Wall clock time and date at job start Tue Mar 31 2020 22:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35683 * 120.48332 * 2 1 4 4 C 1.40167 * 119.26906 * 179.78266 * 3 2 1 5 5 N 1.31260 * 120.35900 * 0.49677 * 4 3 2 6 6 C 1.33981 * 120.87933 * 359.74981 * 5 4 3 7 7 N 1.32500 * 132.34258 * 180.02562 * 6 5 4 8 8 C 1.33476 * 109.75600 * 179.97438 * 7 6 5 9 9 C 1.48092 * 125.32540 * 180.02562 * 8 7 6 10 10 O 1.21532 * 119.99953 * 179.97438 * 9 8 7 11 11 N 1.34769 * 120.00241 * 359.97438 * 9 8 7 12 12 C 1.39840 * 120.00488 * 174.78701 * 11 9 8 13 13 C 1.38982 * 120.03334 * 326.13886 * 12 11 9 14 14 C 1.38155 * 120.06203 * 179.71567 * 13 12 11 15 15 C 1.38175 * 120.13777 * 0.55757 * 14 13 12 16 16 C 1.38905 * 120.07860 * 359.72005 * 15 14 13 17 17 O 1.35747 * 120.03389 * 179.97438 * 16 15 14 18 18 C 1.34834 * 116.99789 * 185.92860 * 17 16 15 19 19 H 1.07992 * 120.00405 * 5.39634 * 18 17 16 20 20 C 1.38660 * 119.99686 * 185.40187 * 18 17 16 21 21 N 1.31560 * 119.99973 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99888 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47128 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47060 * 119.99738 * 22 20 18 25 25 H 1.48495 * 109.47346 * 239.99444 * 22 20 18 26 26 C 1.38733 * 120.04005 * 146.41117 * 12 11 9 27 27 N 1.32000 * 109.34812 * 359.97438 * 8 7 6 28 28 N 1.36162 * 120.48570 * 180.27282 * 2 1 3 29 29 H 1.09001 * 109.47591 * 269.72633 * 1 2 3 30 30 H 1.09002 * 109.46934 * 149.72316 * 1 2 3 31 31 H 1.09000 * 109.47268 * 29.72701 * 1 2 3 32 32 H 1.08000 * 120.36453 * 0.02562 * 3 2 1 33 33 H 1.08005 * 119.81986 * 180.26653 * 4 3 2 34 34 H 0.97010 * 120.00104 * 354.79271 * 11 9 8 35 35 H 1.08000 * 119.97224 * 359.97438 * 13 12 11 36 36 H 1.08003 * 119.93181 * 180.27472 * 14 13 12 37 37 H 1.08000 * 119.95799 * 179.74186 * 15 14 13 38 38 H 0.96996 * 119.99680 * 180.02562 * 21 20 18 39 39 H 1.08004 * 120.07086 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1693 0.0000 4 6 3.5966 1.1396 0.0046 5 7 4.2359 -0.0068 -0.0009 6 6 3.5665 -1.1674 -0.0060 7 7 3.9690 -2.4298 -0.0115 8 6 2.9092 -3.2412 -0.0146 9 6 2.9638 -4.7211 -0.0204 10 8 1.9344 -5.3671 -0.0223 11 7 4.1550 -5.3515 -0.0235 12 6 4.2090 -6.7449 0.0811 13 6 3.2673 -7.4221 0.8468 14 6 3.3166 -8.7992 0.9458 15 6 4.3084 -9.5065 0.2937 16 6 5.2560 -8.8352 -0.4684 17 8 6.2303 -9.5309 -1.1082 18 6 7.1884 -8.8131 -1.7286 19 1 7.2072 -7.7379 -1.6292 20 6 8.1494 -9.4554 -2.4944 21 7 8.1268 -10.7653 -2.6152 22 14 9.4763 -8.4609 -3.3545 23 1 9.2812 -7.0181 -3.0622 24 1 10.8113 -8.8894 -2.8654 25 1 9.3909 -8.6846 -4.8200 26 6 5.2060 -7.4525 -0.5747 27 7 1.8048 -2.5182 -0.0105 28 7 2.1978 -1.1734 -0.0056 29 1 -0.3634 -0.0049 1.0276 30 1 -0.3633 -0.8875 -0.5181 31 1 -0.3634 0.8924 -0.5096 32 1 1.6692 2.1125 0.0004 33 1 4.1534 2.0650 0.0090 34 1 4.9750 -4.8386 -0.0982 35 1 2.4937 -6.8716 1.3615 36 1 2.5811 -9.3236 1.5377 37 1 4.3467 -10.5827 0.3765 38 1 8.7993 -11.2146 -3.1506 39 1 5.9414 -6.9283 -1.1671 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049294135.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:31 Heat of formation + Delta-G solvation = 90.822501 kcal Electronic energy + Delta-G solvation = -27168.380318 eV Core-core repulsion = 23079.177468 eV Total energy + Delta-G solvation = -4089.202850 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.23844 -41.80385 -40.54764 -39.79224 -38.19992 -36.43622 -35.90823 -34.25711 -33.10346 -32.30598 -31.13488 -30.38291 -29.53971 -27.47966 -26.75951 -25.34209 -23.83374 -23.55239 -22.81542 -21.59801 -20.15410 -19.74567 -19.63342 -18.96502 -18.37569 -18.11684 -17.23533 -16.91983 -16.68680 -16.51884 -16.08549 -15.87229 -15.56035 -15.49447 -15.22072 -14.65726 -14.59749 -14.43353 -14.26512 -13.94117 -13.86663 -13.61223 -13.36717 -13.32052 -12.90349 -12.73541 -12.66914 -12.52641 -12.10504 -11.83056 -11.71915 -11.44685 -11.29924 -11.14546 -11.03201 -10.77048 -9.99217 -9.45918 -8.96940 -8.47738 -6.16096 -0.86220 -0.56988 0.14956 0.43608 0.60200 0.71566 1.35813 1.42784 1.44315 1.53735 1.77788 2.03732 2.17269 2.24810 2.71250 2.79897 3.09870 3.13989 3.23357 3.45536 3.78811 4.03695 4.08278 4.23120 4.26547 4.35671 4.36721 4.46261 4.53239 4.54629 4.56779 4.63679 4.94460 4.97452 5.09820 5.10663 5.16255 5.27006 5.32172 5.59237 5.62435 5.96175 6.00255 6.10490 6.19946 6.48172 6.65531 6.96882 7.74549 8.75178 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.014300 B = 0.002516 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.540114 B =11124.495485 C =12803.565132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.169 3.831 3 C -0.185 4.185 4 C 0.225 3.775 5 N -0.490 5.490 6 C 0.430 3.570 7 N -0.532 5.532 8 C 0.228 3.772 9 C 0.615 3.385 10 O -0.513 6.513 11 N -0.634 5.634 12 C 0.180 3.820 13 C -0.197 4.197 14 C -0.046 4.046 15 C -0.203 4.203 16 C 0.136 3.864 17 O -0.221 6.221 18 C -0.413 4.413 19 H 0.101 0.899 20 C -0.020 4.020 21 N -0.917 5.917 22 Si 1.016 2.984 23 H -0.253 1.253 24 H -0.266 1.266 25 H -0.269 1.269 26 C -0.253 4.253 27 N -0.287 5.287 28 N -0.328 5.328 29 H 0.107 0.893 30 H 0.065 0.935 31 H 0.142 0.858 32 H 0.238 0.762 33 H 0.248 0.752 34 H 0.427 0.573 35 H 0.131 0.869 36 H 0.162 0.838 37 H 0.127 0.873 38 H 0.273 0.727 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.012 32.507 6.495 35.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.053 3.947 3 C -0.208 4.208 4 C 0.043 3.957 5 N -0.207 5.207 6 C 0.071 3.929 7 N -0.268 5.268 8 C -0.056 4.056 9 C 0.397 3.603 10 O -0.385 6.385 11 N -0.279 5.279 12 C 0.087 3.913 13 C -0.218 4.218 14 C -0.065 4.065 15 C -0.223 4.223 16 C 0.085 3.915 17 O -0.127 6.127 18 C -0.489 4.489 19 H 0.118 0.882 20 C -0.218 4.218 21 N -0.555 5.555 22 Si 0.835 3.165 23 H -0.176 1.176 24 H -0.191 1.191 25 H -0.194 1.194 26 C -0.274 4.274 27 N -0.123 5.123 28 N -0.109 5.109 29 H 0.126 0.874 30 H 0.084 0.916 31 H 0.160 0.840 32 H 0.254 0.746 33 H 0.264 0.736 34 H 0.266 0.734 35 H 0.149 0.851 36 H 0.179 0.821 37 H 0.145 0.855 38 H 0.082 0.918 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -14.046 30.854 6.378 34.496 hybrid contribution 0.469 0.157 -0.597 0.775 sum -13.577 31.011 5.781 34.343 Atomic orbital electron populations 1.21236 0.84071 1.06518 1.05930 1.21990 0.98660 0.81035 0.92986 1.22661 0.95153 0.98716 1.04290 1.24794 0.93158 0.95644 0.82092 1.68243 1.36999 0.95397 1.20107 1.22888 0.79091 0.93905 0.97046 1.70680 1.28732 0.97923 1.29441 1.23534 0.86927 0.95607 0.99529 1.16411 0.83930 0.82875 0.77099 1.90840 1.34024 1.65427 1.48181 1.43020 1.09132 1.05595 1.70186 1.17393 0.96601 0.81204 0.96140 1.20871 1.01869 0.95044 1.03980 1.20941 0.96169 0.92817 0.96549 1.20550 0.97704 1.00535 1.03468 1.19575 0.89260 0.90683 0.92003 1.83988 1.32384 1.35342 1.61028 1.21823 1.05047 0.92539 1.29508 0.88182 1.26544 1.00731 0.97297 0.97200 1.70181 1.36121 1.09582 1.39572 0.84564 0.76245 0.78080 0.77568 1.17597 1.19119 1.19447 1.20811 1.04520 0.93862 1.08245 1.78697 1.19234 0.84808 1.29544 1.49103 1.09307 1.06280 1.46257 0.87428 0.91650 0.84016 0.74579 0.73650 0.73370 0.85113 0.82094 0.85532 0.91758 0.85396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.53 10.13 71.24 0.72 0.19 16 2 C 0.17 1.73 6.86 41.29 0.28 2.01 16 3 C -0.18 -0.15 9.72 22.15 0.22 0.07 16 4 C 0.23 1.04 11.27 85.25 0.96 2.00 16 5 N -0.49 -9.21 10.48 -197.54 -2.07 -11.28 16 6 C 0.43 11.32 8.99 261.57 2.35 13.67 16 7 N -0.53 -17.17 10.90 -192.64 -2.10 -19.27 16 8 C 0.23 7.66 7.92 137.38 1.09 8.74 16 9 C 0.61 22.50 7.57 86.86 0.66 23.16 16 10 O -0.51 -20.93 14.79 -3.82 -0.06 -20.98 16 11 N -0.63 -22.78 5.33 -305.95 -1.63 -24.41 16 12 C 0.18 7.34 6.26 38.16 0.24 7.58 16 13 C -0.20 -7.60 8.65 22.43 0.19 -7.41 16 14 C -0.05 -1.70 10.03 22.23 0.22 -1.48 16 15 C -0.20 -8.85 9.99 22.41 0.22 -8.63 16 16 C 0.14 6.96 6.64 22.56 0.15 7.11 16 17 O -0.22 -13.39 9.76 -22.74 -0.22 -13.61 16 18 C -0.41 -24.27 9.44 67.92 0.64 -23.62 16 19 H 0.10 5.44 5.30 -2.91 -0.02 5.42 16 20 C -0.02 -1.13 5.49 84.83 0.47 -0.66 16 21 N -0.92 -56.51 13.67 21.62 0.30 -56.22 16 22 Si 1.02 43.57 29.55 68.60 2.03 45.60 16 23 H -0.25 -10.10 7.11 99.48 0.71 -9.40 16 24 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 25 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 26 C -0.25 -11.68 9.04 22.52 0.20 -11.48 16 27 N -0.29 -8.82 12.67 -52.62 -0.67 -9.49 16 28 N -0.33 -7.48 3.91 -185.77 -0.73 -8.21 16 29 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.14 -0.61 8.09 -2.39 -0.02 -0.63 16 32 H 0.24 -2.68 8.06 -2.91 -0.02 -2.70 16 33 H 0.25 -1.66 8.06 -2.91 -0.02 -1.69 16 34 H 0.43 13.94 8.50 -92.70 -0.79 13.15 16 35 H 0.13 4.82 6.45 -2.91 -0.02 4.81 16 36 H 0.16 4.51 8.06 -2.91 -0.02 4.49 16 37 H 0.13 5.27 8.06 -2.91 -0.02 5.24 16 38 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 39 H 0.13 5.93 5.72 -2.91 -0.02 5.91 16 Total: -1.00 -90.90 351.24 3.83 -87.07 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: 0.36 Total: 19.55 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: 8.62 Total: 11.24 kcal Atomic # 7 Polarization: -121.97 SS G_CDS: -6.90 Total: -128.87 kcal Atomic # 8 Polarization: -34.32 SS G_CDS: -0.28 Total: -34.60 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -90.90 3.83 -87.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049294135.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.893 kcal (2) G-P(sol) polarization free energy of solvation -90.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds