Wall clock time and date at job start Tue Mar 31 2020 23:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36007 * 116.99832 * 2 1 4 4 C 1.38680 * 119.98766 * 359.72221 * 3 2 1 5 5 C 1.38090 * 120.04519 * 180.28490 * 4 3 2 6 6 C 1.38929 * 120.01867 * 359.97438 * 5 4 3 7 7 N 1.39857 * 120.01356 * 180.02562 * 6 5 4 8 8 C 1.34781 * 119.99852 * 213.34154 * 7 6 5 9 9 O 1.21380 * 119.99936 * 5.27642 * 8 7 6 10 10 C 1.49334 * 119.99760 * 185.27284 * 8 7 6 11 11 O 1.21360 * 120.00315 * 0.02562 * 10 8 7 12 12 N 1.34773 * 119.99545 * 179.97438 * 10 8 7 13 13 C 1.46508 * 119.99828 * 180.02562 * 12 10 8 14 14 C 1.50696 * 109.47029 * 179.97438 * 13 12 10 15 15 O 1.21288 * 120.00211 * 0.02562 * 14 13 12 16 16 N 1.34779 * 119.99561 * 179.97438 * 14 13 12 17 17 C 1.37101 * 119.99663 * 179.97438 * 16 14 13 18 18 H 1.08004 * 120.00301 * 0.02562 * 17 16 14 19 19 C 1.38950 * 119.99801 * 180.02562 * 17 16 14 20 20 N 1.31412 * 120.00206 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99911 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47148 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47096 * 119.99614 * 21 19 17 24 24 H 1.48499 * 109.46921 * 239.99950 * 21 19 17 25 25 C 1.38904 * 119.97337 * 0.02562 * 6 5 4 26 26 C 1.38243 * 119.95633 * 359.97438 * 25 6 5 27 27 F 1.35096 * 120.00819 * 179.97438 * 26 25 6 28 28 H 1.09001 * 109.47366 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47309 * 300.00107 * 1 2 3 30 30 H 1.09000 * 109.47261 * 60.00443 * 1 2 3 31 31 H 1.07994 * 119.97544 * 0.25627 * 4 3 2 32 32 H 1.07998 * 119.99481 * 179.97438 * 5 4 3 33 33 H 0.97004 * 120.00154 * 33.34200 * 7 6 5 34 34 H 0.96998 * 120.00592 * 359.97438 * 12 10 8 35 35 H 1.09008 * 109.46582 * 299.99984 * 13 12 10 36 36 H 1.08999 * 109.47243 * 59.99540 * 13 12 10 37 37 H 0.96995 * 120.00515 * 0.02562 * 16 14 13 38 38 H 0.97004 * 119.99961 * 180.02562 * 20 19 17 39 39 H 1.07996 * 120.02137 * 180.02562 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2908 2.3747 -0.0058 5 6 1.9165 3.6057 -0.0118 6 6 3.3038 3.6803 -0.0114 7 7 3.9373 4.9272 -0.0169 8 6 5.1123 5.0832 -0.6586 9 8 5.5733 4.1696 -1.3113 10 6 5.8468 6.3801 -0.5664 11 8 5.3861 7.2934 0.0866 12 7 7.0219 6.5359 -1.2077 13 6 7.7429 7.8081 -1.1168 14 6 9.0172 7.7215 -1.9166 15 8 9.2956 6.6980 -2.5049 16 7 9.8470 8.7817 -1.9789 17 6 11.0066 8.7027 -2.7060 18 1 11.2549 7.7911 -3.2293 19 6 11.8624 9.7956 -2.7698 20 7 11.5601 10.9049 -2.1336 21 14 13.4421 9.6882 -3.7612 22 1 13.5488 8.3417 -4.3781 23 1 13.4286 10.7219 -4.8272 24 1 14.6047 9.9155 -2.8658 25 6 4.0613 2.5161 -0.0056 26 6 3.4339 1.2842 0.0004 27 9 4.1696 0.1512 0.0055 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.2124 2.3175 -0.0062 32 1 1.3273 4.5108 -0.0167 33 1 3.5311 5.6796 0.4411 34 1 7.3908 5.8056 -1.7287 35 1 7.1183 8.6087 -1.5133 36 1 7.9822 8.0165 -0.0741 37 1 9.6242 9.6003 -1.5087 38 1 12.1573 11.6680 -2.1784 39 1 5.1398 2.5731 -0.0048 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117415708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:51 Heat of formation + Delta-G solvation = -175.518276 kcal Electronic energy + Delta-G solvation = -27512.932518 eV Core-core repulsion = 22949.118289 eV Total energy + Delta-G solvation = -4563.814229 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.92990 -42.27513 -41.07891 -40.42824 -39.68615 -38.49102 -36.44549 -35.88609 -35.14548 -33.39402 -31.89345 -30.65611 -29.73762 -28.22570 -26.86697 -25.40918 -24.11669 -23.06965 -21.54275 -21.46432 -20.34582 -19.92942 -19.41905 -18.82155 -18.17678 -17.77551 -17.29198 -17.25075 -17.16904 -16.79746 -16.66834 -16.25801 -16.22692 -16.07647 -15.82917 -15.67339 -15.32431 -15.10023 -14.97799 -14.20037 -14.03296 -13.77764 -13.61522 -13.56443 -13.49858 -13.17658 -12.92577 -12.75298 -12.45327 -12.44823 -12.17701 -12.12137 -11.59354 -11.17789 -10.91898 -10.59870 -10.45042 -10.10156 -10.03990 -8.95161 -8.52322 -6.02068 -0.25166 -0.00559 0.38928 1.02246 1.34389 1.43512 1.56996 1.86885 1.93407 2.15857 2.24900 2.41153 2.46158 3.02464 3.11141 3.14956 3.26633 3.63272 3.85980 3.97433 4.16209 4.29183 4.36650 4.37855 4.38240 4.44679 4.50393 4.75809 4.85914 4.92098 4.93787 5.02124 5.08576 5.38287 5.51705 5.74857 5.90864 6.16967 6.25136 6.47083 6.53480 6.73057 7.03337 7.42141 7.93906 8.64435 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.030564 B = 0.001772 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.877285 B =15793.831772 C =16524.105375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.335 6.335 3 C 0.082 3.918 4 C -0.149 4.149 5 C -0.087 4.087 6 C 0.122 3.878 7 N -0.624 5.624 8 C 0.514 3.486 9 O -0.520 6.520 10 C 0.516 3.484 11 O -0.530 6.530 12 N -0.678 5.678 13 C 0.119 3.881 14 C 0.428 3.572 15 O -0.627 6.627 16 N -0.555 5.555 17 C -0.338 4.338 18 H 0.084 0.916 19 C -0.007 4.007 20 N -0.912 5.912 21 Si 0.995 3.005 22 H -0.273 1.273 23 H -0.270 1.270 24 H -0.271 1.271 25 C -0.134 4.134 26 C 0.057 3.943 27 F -0.147 7.147 28 H 0.116 0.884 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.184 0.816 32 H 0.180 0.820 33 H 0.439 0.561 34 H 0.419 0.581 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.401 0.599 38 H 0.280 0.720 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.622 -12.495 7.938 30.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.249 6.249 3 C 0.035 3.965 4 C -0.168 4.168 5 C -0.106 4.106 6 C 0.028 3.972 7 N -0.273 5.273 8 C 0.296 3.704 9 O -0.394 6.394 10 C 0.296 3.704 11 O -0.408 6.408 12 N -0.333 5.333 13 C -0.008 4.008 14 C 0.215 3.785 15 O -0.515 6.515 16 N -0.191 5.191 17 C -0.468 4.468 18 H 0.102 0.898 19 C -0.208 4.208 20 N -0.552 5.552 21 Si 0.818 3.182 22 H -0.198 1.198 23 H -0.195 1.195 24 H -0.196 1.196 25 C -0.155 4.155 26 C 0.037 3.963 27 F -0.125 7.125 28 H 0.134 0.866 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.201 0.799 32 H 0.197 0.803 33 H 0.280 0.720 34 H 0.258 0.742 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.236 0.764 38 H 0.090 0.910 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -26.163 -13.143 7.570 30.241 hybrid contribution 1.195 0.276 -0.306 1.264 sum -24.968 -12.867 7.264 29.013 Atomic orbital electron populations 1.23499 0.75322 1.06014 1.03184 1.86142 1.24436 1.25719 1.88602 1.19162 0.90044 0.87052 1.00208 1.21346 1.02035 0.89301 1.04100 1.21193 0.90772 1.00021 0.98651 1.17425 0.92221 0.83488 1.04070 1.42901 1.20574 1.11968 1.51819 1.20128 0.82460 0.88078 0.79768 1.90841 1.66858 1.42516 1.39225 1.19742 0.81953 0.88033 0.80699 1.90767 1.67345 1.41871 1.40812 1.45541 1.20631 1.17190 1.49909 1.21032 0.91256 0.86502 1.01963 1.20446 0.87188 0.84518 0.86378 1.90522 1.77269 1.32000 1.51697 1.41795 1.19029 1.13716 1.44543 1.19755 0.98131 1.00726 1.28154 0.89831 1.26067 1.02406 0.94154 0.98183 1.69667 1.39444 1.03693 1.42421 0.84844 0.77056 0.78358 0.77919 1.19771 1.19538 1.19594 1.20893 1.01435 0.90166 1.02987 1.16961 0.87004 0.82191 1.10157 1.91460 1.77233 1.49350 1.94503 0.86596 0.90423 0.90755 0.79877 0.80310 0.72001 0.74227 0.86895 0.87039 0.76417 0.91008 0.84910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.81 113.37 1.11 1.19 16 2 O -0.33 -5.81 10.36 -93.63 -0.97 -6.78 16 3 C 0.08 1.49 6.69 22.54 0.15 1.64 16 4 C -0.15 -1.56 9.03 22.34 0.20 -1.36 16 5 C -0.09 -0.94 9.96 22.40 0.22 -0.71 16 6 C 0.12 2.25 6.28 38.19 0.24 2.48 16 7 N -0.62 -11.50 5.33 -304.76 -1.62 -13.13 16 8 C 0.51 13.32 7.62 87.23 0.66 13.99 16 9 O -0.52 -16.60 14.16 -3.34 -0.05 -16.65 16 10 C 0.52 14.57 7.88 87.23 0.69 15.26 16 11 O -0.53 -15.31 16.48 -3.28 -0.05 -15.36 16 12 N -0.68 -21.92 5.52 -468.25 -2.59 -24.50 16 13 C 0.12 3.98 6.15 85.63 0.53 4.50 16 14 C 0.43 19.26 7.85 87.66 0.69 19.95 16 15 O -0.63 -32.86 15.24 -3.05 -0.05 -32.91 16 16 N -0.56 -27.07 5.29 -306.98 -1.62 -28.69 16 17 C -0.34 -18.47 9.68 84.04 0.81 -17.65 16 18 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 19 C -0.01 -0.36 5.50 84.93 0.47 0.11 16 20 N -0.91 -47.33 13.05 21.66 0.28 -47.05 16 21 Si 0.99 41.56 29.55 68.60 2.03 43.58 16 22 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 23 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 24 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 25 C -0.13 -3.23 8.63 22.43 0.19 -3.04 16 26 C 0.06 1.39 7.30 22.44 0.16 1.55 16 27 F -0.15 -4.20 17.11 44.97 0.77 -3.43 16 28 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.08 0.17 7.67 -2.39 -0.02 0.15 16 30 H 0.07 0.22 7.65 -2.39 -0.02 0.20 16 31 H 0.18 0.45 6.29 -2.91 -0.02 0.43 16 32 H 0.18 0.57 8.06 -2.91 -0.02 0.55 16 33 H 0.44 5.65 8.30 -92.71 -0.77 4.88 16 34 H 0.42 14.95 6.91 -92.71 -0.64 14.31 16 35 H 0.11 3.35 8.14 -2.38 -0.02 3.33 16 36 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 37 H 0.40 18.41 7.90 -92.71 -0.73 17.68 16 38 H 0.28 13.57 8.31 -92.71 -0.77 12.80 16 39 H 0.13 3.75 6.41 -2.91 -0.02 3.73 16 Total: -1.00 -72.88 354.87 1.30 -71.58 By element: Atomic # 1 Polarization: 36.39 SS G_CDS: -0.97 Total: 35.42 kcal Atomic # 6 Polarization: 31.78 SS G_CDS: 6.13 Total: 37.91 kcal Atomic # 7 Polarization: -107.82 SS G_CDS: -5.55 Total: -113.37 kcal Atomic # 8 Polarization: -70.58 SS G_CDS: -1.12 Total: -71.70 kcal Atomic # 9 Polarization: -4.20 SS G_CDS: 0.77 Total: -3.43 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.58 kcal Total: -72.88 1.30 -71.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117415708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.935 kcal (2) G-P(sol) polarization free energy of solvation -72.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds