Wall clock time and date at job start Tue Mar 31 2020 22:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34666 * 119.70609 * 2 1 4 4 O 1.21961 * 119.95818 * 359.97438 * 3 2 1 5 5 C 1.41251 * 120.08641 * 180.29351 * 3 2 1 6 6 C 1.36108 * 119.50958 * 359.72192 * 5 3 2 7 7 C 1.40413 * 119.41407 * 359.97438 * 6 5 3 8 8 C 1.36290 * 119.90660 * 0.02562 * 7 6 5 9 9 C 1.47889 * 119.75450 * 179.97438 * 8 7 6 10 10 O 1.21543 * 119.99893 * 174.35480 * 9 8 7 11 11 N 1.34768 * 119.99954 * 354.07854 * 9 8 7 12 12 C 1.46499 * 120.00278 * 179.97438 * 11 9 8 13 13 C 1.52993 * 109.47645 * 180.02562 * 12 11 9 14 14 N 1.46499 * 109.47256 * 180.02562 * 13 12 11 15 15 C 1.34781 * 120.00052 * 179.97438 * 14 13 12 16 16 O 1.21277 * 119.99953 * 0.02562 * 15 14 13 17 17 C 1.50700 * 120.00229 * 179.97438 * 15 14 13 18 18 S 1.80992 * 109.47241 * 180.02562 * 17 15 14 19 19 C 1.76203 * 100.00013 * 180.02562 * 18 17 15 20 20 H 1.07998 * 120.00150 * 359.97438 * 19 18 17 21 21 C 1.38798 * 119.99850 * 180.02562 * 19 18 17 22 22 N 1.31628 * 120.00317 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99749 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46987 * 60.00403 * 23 21 19 25 25 H 1.48498 * 109.46784 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47259 * 299.99917 * 23 21 19 27 27 H 1.09007 * 109.47626 * 245.01195 * 1 2 3 28 28 H 1.09000 * 109.47408 * 5.01445 * 1 2 3 29 29 H 1.08998 * 109.47666 * 125.01259 * 1 2 3 30 30 H 1.07999 * 120.24542 * 179.74014 * 5 3 2 31 31 H 1.07998 * 120.29418 * 179.97438 * 6 5 3 32 32 H 1.07999 * 120.04214 * 179.97438 * 7 6 5 33 33 H 0.96999 * 120.00545 * 359.97438 * 11 9 8 34 34 H 1.08997 * 109.47405 * 300.00962 * 12 11 9 35 35 H 1.09003 * 109.46599 * 59.99998 * 12 11 9 36 36 H 1.09006 * 109.47157 * 300.00507 * 13 12 11 37 37 H 1.09003 * 109.47319 * 60.00200 * 13 12 11 38 38 H 0.96995 * 120.00376 * 359.97438 * 14 13 12 39 39 H 1.09006 * 109.47066 * 300.00364 * 17 15 14 40 40 H 1.09003 * 109.47002 * 59.99807 * 17 15 14 41 41 H 0.97005 * 120.00359 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1323 1.1697 0.0000 4 8 1.5163 2.2223 -0.0005 5 6 3.5447 1.1791 -0.0063 6 6 4.2230 -0.0010 -0.0065 7 6 3.5063 -1.2084 0.0000 8 6 2.1435 -1.1896 0.0060 9 6 1.3919 -2.4633 0.0122 10 8 0.1814 -2.4541 0.1211 11 7 2.0488 -3.6338 -0.1084 12 6 1.3044 -4.8956 -0.1016 13 6 2.2803 -6.0644 -0.2515 14 7 1.5358 -7.3261 -0.2453 15 6 2.1927 -8.4968 -0.3660 16 8 3.4001 -8.5057 -0.4793 17 6 1.4269 -9.7947 -0.3591 18 16 2.5814 -11.1773 -0.5366 19 6 1.4499 -12.5275 -0.4988 20 1 0.3915 -12.3422 -0.3901 21 6 1.9190 -13.8292 -0.6076 22 7 3.2090 -14.0552 -0.7395 23 14 0.7194 -15.2607 -0.5667 24 1 -0.2438 -15.1315 -1.6895 25 1 1.4670 -16.5368 -0.7009 26 1 -0.0183 -15.2518 0.7220 27 1 -0.3634 -0.4341 0.9315 28 1 -0.3634 1.0237 -0.0898 29 1 -0.3634 -0.5896 -0.8416 30 1 4.0825 2.1156 -0.0105 31 1 5.3030 -0.0086 -0.0117 32 1 4.0342 -2.1505 -0.0006 33 1 3.0145 -3.6410 -0.1997 34 1 0.7631 -4.9931 0.8394 35 1 0.5966 -4.9042 -0.9305 36 1 2.8220 -5.9671 -1.1924 37 1 2.9879 -6.0556 0.5776 38 1 0.5701 -7.3190 -0.1544 39 1 0.8857 -9.8922 0.5820 40 1 0.7190 -9.8033 -1.1879 41 1 3.5368 -14.9649 -0.8159 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001686445874.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:41 Heat of formation + Delta-G solvation = -62.854372 kcal Electronic energy + Delta-G solvation = -25017.187115 eV Core-core repulsion = 21024.471536 eV Total energy + Delta-G solvation = -3992.715579 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.10569 -40.16028 -39.29311 -37.28762 -36.48494 -35.04380 -34.17700 -32.47754 -31.47557 -30.05404 -28.17283 -27.99352 -25.59105 -25.35096 -23.41126 -22.86384 -21.77630 -20.49934 -18.87578 -18.00442 -17.83707 -17.55596 -16.91678 -16.66667 -16.35459 -16.18626 -15.83263 -15.64894 -15.22783 -15.17270 -14.84606 -14.47005 -14.32277 -13.94714 -13.52481 -13.31496 -13.22705 -13.02221 -12.73073 -12.61636 -12.59901 -12.27960 -12.22745 -11.80088 -11.09885 -11.07449 -10.83394 -10.80455 -10.68410 -10.37067 -9.88450 -9.84200 -9.59711 -9.15499 -9.08599 -8.61090 -8.31613 -6.56551 -6.26514 -3.97954 -0.19612 1.05895 1.75859 2.18011 2.37417 2.93478 2.98767 3.09184 3.20365 3.24531 3.27443 3.56851 3.76915 4.00676 4.15589 4.19334 4.25767 4.53129 4.58363 4.61202 4.96529 4.98337 5.03022 5.04274 5.08870 5.22841 5.32803 5.40517 5.43740 5.44878 5.53946 5.57595 5.68293 5.79465 5.79931 6.05534 6.35908 6.37955 6.66615 7.29560 7.47162 7.48595 7.54805 8.30056 8.42905 9.18892 10.80801 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.039672 B = 0.001511 C = 0.001458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.611160 B =18531.990576 C =19201.500860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.477 5.477 3 C 0.512 3.488 4 O -0.545 6.545 5 C -0.213 4.213 6 C -0.029 4.029 7 C -0.179 4.179 8 C 0.118 3.882 9 C 0.558 3.442 10 O -0.517 6.517 11 N -0.707 5.707 12 C 0.109 3.891 13 C 0.110 3.890 14 N -0.737 5.737 15 C 0.535 3.465 16 O -0.515 6.515 17 C -0.154 4.154 18 S -0.059 6.059 19 C -0.538 4.538 20 H 0.073 0.927 21 C 0.075 3.925 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.155 0.845 31 H 0.146 0.854 32 H 0.151 0.849 33 H 0.408 0.592 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.402 0.598 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.152 27.336 1.701 27.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.189 5.189 3 C 0.313 3.687 4 O -0.427 6.427 5 C -0.235 4.235 6 C -0.050 4.050 7 C -0.204 4.204 8 C 0.007 3.993 9 C 0.342 3.658 10 O -0.393 6.393 11 N -0.361 5.361 12 C -0.015 4.015 13 C -0.015 4.015 14 N -0.393 5.393 15 C 0.321 3.679 16 O -0.388 6.388 17 C -0.305 4.305 18 S 0.167 5.833 19 C -0.686 4.686 20 H 0.091 0.909 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 H 0.105 0.895 28 H 0.112 0.888 29 H 0.106 0.894 30 H 0.173 0.827 31 H 0.164 0.836 32 H 0.169 0.831 33 H 0.245 0.755 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.236 0.764 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.332 27.848 1.563 27.894 hybrid contribution -2.038 -1.015 0.177 2.283 sum -2.370 26.833 1.740 26.994 Atomic orbital electron populations 1.22346 0.75806 1.04742 1.04938 1.45426 1.10060 1.05068 1.58298 1.17361 0.89352 0.82526 0.79458 1.90958 1.69856 1.29004 1.52858 1.22453 0.92571 1.00529 1.07927 1.21436 1.01302 0.91289 0.90989 1.20953 0.91032 1.00411 1.08044 1.20030 0.92371 0.86654 1.00286 1.17782 0.87040 0.83142 0.77810 1.90871 1.13143 1.86957 1.48318 1.45578 1.11621 1.05149 1.73746 1.21586 0.94734 0.81247 1.03917 1.21310 0.94333 0.82542 1.03337 1.45793 1.10849 1.04952 1.77729 1.20338 0.88129 0.84401 0.74993 1.90712 1.14114 1.86944 1.47045 1.23535 1.04578 0.97163 1.05186 1.85390 1.08817 0.93409 1.95657 1.22824 0.94816 0.92386 1.58555 0.90908 1.24989 0.95731 0.98340 0.94437 1.70001 1.12511 1.21628 1.46117 0.86219 0.80229 0.80214 0.78816 1.19922 1.20785 1.19916 0.89518 0.88751 0.89363 0.82709 0.83612 0.83127 0.75499 0.89948 0.89954 0.90707 0.90697 0.76411 0.89023 0.89025 0.92078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.52 8.93 59.84 0.53 1.06 16 2 N -0.48 -4.15 3.02 -122.80 -0.37 -4.52 16 3 C 0.51 5.12 7.43 -15.16 -0.11 5.00 16 4 O -0.55 -7.37 16.40 4.95 0.08 -7.29 16 5 C -0.21 -1.40 10.00 -39.20 -0.39 -1.79 16 6 C -0.03 -0.11 10.08 -39.53 -0.40 -0.51 16 7 C -0.18 -0.72 9.49 -39.46 -0.37 -1.10 16 8 C 0.12 0.79 6.63 -82.33 -0.55 0.24 16 9 C 0.56 4.02 7.69 -12.31 -0.09 3.92 16 10 O -0.52 -5.14 13.22 5.33 0.07 -5.07 16 11 N -0.71 -3.55 5.50 -61.24 -0.34 -3.89 16 12 C 0.11 0.65 5.79 -4.05 -0.02 0.62 16 13 C 0.11 0.88 5.79 -4.05 -0.02 0.86 16 14 N -0.74 -7.92 5.56 -60.29 -0.33 -8.26 16 15 C 0.54 8.89 7.85 -10.98 -0.09 8.81 16 16 O -0.51 -10.61 15.86 5.56 0.09 -10.52 16 17 C -0.15 -2.87 6.16 36.01 0.22 -2.65 16 18 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 19 C -0.54 -14.86 9.50 30.94 0.29 -14.57 16 20 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 21 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 22 N -0.87 -25.54 13.22 55.49 0.73 -24.81 16 23 Si 0.92 20.89 29.55 -169.99 -5.02 15.86 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 27 H 0.09 0.72 7.37 -51.93 -0.38 0.34 16 28 H 0.09 0.83 6.88 -51.93 -0.36 0.47 16 29 H 0.09 0.72 7.08 -51.93 -0.37 0.35 16 30 H 0.16 0.80 8.06 -52.49 -0.42 0.38 16 31 H 0.15 0.13 8.06 -52.49 -0.42 -0.29 16 32 H 0.15 0.14 6.34 -52.49 -0.33 -0.19 16 33 H 0.41 1.03 6.48 -40.82 -0.26 0.77 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.40 3.19 8.47 -40.82 -0.35 2.85 16 39 H 0.09 1.57 8.14 -51.91 -0.42 1.14 16 40 H 0.09 1.57 8.14 -51.92 -0.42 1.14 16 41 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 368.74 15.07 5.56 5.56 Total: -1.00 -38.19 368.74 -7.82 -46.01 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -4.98 Total: -1.18 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -1.10 Total: 1.87 kcal Atomic # 7 Polarization: -41.17 SS G_CDS: -0.31 Total: -41.48 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: 0.24 Total: -22.89 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -38.19 -7.82 -46.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001686445874.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.844 kcal (2) G-P(sol) polarization free energy of solvation -38.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds