Wall clock time and date at job start Tue Mar 31 2020 22:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34780 * 119.99750 * 2 1 4 4 O 1.21581 * 120.00091 * 180.02562 * 3 2 1 5 5 N 1.34781 * 119.99993 * 0.02562 * 3 2 1 6 6 C 1.39246 * 119.99848 * 185.40040 * 5 3 2 7 7 C 1.39680 * 119.57433 * 185.49540 * 6 5 3 8 8 C 1.38651 * 119.49519 * 179.72904 * 7 6 5 9 9 C 1.38353 * 118.66685 * 0.48990 * 8 7 6 10 10 C 1.40568 * 119.13368 * 359.51147 * 9 8 7 11 11 C 1.41337 * 119.78715 * 180.22902 * 10 9 8 12 12 H 1.08005 * 119.99711 * 354.55607 * 11 10 9 13 13 C 1.40026 * 120.00118 * 174.56347 * 11 10 9 14 14 N 1.30742 * 119.99849 * 354.57543 * 13 11 10 15 15 Si 1.86798 * 120.00127 * 174.57516 * 13 11 10 16 16 H 1.48497 * 109.46986 * 94.99652 * 15 13 11 17 17 H 1.48509 * 109.46858 * 214.99879 * 15 13 11 18 18 H 1.48501 * 109.46853 * 334.99435 * 15 13 11 19 19 N 1.31907 * 119.57482 * 5.47601 * 6 5 3 20 20 C 1.46492 * 120.00158 * 180.02562 * 2 1 3 21 21 H 1.09006 * 110.01281 * 178.61293 * 20 2 1 22 22 C 1.53873 * 110.03118 * 299.99669 * 20 2 1 23 23 C 1.54158 * 108.70790 * 166.47169 * 22 20 2 24 24 S 1.82922 * 105.08775 * 332.09178 * 23 22 20 25 25 O 1.42101 * 109.35405 * 115.52127 * 24 23 22 26 26 O 1.42098 * 109.35244 * 248.59383 * 24 23 22 27 27 C 1.55054 * 110.02855 * 57.19296 * 20 2 1 28 28 H 1.09003 * 109.47393 * 89.99355 * 1 2 3 29 29 H 1.09004 * 109.46917 * 209.99706 * 1 2 3 30 30 H 1.08996 * 109.47123 * 329.99480 * 1 2 3 31 31 H 0.96998 * 119.99780 * 5.40639 * 5 3 2 32 32 H 1.08000 * 120.25612 * 359.97438 * 7 6 5 33 33 H 1.08000 * 120.66682 * 180.24870 * 8 7 6 34 34 H 1.08007 * 120.42991 * 179.77743 * 9 8 7 35 35 H 0.96998 * 120.00031 * 180.02562 * 14 13 11 36 36 H 1.09000 * 109.64466 * 286.32608 * 22 20 2 37 37 H 1.09001 * 109.64432 * 46.61676 * 22 20 2 38 38 H 1.09003 * 110.32178 * 90.99339 * 23 22 20 39 39 H 1.09001 * 110.31981 * 213.19258 * 23 22 20 40 40 H 1.09004 * 110.78281 * 316.53752 * 27 20 2 41 41 H 1.08997 * 110.79263 * 79.99995 * 27 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3547 1.1673 -0.0005 5 7 1.4649 2.3345 0.0005 6 6 2.1564 3.5377 -0.1130 7 6 1.4634 4.7448 0.0041 8 6 2.1546 5.9420 -0.1036 9 6 3.5179 5.9027 -0.3355 10 6 4.1581 4.6559 -0.4439 11 6 5.5511 4.5997 -0.6759 12 1 6.1055 5.5088 -0.8569 13 6 6.2124 3.3655 -0.6713 14 7 5.5635 2.2774 -0.3482 15 14 8.0217 3.2735 -1.1267 16 1 8.8458 3.3191 0.1078 17 1 8.2858 2.0046 -1.8517 18 1 8.3718 4.4237 -1.9984 19 7 3.4576 3.5230 -0.3293 20 6 2.1975 -1.2686 -0.0006 21 1 3.2708 -1.0797 -0.0253 22 6 1.8351 -2.0870 1.2511 23 6 2.3400 -3.5311 1.0608 24 16 2.3347 -3.8030 -0.7481 25 8 3.6675 -4.0040 -1.1979 26 8 1.3258 -4.7472 -1.0794 27 6 1.7795 -2.1226 -1.2254 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 0.4982 2.3362 0.0800 32 1 0.3980 4.7457 0.1811 33 1 1.6383 6.8862 -0.0121 34 1 4.0837 6.8181 -0.4279 35 1 6.0217 1.4224 -0.3447 36 1 2.3094 -1.6455 2.1276 37 1 0.7534 -2.0916 1.3854 38 1 3.3506 -3.6340 1.4561 39 1 1.6674 -4.2349 1.5513 40 1 0.6986 -2.0972 -1.3639 41 1 2.2941 -1.7862 -2.1254 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434650607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:46 Heat of formation + Delta-G solvation = -46.642644 kcal Electronic energy + Delta-G solvation = -27803.569118 eV Core-core repulsion = 23811.556532 eV Total energy + Delta-G solvation = -3992.012586 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.41107 -39.81172 -38.13267 -37.91829 -37.08474 -35.93395 -35.07520 -34.31419 -32.19769 -31.05213 -30.29507 -27.82606 -27.46810 -25.96481 -23.99474 -23.18520 -22.08690 -20.44770 -19.91757 -19.81601 -18.78671 -18.07951 -17.62026 -17.41762 -16.72429 -16.48417 -16.45919 -16.25577 -15.95649 -15.64489 -15.28502 -15.01351 -14.64922 -14.56744 -14.46440 -13.75655 -13.70951 -13.49435 -13.31528 -13.23109 -13.13079 -13.11134 -12.90586 -12.79373 -12.70650 -12.55031 -12.29483 -12.01314 -11.78581 -11.73432 -11.49607 -11.35611 -10.85845 -10.82083 -9.88627 -9.54963 -9.12617 -8.77453 -8.06273 -6.39024 -0.95920 0.97057 1.28301 1.39976 1.44775 1.51367 1.54149 1.78094 2.26717 2.45566 2.64906 2.99647 3.02705 3.07091 3.40552 3.61985 3.73158 3.95887 3.97336 4.08359 4.29681 4.35150 4.53104 4.63739 4.66865 4.72372 4.80853 4.83853 4.90080 4.98026 5.01063 5.06624 5.09827 5.28955 5.59221 5.69856 5.83894 5.93512 5.98853 6.25617 6.41317 6.82539 7.05115 7.12983 7.94429 8.37581 8.57814 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012698 B = 0.003838 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.513541 B = 7293.271172 C = 9125.633516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.618 5.618 3 C 0.660 3.340 4 O -0.515 6.515 5 N -0.659 5.659 6 C 0.364 3.636 7 C -0.345 4.345 8 C -0.033 4.033 9 C -0.332 4.332 10 C 0.241 3.759 11 C -0.468 4.468 12 H 0.084 0.916 13 C 0.015 3.985 14 N -0.687 5.687 15 Si 0.969 3.031 16 H -0.264 1.264 17 H -0.276 1.276 18 H -0.257 1.257 19 N -0.509 5.509 20 C 0.154 3.846 21 H 0.090 0.910 22 C -0.122 4.122 23 C -0.561 4.561 24 S 2.404 3.596 25 O -0.984 6.984 26 O -0.966 6.966 27 C -0.595 4.595 28 H 0.066 0.934 29 H 0.109 0.891 30 H 0.077 0.923 31 H 0.417 0.583 32 H 0.133 0.867 33 H 0.137 0.863 34 H 0.103 0.897 35 H 0.270 0.730 36 H 0.094 0.906 37 H 0.121 0.879 38 H 0.148 0.852 39 H 0.175 0.825 40 H 0.168 0.832 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.466 -11.453 4.126 18.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.359 5.359 3 C 0.359 3.641 4 O -0.382 6.382 5 N -0.311 5.311 6 C 0.124 3.876 7 C -0.370 4.370 8 C -0.057 4.057 9 C -0.355 4.355 10 C 0.115 3.885 11 C -0.499 4.499 12 H 0.102 0.898 13 C -0.211 4.211 14 N -0.306 5.306 15 Si 0.790 3.210 16 H -0.189 1.189 17 H -0.201 1.201 18 H -0.180 1.180 19 N -0.228 5.228 20 C 0.047 3.953 21 H 0.109 0.891 22 C -0.161 4.161 23 C -0.694 4.694 24 S 2.591 3.409 25 O -0.981 6.981 26 O -0.963 6.963 27 C -0.726 4.726 28 H 0.084 0.916 29 H 0.128 0.872 30 H 0.096 0.904 31 H 0.256 0.744 32 H 0.150 0.850 33 H 0.155 0.845 34 H 0.121 0.879 35 H 0.081 0.919 36 H 0.113 0.887 37 H 0.139 0.861 38 H 0.166 0.834 39 H 0.193 0.807 40 H 0.186 0.814 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -11.871 -13.347 3.498 18.201 hybrid contribution -0.073 1.654 0.111 1.660 sum -11.944 -11.692 3.609 17.100 Atomic orbital electron populations 1.22114 0.77689 1.05137 1.03227 1.46910 1.07350 1.02500 1.79113 1.16671 0.86189 0.81292 0.79905 1.91366 1.11115 1.84525 1.51217 1.42521 1.10133 1.02686 1.75764 1.18825 0.90543 0.84770 0.93425 1.20904 1.00253 0.91118 1.24735 1.21028 0.93199 0.97655 0.93841 1.21805 0.96278 0.97552 1.19841 1.18819 0.94127 0.86934 0.88608 1.19875 0.92219 0.94545 1.43250 0.89771 1.26956 1.03978 0.95274 0.94910 1.70471 1.36312 0.98537 1.25262 0.85397 0.77749 0.78635 0.79169 1.18910 1.20121 1.18012 1.68555 1.04066 1.29218 1.20962 1.21471 0.98450 0.83364 0.92002 0.89137 1.22290 1.05288 0.90352 0.98183 1.30288 1.13029 1.05011 1.21058 1.08395 0.74000 0.77522 0.81022 1.93585 1.37957 1.85470 1.81067 1.93570 1.60079 1.58992 1.83620 1.31003 1.14208 1.20420 1.06929 0.91574 0.87226 0.90429 0.74356 0.84960 0.84489 0.87888 0.91935 0.88729 0.86078 0.83377 0.80738 0.81397 0.85230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.82 9.06 127.77 1.16 1.98 16 2 N -0.62 -15.57 2.82 -835.01 -2.36 -17.93 16 3 C 0.66 25.64 8.23 179.05 1.47 27.12 16 4 O -0.51 -26.15 11.56 -3.97 -0.05 -26.19 16 5 N -0.66 -24.42 5.26 -322.11 -1.69 -26.11 16 6 C 0.36 17.30 7.41 133.26 0.99 18.29 16 7 C -0.34 -14.31 9.96 22.72 0.23 -14.08 16 8 C -0.03 -1.41 10.15 22.40 0.23 -1.19 16 9 C -0.33 -16.71 9.83 22.87 0.22 -16.48 16 10 C 0.24 13.90 6.53 40.19 0.26 14.16 16 11 C -0.47 -26.83 9.13 23.47 0.21 -26.62 16 12 H 0.08 4.54 7.85 -2.91 -0.02 4.51 16 13 C 0.01 0.80 5.48 85.29 0.47 1.27 16 14 N -0.69 -39.75 9.12 21.84 0.20 -39.55 16 15 Si 0.97 41.33 29.56 68.60 2.03 43.36 16 16 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 17 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 18 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 19 N -0.51 -29.06 5.80 -186.37 -1.08 -30.14 16 20 C 0.15 3.43 2.97 45.99 0.14 3.57 16 21 H 0.09 2.75 6.94 -2.38 -0.02 2.74 16 22 C -0.12 -1.61 5.88 31.28 0.18 -1.42 16 23 C -0.56 -5.91 7.26 72.37 0.53 -5.39 16 24 S 2.40 43.27 6.10 -56.49 -0.34 42.93 16 25 O -0.98 -28.02 18.15 -127.47 -2.31 -30.33 16 26 O -0.97 -21.78 18.15 -127.47 -2.31 -24.09 16 27 C -0.59 -10.41 6.78 72.69 0.49 -9.91 16 28 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.11 0.69 6.30 -2.38 -0.02 0.67 16 30 H 0.08 0.94 6.29 -2.39 -0.02 0.93 16 31 H 0.42 11.03 6.39 -92.71 -0.59 10.43 16 32 H 0.13 4.30 8.06 -2.91 -0.02 4.28 16 33 H 0.14 4.65 8.06 -2.91 -0.02 4.63 16 34 H 0.10 4.86 8.06 -2.91 -0.02 4.83 16 35 H 0.27 14.78 8.29 -92.71 -0.77 14.01 16 36 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.12 0.79 6.33 -2.39 -0.02 0.77 16 38 H 0.15 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.17 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.17 1.85 7.28 -2.38 -0.02 1.84 16 41 H 0.13 2.68 8.14 -2.39 -0.02 2.66 16 Total: -1.00 -89.97 347.08 -0.85 -90.82 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: 0.49 Total: 25.95 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: 6.58 Total: -8.70 kcal Atomic # 7 Polarization: -108.80 SS G_CDS: -4.93 Total: -113.73 kcal Atomic # 8 Polarization: -75.95 SS G_CDS: -4.67 Total: -80.62 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Atomic # 16 Polarization: 43.27 SS G_CDS: -0.34 Total: 42.93 kcal Total: -89.97 -0.85 -90.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434650607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.177 kcal (2) G-P(sol) polarization free energy of solvation -89.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds