Wall clock time and date at job start Tue Mar 31 2020 22:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34780 * 119.99750 * 2 1 4 4 O 1.21581 * 120.00091 * 180.02562 * 3 2 1 5 5 N 1.34781 * 119.99993 * 0.02562 * 3 2 1 6 6 C 1.39246 * 119.99848 * 185.40040 * 5 3 2 7 7 C 1.39680 * 119.57433 * 185.49540 * 6 5 3 8 8 C 1.38651 * 119.49519 * 179.72904 * 7 6 5 9 9 C 1.38353 * 118.66685 * 0.48990 * 8 7 6 10 10 C 1.40568 * 119.13368 * 359.51147 * 9 8 7 11 11 C 1.41337 * 119.78715 * 180.22902 * 10 9 8 12 12 H 1.08005 * 119.99711 * 354.55607 * 11 10 9 13 13 C 1.40026 * 120.00118 * 174.56347 * 11 10 9 14 14 N 1.30742 * 119.99849 * 354.57543 * 13 11 10 15 15 Si 1.86798 * 120.00127 * 174.57516 * 13 11 10 16 16 H 1.48497 * 109.46986 * 94.99652 * 15 13 11 17 17 H 1.48509 * 109.46858 * 214.99879 * 15 13 11 18 18 H 1.48501 * 109.46853 * 334.99435 * 15 13 11 19 19 N 1.31907 * 119.57482 * 5.47601 * 6 5 3 20 20 C 1.46492 * 120.00158 * 180.02562 * 2 1 3 21 21 H 1.09006 * 110.01281 * 178.61293 * 20 2 1 22 22 C 1.53873 * 110.03118 * 299.99669 * 20 2 1 23 23 C 1.54158 * 108.70790 * 166.47169 * 22 20 2 24 24 S 1.82922 * 105.08775 * 332.09178 * 23 22 20 25 25 O 1.42101 * 109.35405 * 115.52127 * 24 23 22 26 26 O 1.42098 * 109.35244 * 248.59383 * 24 23 22 27 27 C 1.55054 * 110.02855 * 57.19296 * 20 2 1 28 28 H 1.09003 * 109.47393 * 89.99355 * 1 2 3 29 29 H 1.09004 * 109.46917 * 209.99706 * 1 2 3 30 30 H 1.08996 * 109.47123 * 329.99480 * 1 2 3 31 31 H 0.96998 * 119.99780 * 5.40639 * 5 3 2 32 32 H 1.08000 * 120.25612 * 359.97438 * 7 6 5 33 33 H 1.08000 * 120.66682 * 180.24870 * 8 7 6 34 34 H 1.08007 * 120.42991 * 179.77743 * 9 8 7 35 35 H 0.96998 * 120.00031 * 180.02562 * 14 13 11 36 36 H 1.09000 * 109.64466 * 286.32608 * 22 20 2 37 37 H 1.09001 * 109.64432 * 46.61676 * 22 20 2 38 38 H 1.09003 * 110.32178 * 90.99339 * 23 22 20 39 39 H 1.09001 * 110.31981 * 213.19258 * 23 22 20 40 40 H 1.09004 * 110.78281 * 316.53752 * 27 20 2 41 41 H 1.08997 * 110.79263 * 79.99995 * 27 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3547 1.1673 -0.0005 5 7 1.4649 2.3345 0.0005 6 6 2.1564 3.5377 -0.1130 7 6 1.4634 4.7448 0.0041 8 6 2.1546 5.9420 -0.1036 9 6 3.5179 5.9027 -0.3355 10 6 4.1581 4.6559 -0.4439 11 6 5.5511 4.5997 -0.6759 12 1 6.1055 5.5088 -0.8569 13 6 6.2124 3.3655 -0.6713 14 7 5.5635 2.2774 -0.3482 15 14 8.0217 3.2735 -1.1267 16 1 8.8458 3.3191 0.1078 17 1 8.2858 2.0046 -1.8517 18 1 8.3718 4.4237 -1.9984 19 7 3.4576 3.5230 -0.3293 20 6 2.1975 -1.2686 -0.0006 21 1 3.2708 -1.0797 -0.0253 22 6 1.8351 -2.0870 1.2511 23 6 2.3400 -3.5311 1.0608 24 16 2.3347 -3.8030 -0.7481 25 8 3.6675 -4.0040 -1.1979 26 8 1.3258 -4.7472 -1.0794 27 6 1.7795 -2.1226 -1.2254 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 0.4982 2.3362 0.0800 32 1 0.3980 4.7457 0.1811 33 1 1.6383 6.8862 -0.0121 34 1 4.0837 6.8181 -0.4279 35 1 6.0217 1.4224 -0.3447 36 1 2.3094 -1.6455 2.1276 37 1 0.7534 -2.0916 1.3854 38 1 3.3506 -3.6340 1.4561 39 1 1.6674 -4.2349 1.5513 40 1 0.6986 -2.0972 -1.3639 41 1 2.2941 -1.7862 -2.1254 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434650607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:47 Heat of formation + Delta-G solvation = -18.117106 kcal Electronic energy + Delta-G solvation = -27802.332157 eV Core-core repulsion = 23811.556532 eV Total energy + Delta-G solvation = -3990.775626 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.04018 -38.21030 -37.21874 -36.70485 -36.16749 -34.24869 -33.65964 -32.90586 -30.33987 -29.95614 -28.81962 -26.96225 -25.67798 -25.01121 -22.56076 -21.42379 -20.80095 -19.15560 -19.03549 -18.38893 -17.25286 -16.99091 -16.50849 -16.18940 -15.77228 -15.33309 -15.03597 -14.69329 -14.51289 -14.39277 -14.20067 -13.69784 -13.34587 -13.23337 -12.93375 -12.78448 -12.58410 -12.38952 -12.28943 -12.22045 -12.04514 -12.01933 -11.92625 -11.22010 -11.18089 -10.95771 -10.91430 -10.67070 -10.59930 -10.48425 -9.97071 -9.74309 -9.24522 -9.04870 -8.44145 -7.99328 -7.28695 -6.99532 -6.18063 -4.40291 -0.18669 2.26409 2.80286 2.89266 3.08463 3.18476 3.20595 3.26115 3.37452 3.78693 3.94399 4.06473 4.15559 4.32565 4.37279 4.49315 4.54574 4.75377 4.91703 4.96471 5.25862 5.27698 5.34566 5.44170 5.58398 5.73361 5.76128 6.01070 6.06081 6.35304 6.47422 6.71477 6.74379 6.82643 7.13402 7.25707 7.57448 7.64475 7.78650 8.11552 8.22333 8.51175 8.75536 9.03077 9.40045 10.21897 10.46604 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012698 B = 0.003838 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.513541 B = 7293.271172 C = 9125.633516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.629 5.629 3 C 0.669 3.331 4 O -0.457 6.457 5 N -0.670 5.670 6 C 0.385 3.615 7 C -0.358 4.358 8 C -0.035 4.035 9 C -0.306 4.306 10 C 0.273 3.727 11 C -0.425 4.425 12 H 0.083 0.917 13 C 0.059 3.941 14 N -0.654 5.654 15 Si 0.895 3.105 16 H -0.272 1.272 17 H -0.277 1.277 18 H -0.263 1.263 19 N -0.474 5.474 20 C 0.167 3.833 21 H 0.129 0.871 22 C -0.128 4.128 23 C -0.588 4.588 24 S 2.391 3.609 25 O -0.932 6.932 26 O -0.942 6.942 27 C -0.603 4.603 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.396 0.604 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.273 0.727 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.608 -10.871 3.020 15.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.371 5.371 3 C 0.369 3.631 4 O -0.321 6.321 5 N -0.320 5.320 6 C 0.145 3.855 7 C -0.384 4.384 8 C -0.059 4.059 9 C -0.329 4.329 10 C 0.148 3.852 11 C -0.456 4.456 12 H 0.101 0.899 13 C -0.170 4.170 14 N -0.272 5.272 15 Si 0.719 3.281 16 H -0.197 1.197 17 H -0.202 1.202 18 H -0.187 1.187 19 N -0.193 5.193 20 C 0.059 3.941 21 H 0.147 0.853 22 C -0.168 4.168 23 C -0.718 4.718 24 S 2.574 3.426 25 O -0.929 6.929 26 O -0.939 6.939 27 C -0.734 4.734 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.231 0.769 32 H 0.108 0.892 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.085 0.915 36 H 0.117 0.883 37 H 0.104 0.896 38 H 0.158 0.842 39 H 0.157 0.843 40 H 0.156 0.844 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.918 -12.721 2.415 15.723 hybrid contribution -0.703 1.439 0.392 1.649 sum -9.621 -11.282 2.807 15.090 Atomic orbital electron populations 1.21702 0.81043 1.02663 1.01588 1.47038 1.05440 1.03975 1.80619 1.16357 0.86465 0.79986 0.80306 1.91380 1.08414 1.83384 1.48880 1.42679 1.09264 1.03832 1.76197 1.18308 0.90951 0.82362 0.93857 1.20407 0.98274 0.92041 1.27653 1.20549 0.94096 0.95589 0.95686 1.21628 0.94649 0.98206 1.18405 1.18349 0.93284 0.85576 0.87955 1.19584 0.91461 0.93783 1.40728 0.89937 1.26154 0.99578 0.95978 0.95338 1.70276 1.34730 0.98362 1.23841 0.86525 0.83465 0.78783 0.79339 1.19748 1.20174 1.18705 1.68578 1.02064 1.28733 1.19909 1.21334 1.00302 0.83285 0.89137 0.85287 1.22308 1.03110 0.90720 1.00626 1.30434 1.11409 1.05043 1.24909 1.08943 0.75736 0.78178 0.79741 1.93650 1.35446 1.84676 1.79091 1.93607 1.59901 1.58084 1.82301 1.31081 1.12521 1.21395 1.08368 0.92809 0.91111 0.91366 0.76894 0.89198 0.88588 0.88537 0.91531 0.88280 0.89570 0.84159 0.84335 0.84373 0.83817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.65 9.06 59.85 0.54 1.19 16 2 N -0.63 -8.36 2.82 -177.90 -0.50 -8.86 16 3 C 0.67 12.89 8.23 -86.91 -0.72 12.18 16 4 O -0.46 -11.04 11.56 5.29 0.06 -10.98 16 5 N -0.67 -12.71 5.26 -15.78 -0.08 -12.79 16 6 C 0.38 9.17 7.41 -154.99 -1.15 8.02 16 7 C -0.36 -7.84 9.96 -38.89 -0.39 -8.22 16 8 C -0.03 -0.78 10.15 -39.39 -0.40 -1.18 16 9 C -0.31 -7.60 9.83 -38.66 -0.38 -7.98 16 10 C 0.27 7.58 6.53 -85.00 -0.56 7.03 16 11 C -0.43 -11.59 9.13 -37.73 -0.34 -11.94 16 12 H 0.08 2.11 7.85 -52.48 -0.41 1.70 16 13 C 0.06 1.54 5.48 -17.35 -0.10 1.44 16 14 N -0.65 -17.85 9.12 55.55 0.51 -17.34 16 15 Si 0.89 19.20 29.56 -169.99 -5.03 14.17 16 16 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 17 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 18 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 19 N -0.47 -13.09 5.80 -10.26 -0.06 -13.15 16 20 C 0.17 1.92 2.97 -66.39 -0.20 1.72 16 21 H 0.13 1.82 6.94 -51.93 -0.36 1.46 16 22 C -0.13 -1.04 5.88 -25.67 -0.15 -1.19 16 23 C -0.59 -3.97 7.26 37.76 0.27 -3.69 16 24 S 2.39 22.57 6.10 -107.50 -0.66 21.91 16 25 O -0.93 -12.79 18.15 -57.73 -1.05 -13.84 16 26 O -0.94 -11.37 18.15 -57.73 -1.05 -12.41 16 27 C -0.60 -5.57 6.78 38.24 0.26 -5.31 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.42 6.30 -51.93 -0.33 0.10 16 30 H 0.07 0.55 6.29 -51.93 -0.33 0.23 16 31 H 0.40 5.74 6.39 -40.82 -0.26 5.48 16 32 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 34 H 0.10 2.23 8.06 -52.48 -0.42 1.81 16 35 H 0.27 6.99 8.29 -40.82 -0.34 6.65 16 36 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.09 0.52 6.33 -51.93 -0.33 0.19 16 38 H 0.14 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.14 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.14 0.97 7.28 -51.93 -0.38 0.60 16 41 H 0.14 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 347.08 15.07 5.23 5.23 Total: -1.00 -38.20 347.08 -10.83 -49.03 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -4.91 Total: 6.97 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -3.30 Total: -7.94 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: -0.14 Total: -52.14 kcal Atomic # 8 Polarization: -35.20 SS G_CDS: -2.03 Total: -37.23 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.03 Total: 14.17 kcal Atomic # 16 Polarization: 22.57 SS G_CDS: -0.66 Total: 21.91 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -38.20 -10.83 -49.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434650607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.911 kcal (2) G-P(sol) polarization free energy of solvation -38.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds