Wall clock time and date at job start Tue Mar 31 2020 22:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31438 * 1 3 3 Si 1.86807 * 119.99527 * 2 1 4 4 H 1.48500 * 109.46927 * 239.99900 * 3 2 1 5 5 H 1.48498 * 109.47225 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46821 * 120.00200 * 3 2 1 7 7 C 1.38752 * 120.00210 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99790 * 180.02562 * 7 2 1 9 9 O 1.34912 * 119.99923 * 0.02562 * 7 2 1 10 10 C 1.34318 * 116.99963 * 179.97438 * 9 7 2 11 11 O 1.21205 * 120.00135 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99985 * 179.97438 * 10 9 7 13 13 C 1.53034 * 109.45736 * 59.93582 * 12 10 9 14 14 C 1.53199 * 109.31182 * 181.38215 * 13 12 10 15 15 N 1.46926 * 108.77448 * 305.36747 * 14 13 12 16 16 C 1.34772 * 120.62473 * 233.58438 * 15 14 13 17 17 O 1.21597 * 119.99779 * 174.83984 * 16 15 14 18 18 C 1.47567 * 120.00826 * 354.83982 * 16 15 14 19 19 C 1.39732 * 120.13598 * 313.12088 * 18 16 15 20 20 C 1.37747 * 119.90102 * 179.72222 * 19 18 16 21 21 C 1.38759 * 120.18872 * 0.57279 * 20 19 18 22 22 F 1.35105 * 119.85324 * 179.72817 * 21 20 19 23 23 C 1.38497 * 120.28847 * 359.69806 * 21 20 19 24 24 C 1.38192 * 120.08797 * 0.02562 * 23 21 20 25 25 F 1.35107 * 120.09065 * 180.02562 * 24 23 21 26 26 C 1.46920 * 118.73953 * 53.60793 * 15 14 13 27 27 C 1.53043 * 109.45877 * 180.02562 * 12 10 9 28 28 H 0.96997 * 120.00400 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.44681 * 299.97060 * 12 10 9 30 30 H 1.09003 * 109.49800 * 61.43479 * 13 12 10 31 31 H 1.09002 * 109.50009 * 301.33478 * 13 12 10 32 32 H 1.08998 * 109.58531 * 185.57962 * 14 13 12 33 33 H 1.08998 * 109.58085 * 65.15465 * 14 13 12 34 34 H 1.08001 * 120.05493 * 359.97438 * 19 18 16 35 35 H 1.08004 * 119.90410 * 180.27654 * 20 19 18 36 36 H 1.08003 * 119.95318 * 180.02562 * 23 21 20 37 37 H 1.08997 * 109.58894 * 66.17795 * 26 15 14 38 38 H 1.08996 * 109.58777 * 186.46122 * 26 15 14 39 39 H 1.09001 * 109.49914 * 58.66398 * 27 12 10 40 40 H 1.08998 * 109.52158 * 298.58295 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6179 0.0000 4 1 3.1020 1.6965 -1.2125 5 1 1.2832 2.7465 -0.0006 6 1 3.1021 1.6965 1.2125 7 6 2.0082 -1.2016 0.0005 8 1 3.0882 -1.2015 0.0010 9 8 1.3337 -2.3700 0.0005 10 6 2.0652 -3.4965 0.0005 11 8 3.2756 -3.4330 0.0010 12 6 1.3811 -4.8392 0.0011 13 6 0.5051 -4.9656 -1.2473 14 6 -0.2154 -6.3174 -1.2260 15 7 0.7846 -7.3840 -1.0799 16 6 0.8271 -8.4095 -1.9533 17 8 1.7163 -9.2355 -1.8782 18 6 -0.2053 -8.5302 -3.0007 19 6 -1.5562 -8.3853 -2.6742 20 6 -2.5156 -8.4931 -3.6568 21 6 -2.1451 -8.7570 -4.9677 22 9 -3.0920 -8.8669 -5.9251 23 6 -0.8088 -8.9077 -5.2991 24 6 0.1637 -8.7961 -4.3237 25 9 1.4674 -8.9425 -4.6470 26 6 1.7368 -7.3114 0.0366 27 6 2.4354 -5.9486 0.0016 28 1 -0.4850 0.8400 -0.0004 29 1 0.7592 -4.9293 0.8918 30 1 1.1298 -4.9004 -2.1382 31 1 -0.2306 -4.1614 -1.2586 32 1 -0.7624 -6.4546 -2.1588 33 1 -0.9085 -6.3487 -0.3854 34 1 -1.8476 -8.1850 -1.6538 35 1 -3.5594 -8.3767 -3.4053 36 1 -0.5265 -9.1125 -6.3213 37 1 1.2028 -7.4239 0.9801 38 1 2.4763 -8.1061 -0.0617 39 1 3.0734 -5.8438 0.8792 40 1 3.0426 -5.8744 -0.9005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000022447473.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:29 Heat of formation + Delta-G solvation = -197.500548 kcal Electronic energy + Delta-G solvation = -29085.586029 eV Core-core repulsion = 24500.898616 eV Total energy + Delta-G solvation = -4584.687413 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.19386 -50.11006 -41.79412 -41.00704 -39.39813 -38.43453 -37.16271 -34.43784 -34.18575 -32.74728 -31.90633 -31.41433 -28.26218 -26.88724 -25.01924 -24.63547 -23.87519 -23.02478 -21.55498 -20.45361 -19.86062 -19.27553 -18.87799 -18.41962 -18.23868 -17.44087 -17.06480 -16.84204 -16.78881 -16.45558 -16.39546 -16.23199 -16.11110 -15.81071 -15.49626 -15.13261 -14.97756 -14.70994 -14.55233 -14.12238 -13.96623 -13.67243 -13.57039 -13.43747 -13.11412 -12.97887 -12.88832 -12.54066 -12.39567 -12.28099 -12.18850 -12.06546 -11.86623 -11.66252 -11.17443 -10.94700 -10.68601 -10.19888 -9.97430 -9.75927 -8.53576 -6.32560 -0.51634 -0.11840 1.31134 1.34136 1.39017 1.48536 1.64341 1.78240 2.11066 2.27862 2.67785 2.73603 2.97307 3.14874 3.24638 3.47689 3.64961 3.69255 3.80641 3.93080 4.01551 4.04653 4.27153 4.29144 4.46692 4.56740 4.60855 4.64533 4.72388 4.74662 4.77109 4.85496 4.88426 4.93531 4.98045 5.11439 5.20701 5.24482 5.41442 5.56964 5.84054 6.18695 6.68325 6.90935 6.92128 7.77437 8.66117 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.014504 B = 0.002761 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.102017 B =10137.556751 C =11178.381915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.002 3.998 3 Si 1.010 2.990 4 H -0.266 1.266 5 H -0.257 1.257 6 H -0.264 1.264 7 C -0.424 4.424 8 H 0.075 0.925 9 O -0.236 6.236 10 C 0.396 3.604 11 O -0.589 6.589 12 C -0.061 4.061 13 C -0.121 4.121 14 C 0.108 3.892 15 N -0.599 5.599 16 C 0.561 3.439 17 O -0.571 6.571 18 C -0.190 4.190 19 C -0.019 4.019 20 C -0.149 4.149 21 C 0.150 3.850 22 F -0.127 7.127 23 C -0.197 4.197 24 C 0.152 3.848 25 F -0.137 7.137 26 C 0.121 3.879 27 C -0.107 4.107 28 H 0.279 0.721 29 H 0.128 0.872 30 H 0.047 0.953 31 H 0.091 0.909 32 H 0.111 0.889 33 H 0.121 0.879 34 H 0.184 0.816 35 H 0.186 0.814 36 H 0.166 0.834 37 H 0.110 0.890 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.370 -17.603 -5.591 21.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.199 4.199 3 Si 0.829 3.171 4 H -0.191 1.191 5 H -0.181 1.181 6 H -0.188 1.188 7 C -0.500 4.500 8 H 0.093 0.907 9 O -0.144 6.144 10 C 0.244 3.756 11 O -0.487 6.487 12 C -0.080 4.080 13 C -0.160 4.160 14 C -0.013 4.013 15 N -0.331 5.331 16 C 0.350 3.650 17 O -0.451 6.451 18 C -0.194 4.194 19 C -0.037 4.037 20 C -0.168 4.168 21 C 0.130 3.870 22 F -0.105 7.105 23 C -0.216 4.216 24 C 0.132 3.868 25 F -0.116 7.116 26 C 0.000 4.000 27 C -0.146 4.146 28 H 0.089 0.911 29 H 0.146 0.854 30 H 0.066 0.934 31 H 0.109 0.891 32 H 0.129 0.871 33 H 0.139 0.861 34 H 0.201 0.799 35 H 0.204 0.796 36 H 0.183 0.817 37 H 0.128 0.872 38 H 0.106 0.894 39 H 0.100 0.900 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -10.775 -17.858 -5.585 21.592 hybrid contribution 1.307 0.925 -0.515 1.682 sum -9.467 -16.933 -6.100 20.337 Atomic orbital electron populations 1.70026 1.07290 1.29380 1.46575 1.26376 0.96872 1.01918 0.94731 0.84794 0.77758 0.74951 0.79567 1.19059 1.18109 1.18835 1.21292 0.91959 0.81515 1.55226 0.90733 1.83879 1.39991 1.13925 1.76589 1.24556 0.86624 0.88478 0.75977 1.90525 1.17669 1.88714 1.51826 1.20938 0.97866 0.86470 1.02741 1.21864 0.99181 0.99522 0.95414 1.22263 0.89991 0.83038 1.05988 1.48157 1.34287 1.22873 1.27792 1.18321 0.84339 0.81302 0.81052 1.90802 1.37529 1.43464 1.73329 1.20034 0.96227 1.10898 0.92215 1.21438 0.88027 0.92207 1.02076 1.21534 1.03279 1.02266 0.89679 1.17636 0.84587 0.98089 0.86669 1.91571 1.63033 1.92893 1.63049 1.21091 0.91204 1.07814 1.01505 1.17518 0.78235 0.98672 0.92418 1.91551 1.34221 1.92589 1.93210 1.21695 0.92676 0.96059 0.89619 1.21683 0.96864 0.93050 1.02957 0.91148 0.85402 0.93391 0.89059 0.87062 0.86139 0.79906 0.79647 0.81677 0.87210 0.89403 0.89967 0.93704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.88 13.67 21.62 0.30 -50.58 16 2 C 0.00 0.11 5.49 84.87 0.47 0.58 16 3 Si 1.01 42.79 29.55 68.60 2.03 44.82 16 4 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 5 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 6 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 7 C -0.42 -25.37 9.64 67.94 0.66 -24.72 16 8 H 0.07 4.61 6.86 -2.91 -0.02 4.59 16 9 O -0.24 -13.32 9.62 14.89 0.14 -13.18 16 10 C 0.40 19.21 7.20 71.24 0.51 19.72 16 11 O -0.59 -32.39 15.22 20.79 0.32 -32.08 16 12 C -0.06 -1.99 2.59 -11.51 -0.03 -2.02 16 13 C -0.12 -3.36 5.30 30.67 0.16 -3.20 16 14 C 0.11 1.88 5.17 86.36 0.45 2.32 16 15 N -0.60 -13.18 2.97 -822.64 -2.45 -15.62 16 16 C 0.56 14.46 7.04 86.71 0.61 15.07 16 17 O -0.57 -19.50 15.96 -4.02 -0.06 -19.56 16 18 C -0.19 -3.77 4.90 -20.05 -0.10 -3.87 16 19 C -0.02 -0.21 7.48 22.51 0.17 -0.04 16 20 C -0.15 -1.32 10.01 22.28 0.22 -1.09 16 21 C 0.15 1.97 7.30 22.46 0.16 2.13 16 22 F -0.13 -1.78 17.26 44.97 0.78 -1.00 16 23 C -0.20 -3.19 9.99 22.32 0.22 -2.96 16 24 C 0.15 3.32 7.25 22.66 0.16 3.49 16 25 F -0.14 -3.87 16.44 44.97 0.74 -3.13 16 26 C 0.12 2.74 6.44 86.36 0.56 3.30 16 27 C -0.11 -3.20 4.65 30.67 0.14 -3.06 16 28 H 0.28 14.40 8.31 -92.71 -0.77 13.63 16 29 H 0.13 3.44 8.14 -2.39 -0.02 3.42 16 30 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.09 2.69 8.08 -2.39 -0.02 2.67 16 32 H 0.11 1.52 5.03 -2.39 -0.01 1.51 16 33 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.18 0.86 7.18 -2.91 -0.02 0.84 16 35 H 0.19 0.43 8.06 -2.91 -0.02 0.41 16 36 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 37 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.09 2.22 6.99 -2.39 -0.02 2.20 16 39 H 0.08 2.49 8.07 -2.39 -0.02 2.47 16 40 H 0.04 1.59 8.13 -2.39 -0.02 1.57 16 Total: -1.00 -81.66 349.80 7.25 -74.41 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: 1.10 Total: 10.27 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: 4.37 Total: 5.65 kcal Atomic # 7 Polarization: -64.06 SS G_CDS: -2.15 Total: -66.21 kcal Atomic # 8 Polarization: -65.21 SS G_CDS: 0.40 Total: -64.82 kcal Atomic # 9 Polarization: -5.65 SS G_CDS: 1.52 Total: -4.13 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -81.66 7.25 -74.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000022447473.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.094 kcal (2) G-P(sol) polarization free energy of solvation -81.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds