Wall clock time and date at job start Tue Mar 31 2020 22:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31438 * 1 3 3 Si 1.86807 * 119.99527 * 2 1 4 4 H 1.48500 * 109.46927 * 239.99900 * 3 2 1 5 5 H 1.48498 * 109.47225 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46821 * 120.00200 * 3 2 1 7 7 C 1.38752 * 120.00210 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99790 * 180.02562 * 7 2 1 9 9 O 1.34912 * 119.99923 * 0.02562 * 7 2 1 10 10 C 1.34318 * 116.99963 * 179.97438 * 9 7 2 11 11 O 1.21205 * 120.00135 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99985 * 179.97438 * 10 9 7 13 13 C 1.53034 * 109.45736 * 59.93582 * 12 10 9 14 14 C 1.53199 * 109.31182 * 181.38215 * 13 12 10 15 15 N 1.46926 * 108.77448 * 305.36747 * 14 13 12 16 16 C 1.34772 * 120.62473 * 233.58438 * 15 14 13 17 17 O 1.21597 * 119.99779 * 174.83984 * 16 15 14 18 18 C 1.47567 * 120.00826 * 354.83982 * 16 15 14 19 19 C 1.39732 * 120.13598 * 313.12088 * 18 16 15 20 20 C 1.37747 * 119.90102 * 179.72222 * 19 18 16 21 21 C 1.38759 * 120.18872 * 0.57279 * 20 19 18 22 22 F 1.35105 * 119.85324 * 179.72817 * 21 20 19 23 23 C 1.38497 * 120.28847 * 359.69806 * 21 20 19 24 24 C 1.38192 * 120.08797 * 0.02562 * 23 21 20 25 25 F 1.35107 * 120.09065 * 180.02562 * 24 23 21 26 26 C 1.46920 * 118.73953 * 53.60793 * 15 14 13 27 27 C 1.53043 * 109.45877 * 180.02562 * 12 10 9 28 28 H 0.96997 * 120.00400 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.44681 * 299.97060 * 12 10 9 30 30 H 1.09003 * 109.49800 * 61.43479 * 13 12 10 31 31 H 1.09002 * 109.50009 * 301.33478 * 13 12 10 32 32 H 1.08998 * 109.58531 * 185.57962 * 14 13 12 33 33 H 1.08998 * 109.58085 * 65.15465 * 14 13 12 34 34 H 1.08001 * 120.05493 * 359.97438 * 19 18 16 35 35 H 1.08004 * 119.90410 * 180.27654 * 20 19 18 36 36 H 1.08003 * 119.95318 * 180.02562 * 23 21 20 37 37 H 1.08997 * 109.58894 * 66.17795 * 26 15 14 38 38 H 1.08996 * 109.58777 * 186.46122 * 26 15 14 39 39 H 1.09001 * 109.49914 * 58.66398 * 27 12 10 40 40 H 1.08998 * 109.52158 * 298.58295 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6179 0.0000 4 1 3.1020 1.6965 -1.2125 5 1 1.2832 2.7465 -0.0006 6 1 3.1021 1.6965 1.2125 7 6 2.0082 -1.2016 0.0005 8 1 3.0882 -1.2015 0.0010 9 8 1.3337 -2.3700 0.0005 10 6 2.0652 -3.4965 0.0005 11 8 3.2756 -3.4330 0.0010 12 6 1.3811 -4.8392 0.0011 13 6 0.5051 -4.9656 -1.2473 14 6 -0.2154 -6.3174 -1.2260 15 7 0.7846 -7.3840 -1.0799 16 6 0.8271 -8.4095 -1.9533 17 8 1.7163 -9.2355 -1.8782 18 6 -0.2053 -8.5302 -3.0007 19 6 -1.5562 -8.3853 -2.6742 20 6 -2.5156 -8.4931 -3.6568 21 6 -2.1451 -8.7570 -4.9677 22 9 -3.0920 -8.8669 -5.9251 23 6 -0.8088 -8.9077 -5.2991 24 6 0.1637 -8.7961 -4.3237 25 9 1.4674 -8.9425 -4.6470 26 6 1.7368 -7.3114 0.0366 27 6 2.4354 -5.9486 0.0016 28 1 -0.4850 0.8400 -0.0004 29 1 0.7592 -4.9293 0.8918 30 1 1.1298 -4.9004 -2.1382 31 1 -0.2306 -4.1614 -1.2586 32 1 -0.7624 -6.4546 -2.1588 33 1 -0.9085 -6.3487 -0.3854 34 1 -1.8476 -8.1850 -1.6538 35 1 -3.5594 -8.3767 -3.4053 36 1 -0.5265 -9.1125 -6.3213 37 1 1.2028 -7.4239 0.9801 38 1 2.4763 -8.1061 -0.0617 39 1 3.0734 -5.8438 0.8792 40 1 3.0426 -5.8744 -0.9005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000022447473.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:29 Heat of formation + Delta-G solvation = -176.050180 kcal Electronic energy + Delta-G solvation = -29084.655872 eV Core-core repulsion = 24500.898616 eV Total energy + Delta-G solvation = -4583.757256 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.48447 -49.31329 -40.74724 -39.31613 -38.52050 -37.16962 -35.21703 -33.13641 -32.20748 -31.78072 -31.19551 -30.53373 -26.75418 -25.21024 -24.02474 -23.83393 -22.95383 -21.74413 -20.22239 -19.26984 -18.55432 -17.90870 -17.74948 -17.50220 -16.61281 -16.51298 -16.20815 -16.10933 -15.65918 -15.19041 -15.03039 -14.91209 -14.70792 -14.56440 -14.43310 -14.33099 -13.85008 -13.47949 -13.22787 -12.91697 -12.85732 -12.76924 -12.43066 -12.12845 -11.98109 -11.78590 -11.36200 -11.28067 -11.17515 -10.68403 -10.55810 -10.46756 -10.37010 -10.13519 -9.82001 -9.55507 -9.21771 -9.05826 -8.74972 -8.60250 -6.44508 -4.11996 0.18572 0.50860 2.31067 2.65723 3.01231 3.10433 3.16769 3.20405 3.35013 3.48354 3.86241 3.89680 4.02387 4.09501 4.34993 4.45049 4.60085 4.73328 4.87298 5.01625 5.09208 5.17172 5.24089 5.26952 5.29577 5.38089 5.46269 5.49218 5.51419 5.55475 5.68737 5.77365 5.89389 6.11142 6.18165 6.25721 6.46961 6.48311 6.80153 7.15176 7.36704 7.89265 7.92525 8.68638 9.04983 9.82528 10.73335 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.014504 B = 0.002761 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.102017 B =10137.556751 C =11178.381915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.043 3.957 3 Si 0.942 3.058 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.383 4.383 8 H 0.094 0.906 9 O -0.213 6.213 10 C 0.400 3.600 11 O -0.555 6.555 12 C -0.069 4.069 13 C -0.126 4.126 14 C 0.101 3.899 15 N -0.601 5.601 16 C 0.563 3.437 17 O -0.527 6.527 18 C -0.174 4.174 19 C -0.030 4.030 20 C -0.168 4.168 21 C 0.152 3.848 22 F -0.126 7.126 23 C -0.199 4.199 24 C 0.182 3.818 25 F -0.113 7.113 26 C 0.114 3.886 27 C -0.115 4.115 28 H 0.270 0.730 29 H 0.097 0.903 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.153 0.847 35 H 0.152 0.848 36 H 0.156 0.844 37 H 0.073 0.927 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.535 -17.492 -6.163 20.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.161 4.161 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.195 1.195 7 C -0.459 4.459 8 H 0.111 0.889 9 O -0.120 6.120 10 C 0.246 3.754 11 O -0.452 6.452 12 C -0.088 4.088 13 C -0.164 4.164 14 C -0.022 4.022 15 N -0.334 5.334 16 C 0.350 3.650 17 O -0.404 6.404 18 C -0.178 4.178 19 C -0.048 4.048 20 C -0.187 4.187 21 C 0.132 3.868 22 F -0.105 7.105 23 C -0.218 4.218 24 C 0.161 3.839 25 F -0.091 7.091 26 C -0.008 4.008 27 C -0.153 4.153 28 H 0.079 0.921 29 H 0.115 0.885 30 H 0.089 0.911 31 H 0.116 0.884 32 H 0.108 0.892 33 H 0.098 0.902 34 H 0.170 0.830 35 H 0.169 0.831 36 H 0.173 0.827 37 H 0.092 0.908 38 H 0.115 0.885 39 H 0.104 0.896 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.910 -17.741 -6.155 20.377 hybrid contribution 0.438 0.943 -0.299 1.082 sum -7.472 -16.798 -6.453 19.484 Atomic orbital electron populations 1.69965 1.05939 1.27763 1.46634 1.25297 0.95800 0.98781 0.96183 0.85771 0.78678 0.79542 0.79368 1.19511 1.20359 1.19499 1.21159 0.92333 0.79952 1.52473 0.88868 1.83859 1.39320 1.13311 1.75492 1.23074 0.86628 0.87108 0.78599 1.90558 1.15795 1.88041 1.50800 1.20739 0.97272 0.90656 1.00176 1.21908 0.99893 0.96822 0.97778 1.22106 0.90596 0.86488 1.02987 1.48080 1.34238 1.22877 1.28220 1.17907 0.84398 0.81720 0.80948 1.90829 1.35576 1.41689 1.72256 1.20062 0.95379 1.09128 0.93242 1.21121 0.89766 0.93494 1.00441 1.21168 1.01816 1.04811 0.90909 1.17489 0.85066 0.98290 0.85973 1.91566 1.63180 1.92916 1.62797 1.21003 0.91068 1.08354 1.01397 1.17197 0.78720 0.96599 0.91386 1.91618 1.32483 1.92053 1.92963 1.21744 0.92354 0.98789 0.87922 1.21755 0.97303 0.91694 1.04548 0.92056 0.88505 0.91078 0.88396 0.89176 0.90231 0.82966 0.83072 0.82671 0.90843 0.88508 0.89629 0.90687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.60 13.67 55.48 0.76 -23.84 16 2 C 0.04 1.20 5.49 -17.53 -0.10 1.10 16 3 Si 0.94 21.00 29.55 -169.99 -5.02 15.98 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 7 C -0.38 -11.10 9.64 30.92 0.30 -10.80 16 8 H 0.09 2.75 6.86 -52.48 -0.36 2.39 16 9 O -0.21 -5.83 9.62 -20.70 -0.20 -6.03 16 10 C 0.40 9.42 7.20 36.01 0.26 9.68 16 11 O -0.55 -14.59 15.22 -19.05 -0.29 -14.88 16 12 C -0.07 -1.15 2.59 -91.73 -0.24 -1.38 16 13 C -0.13 -1.80 5.30 -26.61 -0.14 -1.94 16 14 C 0.10 1.04 5.17 -3.71 -0.02 1.02 16 15 N -0.60 -7.22 2.97 -173.99 -0.52 -7.73 16 16 C 0.56 7.50 7.04 -12.46 -0.09 7.41 16 17 O -0.53 -8.84 15.96 5.28 0.08 -8.75 16 18 C -0.17 -1.86 4.90 -104.91 -0.51 -2.38 16 19 C -0.03 -0.22 7.48 -39.20 -0.29 -0.51 16 20 C -0.17 -1.10 10.01 -39.57 -0.40 -1.50 16 21 C 0.15 1.20 7.30 -39.29 -0.29 0.91 16 22 F -0.13 -1.05 17.26 2.25 0.04 -1.01 16 23 C -0.20 -1.71 9.99 -39.50 -0.39 -2.11 16 24 C 0.18 2.00 7.25 -38.98 -0.28 1.72 16 25 F -0.11 -1.51 16.44 2.25 0.04 -1.47 16 26 C 0.11 1.38 6.44 -3.72 -0.02 1.35 16 27 C -0.11 -1.71 4.65 -26.61 -0.12 -1.84 16 28 H 0.27 7.05 8.31 -40.82 -0.34 6.72 16 29 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.10 1.49 8.08 -51.93 -0.42 1.07 16 32 H 0.09 0.79 5.03 -51.93 -0.26 0.53 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.15 0.80 7.18 -52.49 -0.38 0.42 16 35 H 0.15 0.63 8.06 -52.48 -0.42 0.20 16 36 H 0.16 1.07 8.06 -52.48 -0.42 0.64 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.10 1.24 6.99 -51.93 -0.36 0.88 16 39 H 0.09 1.28 8.07 -51.93 -0.42 0.87 16 40 H 0.07 1.27 8.13 -51.93 -0.42 0.84 16 LS Contribution 349.80 15.07 5.27 5.27 Total: -1.00 -35.05 349.80 -6.47 -41.52 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -4.29 Total: 0.22 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -2.34 Total: 0.73 kcal Atomic # 7 Polarization: -31.82 SS G_CDS: 0.24 Total: -31.58 kcal Atomic # 8 Polarization: -29.26 SS G_CDS: -0.40 Total: -29.67 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.08 Total: -2.48 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -35.05 -6.47 -41.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000022447473.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.530 kcal (2) G-P(sol) polarization free energy of solvation -35.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds