.893 5.893 21 Si 0.933 3.067 22 H -0.267 1.267 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.119 4.119 26 C 0.094 3.906 27 F -0.127 7.127 28 H 0.102 0.898 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.144 0.856 32 H 0.140 0.860 33 H 0.426 0.574 34 H 0.424 0.576 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.396 0.604 38 H 0.274 0.726 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.846 -13.344 7.390 28.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.223 6.223 3 C 0.034 3.966 4 C -0.180 4.180 5 C -0.130 4.130 6 C 0.047 3.953 7 N -0.293 5.293 8 C 0.292 3.708 9 O -0.362 6.362 10 C 0.287 3.713 11 O -0.405 6.405 12 N -0.323 5.323 13 C -0.021 4.021 14 C 0.210 3.790 15 O -0.478 6.478 16 N -0.181 5.181 17 C -0.435 4.435 18 H 0.125 0.875 19 C -0.176 4.176 20 N -0.534 5.534 21 Si 0.760 3.240 22 H -0.191 1.191 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.140 4.140 26 C 0.073 3.927 27 F -0.105 7.105 28 H 0.121 0.879 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.162 0.838 32 H 0.158 0.842 33 H 0.265 0.735 34 H 0.265 0.735 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.230 0.770 38 H 0.084 0.916 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -23.323 -14.019 6.975 28.092 hybrid contribution 0.513 0.626 -0.187 0.831 sum -22.809 -13.394 6.788 27.308 Atomic orbital electron populations 1.23129 0.77902 1.04372 1.01517 1.86161 1.21711 1.25599 1.88827 1.18996 0.90709 0.85775 1.01116 1.20900 1.00327 0.90660 1.06158 1.20769 0.92085 0.98368 1.01771 1.17262 0.91081 0.84492 1.02510 1.43085 1.21840 1.11376 1.53041 1.20428 0.81707 0.89149 0.79492 1.90835 1.65903 1.41927 1.37518 1.19609 0.82626 0.87594 0.81515 1.90772 1.67361 1.41526 1.40797 1.45517 1.19897 1.17717 1.49205 1.21156 0.93640 0.85400 1.01948 1.19622 0.86293 0.85771 0.87336 1.90543 1.76125 1.30759 1.50394 1.41777 1.19117 1.12981 1.44223 1.19807 0.96261 1.00872 1.26529 0.87499 1.25335 0.99949 0.94759 0.97602 1.69618 1.38432 1.03328 1.41980 0.85743 0.80524 0.78695 0.79065 1.19072 1.20579 1.20579 1.21001 1.02217 0.89074 1.01739 1.16655 0.85758 0.82730 1.07542 1.91527 1.76542 1.48404 1.94044 0.87925 0.92374 0.92350 0.83840 0.84200 0.73529 0.73499 0.88975 0.88979 0.77005 0.91583 0.82566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 9.81 101.05 0.99 1.11 16 2 O -0.31 -2.88 10.36 -19.76 -0.20 -3.09 16 3 C 0.08 0.78 6.69 -39.16 -0.26 0.52 16 4 C -0.16 -1.14 9.03 -39.47 -0.36 -1.49 16 5 C -0.11 -0.79 9.96 -39.38 -0.39 -1.19 16 6 C 0.14 1.40 6.28 -83.69 -0.53 0.87 16 7 N -0.65 -6.44 5.33 -10.27 -0.05 -6.49 16 8 C 0.51 6.69 7.62 -11.64 -0.09 6.61 16 9 O -0.49 -7.57 14.16 5.47 0.08 -7.50 16 10 C 0.51 7.40 7.88 -11.64 -0.09 7.31 16 11 O -0.53 -8.11 16.48 5.49 0.09 -8.02 16 12 N -0.67 -10.88 5.52 -61.94 -0.34 -11.22 16 13 C 0.11 1.81 6.15 -5.19 -0.03 1.78 16 14 C 0.42 9.44 7.85 -10.99 -0.09 9.36 16 15 O -0.59 -15.09 15.24 5.55 0.08 -15.00 16 16 N -0.55 -13.13 5.29 -10.96 -0.06 -13.18 16 17 C -0.31 -8.16 9.68 -14.93 -0.14 -8.30 16 18 H 0.11 3.00 7.16 -52.48 -0.38 2.62 16 19 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 20 N -0.89 -23.33 13.05 55.50 0.72 -22.61 16 21 Si 0.93 20.29 29.55 -169.99 -5.02 15.27 16 22 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 23 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 24 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 25 C -0.12 -1.39 8.63 -39.33 -0.34 -1.73 16 26 C 0.09 1.10 7.30 -39.32 -0.29 0.81 16 27 F -0.13 -1.67 17.11 2.25 0.04 -1.63 16 28 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.18 7.67 -51.93 -0.40 -0.22 16 30 H 0.06 0.19 7.65 -51.93 -0.40 -0.20 16 31 H 0.14 0.58 6.29 -52.49 -0.33 0.25 16 32 H 0.14 0.63 8.06 -52.49 -0.42 0.20 16 33 H 0.43 3.30 8.30 -40.82 -0.34 2.96 16 34 H 0.42 7.40 6.91 -40.82 -0.28 7.12 16 35 H 0.09 1.45 8.14 -51.92 -0.42 1.02 16 36 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 37 H 0.40 9.04 7.90 -40.82 -0.32 8.72 16 38 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 39 H 0.16 2.00 6.41 -52.49 -0.34 1.66 16 LS Contribution 354.87 15.07 5.35 5.35 Total: -1.00 -32.45 354.87 -4.64 -37.09 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -3.61 Total: 14.82 kcal Atomic # 6 Polarization: 17.94 SS G_CDS: -1.71 Total: 16.23 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: 0.27 Total: -53.51 kcal Atomic # 8 Polarization: -33.66 SS G_CDS: 0.05 Total: -33.61 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.45 -4.64 -37.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117415708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.359 kcal (2) G-P(sol) polarization free energy of solvation -32.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds