Wall clock time and date at job start Tue Mar 31 2020 22:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35683 * 120.48332 * 2 1 4 4 C 1.40167 * 119.26906 * 179.78266 * 3 2 1 5 5 N 1.31260 * 120.35900 * 0.49677 * 4 3 2 6 6 C 1.33981 * 120.87933 * 359.74981 * 5 4 3 7 7 N 1.32500 * 132.34258 * 180.02562 * 6 5 4 8 8 C 1.33476 * 109.75600 * 179.97438 * 7 6 5 9 9 C 1.48092 * 125.32540 * 180.02562 * 8 7 6 10 10 O 1.21532 * 119.99953 * 179.97438 * 9 8 7 11 11 N 1.34769 * 120.00241 * 359.97438 * 9 8 7 12 12 C 1.39840 * 120.00488 * 174.78701 * 11 9 8 13 13 C 1.38982 * 120.03334 * 326.13886 * 12 11 9 14 14 C 1.38155 * 120.06203 * 179.71567 * 13 12 11 15 15 C 1.38175 * 120.13777 * 0.55757 * 14 13 12 16 16 C 1.38905 * 120.07860 * 359.72005 * 15 14 13 17 17 O 1.35747 * 120.03389 * 179.97438 * 16 15 14 18 18 C 1.34834 * 116.99789 * 185.92860 * 17 16 15 19 19 H 1.07992 * 120.00405 * 5.39634 * 18 17 16 20 20 C 1.38660 * 119.99686 * 185.40187 * 18 17 16 21 21 N 1.31560 * 119.99973 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99888 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47128 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47060 * 119.99738 * 22 20 18 25 25 H 1.48495 * 109.47346 * 239.99444 * 22 20 18 26 26 C 1.38733 * 120.04005 * 146.41117 * 12 11 9 27 27 N 1.32000 * 109.34812 * 359.97438 * 8 7 6 28 28 N 1.36162 * 120.48570 * 180.27282 * 2 1 3 29 29 H 1.09001 * 109.47591 * 269.72633 * 1 2 3 30 30 H 1.09002 * 109.46934 * 149.72316 * 1 2 3 31 31 H 1.09000 * 109.47268 * 29.72701 * 1 2 3 32 32 H 1.08000 * 120.36453 * 0.02562 * 3 2 1 33 33 H 1.08005 * 119.81986 * 180.26653 * 4 3 2 34 34 H 0.97010 * 120.00104 * 354.79271 * 11 9 8 35 35 H 1.08000 * 119.97224 * 359.97438 * 13 12 11 36 36 H 1.08003 * 119.93181 * 180.27472 * 14 13 12 37 37 H 1.08000 * 119.95799 * 179.74186 * 15 14 13 38 38 H 0.96996 * 119.99680 * 180.02562 * 21 20 18 39 39 H 1.08004 * 120.07086 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1693 0.0000 4 6 3.5966 1.1396 0.0046 5 7 4.2359 -0.0068 -0.0009 6 6 3.5665 -1.1674 -0.0060 7 7 3.9690 -2.4298 -0.0115 8 6 2.9092 -3.2412 -0.0146 9 6 2.9638 -4.7211 -0.0204 10 8 1.9344 -5.3671 -0.0223 11 7 4.1550 -5.3515 -0.0235 12 6 4.2090 -6.7449 0.0811 13 6 3.2673 -7.4221 0.8468 14 6 3.3166 -8.7992 0.9458 15 6 4.3084 -9.5065 0.2937 16 6 5.2560 -8.8352 -0.4684 17 8 6.2303 -9.5309 -1.1082 18 6 7.1884 -8.8131 -1.7286 19 1 7.2072 -7.7379 -1.6292 20 6 8.1494 -9.4554 -2.4944 21 7 8.1268 -10.7653 -2.6152 22 14 9.4763 -8.4609 -3.3545 23 1 9.2812 -7.0181 -3.0622 24 1 10.8113 -8.8894 -2.8654 25 1 9.3909 -8.6846 -4.8200 26 6 5.2060 -7.4525 -0.5747 27 7 1.8048 -2.5182 -0.0105 28 7 2.1978 -1.1734 -0.0056 29 1 -0.3634 -0.0049 1.0276 30 1 -0.3633 -0.8875 -0.5181 31 1 -0.3634 0.8924 -0.5096 32 1 1.6692 2.1125 0.0004 33 1 4.1534 2.0650 0.0090 34 1 4.9750 -4.8386 -0.0982 35 1 2.4937 -6.8716 1.3615 36 1 2.5811 -9.3236 1.5377 37 1 4.3467 -10.5827 0.3765 38 1 8.7993 -11.2146 -3.1506 39 1 5.9414 -6.9283 -1.1671 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049294135.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:32 Heat of formation + Delta-G solvation = 115.998027 kcal Electronic energy + Delta-G solvation = -27167.288626 eV Core-core repulsion = 23079.177468 eV Total energy + Delta-G solvation = -4088.111157 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.40350 -40.38452 -39.25832 -38.49917 -36.45664 -35.78785 -34.38214 -32.38844 -32.17973 -31.42518 -29.49731 -29.11521 -28.67534 -25.87936 -25.18832 -24.69016 -22.78983 -21.84787 -21.60813 -20.18948 -19.10165 -18.68714 -17.97719 -17.69627 -17.25554 -17.00826 -16.14963 -15.59367 -15.29251 -14.98835 -14.75047 -14.54951 -14.26597 -14.03215 -13.95907 -13.89022 -13.57676 -13.19679 -13.15036 -13.04953 -12.97949 -12.41006 -12.02462 -11.77216 -11.57200 -11.23045 -10.99110 -10.81087 -10.74957 -10.55429 -10.41102 -10.27719 -10.21376 -9.74209 -9.46233 -9.26779 -8.80003 -7.77427 -7.18033 -6.43381 -4.02836 -0.19583 0.11392 1.20957 1.34364 2.10216 2.37016 2.56034 2.76360 2.88939 3.13956 3.16428 3.21401 3.21826 3.50457 3.67253 3.98607 4.07306 4.25935 4.51632 4.59268 4.64620 4.66959 4.73777 5.10764 5.11572 5.27617 5.33265 5.48496 5.54000 5.66258 5.71284 5.96958 6.01533 6.19047 6.25182 6.59276 6.83772 6.91215 6.91655 7.10868 7.27440 7.29566 7.41904 7.61158 7.75242 8.00311 8.07836 9.02293 9.71375 10.74561 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.014300 B = 0.002516 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.540114 B =11124.495485 C =12803.565132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.205 3.795 3 C -0.228 4.228 4 C 0.213 3.787 5 N -0.453 5.453 6 C 0.447 3.553 7 N -0.498 5.498 8 C 0.246 3.754 9 C 0.608 3.392 10 O -0.485 6.485 11 N -0.639 5.639 12 C 0.177 3.823 13 C -0.205 4.205 14 C -0.062 4.062 15 C -0.196 4.196 16 C 0.168 3.832 17 O -0.174 6.174 18 C -0.392 4.392 19 H 0.092 0.908 20 C 0.040 3.960 21 N -0.861 5.861 22 Si 0.940 3.060 23 H -0.266 1.266 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.248 4.248 27 N -0.265 5.265 28 N -0.328 5.328 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.176 0.824 33 H 0.194 0.806 34 H 0.420 0.580 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.269 0.731 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.663 27.302 5.869 30.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.087 3.913 3 C -0.253 4.253 4 C 0.027 3.973 5 N -0.168 5.168 6 C 0.086 3.914 7 N -0.232 5.232 8 C -0.038 4.038 9 C 0.388 3.612 10 O -0.354 6.354 11 N -0.284 5.284 12 C 0.085 3.915 13 C -0.226 4.226 14 C -0.081 4.081 15 C -0.215 4.215 16 C 0.114 3.886 17 O -0.077 6.077 18 C -0.468 4.468 19 H 0.109 0.891 20 C -0.165 4.165 21 N -0.496 5.496 22 Si 0.765 3.235 23 H -0.190 1.190 24 H -0.201 1.201 25 H -0.202 1.202 26 C -0.270 4.270 27 N -0.099 5.099 28 N -0.109 5.109 29 H 0.117 0.883 30 H 0.111 0.889 31 H 0.118 0.882 32 H 0.194 0.806 33 H 0.211 0.789 34 H 0.257 0.743 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.079 0.921 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.651 25.543 5.721 29.072 hybrid contribution 0.342 1.336 -0.567 1.491 sum -12.309 26.879 5.154 30.009 Atomic orbital electron populations 1.21115 0.86062 1.05838 1.05187 1.20984 0.96882 0.81812 0.91587 1.21861 0.95758 0.97942 1.09690 1.23671 0.91779 0.95812 0.86055 1.68101 1.36113 0.94980 1.17562 1.22713 0.78316 0.93644 0.96683 1.70861 1.28160 0.96451 1.27733 1.24152 0.86008 0.96602 0.97041 1.16263 0.84640 0.81923 0.78352 1.90883 1.33314 1.64359 1.46890 1.43098 1.08459 1.06573 1.70283 1.17349 0.97323 0.79970 0.96875 1.20541 1.02403 0.94507 1.05133 1.20516 0.96707 0.93088 0.97744 1.20279 0.97707 0.99881 1.03658 1.19064 0.88796 0.89569 0.91210 1.84024 1.30807 1.33949 1.58959 1.21347 1.04406 0.91888 1.29151 0.89070 1.25283 0.98385 0.96085 0.96710 1.70048 1.34407 1.07515 1.37666 0.85661 0.79674 0.79280 0.78929 1.19028 1.20120 1.20185 1.20827 1.03892 0.94389 1.07860 1.78899 1.19132 0.82931 1.28933 1.49053 1.09212 1.06341 1.46313 0.88318 0.88910 0.88183 0.80619 0.78911 0.74297 0.86317 0.86394 0.86200 0.92063 0.84915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.47 10.13 36.01 0.36 -0.10 16 2 C 0.21 1.37 6.86 -81.58 -0.56 0.81 16 3 C -0.23 -0.74 9.72 -39.77 -0.39 -1.13 16 4 C 0.21 1.01 11.27 -17.07 -0.19 0.82 16 5 N -0.45 -4.72 10.48 -13.79 -0.14 -4.87 16 6 C 0.45 5.96 8.99 -323.04 -2.90 3.05 16 7 N -0.50 -7.78 10.90 -12.24 -0.13 -7.91 16 8 C 0.25 3.98 7.92 -156.79 -1.24 2.74 16 9 C 0.61 10.78 7.57 -12.22 -0.09 10.69 16 10 O -0.48 -9.69 14.79 5.34 0.08 -9.61 16 11 N -0.64 -11.15 5.33 -10.67 -0.06 -11.21 16 12 C 0.18 3.56 6.26 -83.75 -0.52 3.03 16 13 C -0.21 -4.03 8.65 -39.34 -0.34 -4.37 16 14 C -0.06 -1.17 10.03 -39.64 -0.40 -1.57 16 15 C -0.20 -4.21 9.99 -39.36 -0.39 -4.60 16 16 C 0.17 4.11 6.64 -39.14 -0.26 3.85 16 17 O -0.17 -4.97 9.76 0.05 0.00 -4.97 16 18 C -0.39 -10.96 9.44 30.89 0.29 -10.67 16 19 H 0.09 2.37 5.30 -52.49 -0.28 2.09 16 20 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 21 N -0.86 -25.36 13.67 55.48 0.76 -24.60 16 22 Si 0.94 20.72 29.55 -169.99 -5.02 15.70 16 23 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 24 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 25 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 26 C -0.25 -5.52 9.04 -39.20 -0.35 -5.88 16 27 N -0.27 -3.97 12.67 32.02 0.41 -3.56 16 28 N -0.33 -3.86 3.91 -10.07 -0.04 -3.90 16 29 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.10 0.05 8.09 -51.93 -0.42 -0.37 16 32 H 0.18 -0.23 8.06 -52.49 -0.42 -0.65 16 33 H 0.19 0.01 8.06 -52.48 -0.42 -0.41 16 34 H 0.42 6.55 8.50 -40.82 -0.35 6.20 16 35 H 0.12 2.26 6.45 -52.49 -0.34 1.92 16 36 H 0.12 1.84 8.06 -52.48 -0.42 1.42 16 37 H 0.12 2.45 8.06 -52.49 -0.42 2.02 16 38 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.13 2.92 5.72 -52.48 -0.30 2.62 16 LS Contribution 351.24 15.07 5.29 5.29 Total: -1.00 -37.29 351.24 -9.30 -46.59 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -3.35 Total: 5.39 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: -7.08 Total: -2.33 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: 0.79 Total: -56.05 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: 0.08 Total: -14.59 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -37.29 -9.30 -46.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049294135.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.591 kcal (2) G-P(sol) polarization free energy of solvation -37.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds