Wall clock time and date at job start Tue Mar 31 2020 22:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86795 * 119.99826 * 2 1 4 4 H 1.48495 * 109.47588 * 269.99987 * 3 2 1 5 5 H 1.48504 * 109.47010 * 30.00136 * 3 2 1 6 6 H 1.48506 * 109.47057 * 149.99680 * 3 2 1 7 7 C 1.38795 * 120.00213 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00316 * 180.02562 * 7 2 1 9 9 S 1.76200 * 119.99919 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00324 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47593 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99651 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00240 * 180.02562 * 11 10 9 14 14 C 1.46502 * 120.00006 * 174.87944 * 13 11 10 15 15 H 1.08996 * 109.47266 * 31.42355 * 14 13 11 16 16 C 1.50700 * 109.46974 * 151.42591 * 14 13 11 17 17 C 1.38241 * 119.97512 * 39.71838 * 16 14 13 18 18 C 1.38203 * 120.02409 * 179.76540 * 17 16 14 19 19 C 1.38462 * 119.97309 * 0.51427 * 18 17 16 20 20 F 1.35094 * 120.02389 * 179.76671 * 19 18 17 21 21 C 1.38458 * 119.94884 * 359.74268 * 19 18 17 22 22 C 1.38201 * 119.97308 * 0.02562 * 21 19 18 23 23 C 1.52999 * 109.46810 * 271.42433 * 14 13 11 24 24 H 1.09004 * 110.33004 * 296.86487 * 23 14 13 25 25 C 1.54475 * 110.37060 * 174.61399 * 23 14 13 26 26 C 1.54507 * 104.06129 * 217.18870 * 25 23 14 27 27 C 1.54471 * 104.06370 * 359.97438 * 26 25 23 28 28 O 1.44423 * 110.37375 * 59.11197 * 23 14 13 29 29 H 0.96995 * 120.00729 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.46654 * 59.99703 * 10 9 7 31 31 H 1.08997 * 109.47050 * 300.00292 * 10 9 7 32 32 H 0.96999 * 119.99420 * 354.87079 * 13 11 10 33 33 H 1.08005 * 119.98937 * 0.02562 * 17 16 14 34 34 H 1.08001 * 120.00933 * 180.25834 * 18 17 16 35 35 H 1.07991 * 120.01009 * 180.02562 * 21 19 18 36 36 H 1.07995 * 119.98703 * 179.97438 * 22 21 19 37 37 H 1.08998 * 110.51346 * 335.83630 * 25 23 14 38 38 H 1.09001 * 110.51086 * 98.40898 * 25 23 14 39 39 H 1.09004 * 110.51272 * 118.64683 * 26 25 23 40 40 H 1.09005 * 110.51432 * 241.21772 * 26 25 23 41 41 H 1.09006 * 110.37475 * 142.81247 * 27 26 25 42 42 H 1.09001 * 110.37197 * 265.03418 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1294 -2.7279 -0.0019 10 6 2.5159 -3.8914 -0.0013 11 6 1.9875 -5.3027 -0.0030 12 8 0.7912 -5.5023 -0.0040 13 7 2.8443 -6.3431 -0.0024 14 6 2.3343 -7.7120 0.1092 15 1 1.3517 -7.7729 -0.3587 16 6 3.2803 -8.6585 -0.5837 17 6 4.6459 -8.4751 -0.4719 18 6 5.5145 -9.3454 -1.1030 19 6 5.0162 -10.3951 -1.8561 20 9 5.8643 -11.2436 -2.4773 21 6 3.6482 -10.5746 -1.9717 22 6 2.7817 -9.7058 -1.3358 23 6 2.2205 -8.0949 1.5861 24 1 3.2045 -8.0923 2.0549 25 6 1.5588 -9.4831 1.7323 26 6 0.6777 -9.3480 2.9943 27 6 0.9119 -7.8944 3.4617 28 8 1.3334 -7.1863 2.2742 29 1 -0.4851 0.8399 -0.0004 30 1 3.1238 -3.7317 0.8892 31 1 3.1252 -3.7310 -0.8907 32 1 3.7985 -6.1855 -0.0760 33 1 5.0343 -7.6539 0.1122 34 1 6.5814 -9.2044 -1.0121 35 1 3.2585 -11.3931 -2.5585 36 1 1.7146 -9.8454 -1.4262 37 1 0.9448 -9.7072 0.8600 38 1 2.3161 -10.2542 1.8734 39 1 -0.3719 -9.5054 2.7460 40 1 0.9978 -10.0537 3.7609 41 1 -0.0126 -7.4671 3.8502 42 1 1.6929 -7.8612 4.2213 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055946139.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:12 Heat of formation + Delta-G solvation = -102.234873 kcal Electronic energy + Delta-G solvation = -26617.379462 eV Core-core repulsion = 22603.036254 eV Total energy + Delta-G solvation = -4014.343208 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.23006 -40.54060 -38.92718 -38.55022 -34.93699 -32.39848 -32.36898 -31.60781 -31.38514 -29.42014 -28.70896 -25.57252 -25.18295 -23.61074 -22.61622 -21.78798 -20.81126 -20.17378 -18.20144 -17.78335 -16.94064 -16.64247 -16.41663 -16.22668 -15.90599 -15.82053 -15.25626 -14.95656 -14.76846 -14.52617 -14.12410 -13.99068 -13.92217 -13.70757 -13.47877 -13.08078 -12.91908 -12.57365 -12.38631 -12.01415 -11.88730 -11.76645 -11.49177 -11.37687 -11.23784 -11.03277 -10.97962 -10.82266 -10.72750 -9.79917 -9.77077 -9.51307 -9.32292 -9.03020 -8.97615 -8.81024 -8.16811 -6.43510 -6.17507 -3.86916 0.69180 0.82870 3.00330 3.14377 3.24653 3.25578 3.31212 3.36550 3.71321 3.75615 3.89182 4.24639 4.31837 4.42532 4.45951 4.53095 4.62384 4.80234 4.85853 4.91897 5.00334 5.06336 5.17439 5.21137 5.31326 5.38226 5.47865 5.54800 5.59368 5.61749 5.71400 5.73081 5.74795 5.82768 5.84624 5.89474 5.97063 6.12290 6.20835 6.46849 6.62894 6.86943 7.63466 7.75697 8.39295 8.74500 9.27740 10.89897 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012836 B = 0.002814 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.918222 B = 9949.621747 C =11530.094046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.057 6.057 10 C -0.152 4.152 11 C 0.539 3.461 12 O -0.501 6.501 13 N -0.734 5.734 14 C 0.195 3.805 15 H 0.108 0.892 16 C -0.096 4.096 17 C -0.082 4.082 18 C -0.149 4.149 19 C 0.098 3.902 20 F -0.141 7.141 21 C -0.150 4.150 22 C -0.074 4.074 23 C 0.067 3.933 24 H 0.068 0.932 25 C -0.146 4.146 26 C -0.153 4.153 27 C 0.042 3.958 28 O -0.343 6.343 29 H 0.268 0.732 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.395 0.605 33 H 0.134 0.866 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.092 0.908 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.449 -24.503 1.844 26.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.744 3.256 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.090 0.910 9 S 0.170 5.830 10 C -0.302 4.302 11 C 0.325 3.675 12 O -0.373 6.373 13 N -0.389 5.389 14 C 0.089 3.911 15 H 0.126 0.874 16 C -0.097 4.097 17 C -0.100 4.100 18 C -0.168 4.168 19 C 0.079 3.921 20 F -0.119 7.119 21 C -0.169 4.169 22 C -0.092 4.092 23 C 0.007 3.993 24 H 0.086 0.914 25 C -0.184 4.184 26 C -0.191 4.191 27 C -0.035 4.035 28 O -0.261 6.261 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.230 0.770 33 H 0.152 0.848 34 H 0.155 0.845 35 H 0.155 0.845 36 H 0.155 0.845 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.110 0.890 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.224 -24.507 1.767 25.611 hybrid contribution 2.754 0.935 -0.017 2.908 sum 9.978 -23.572 1.750 25.657 Atomic orbital electron populations 1.70018 1.05929 1.27372 1.47020 1.24981 0.95010 0.98972 0.94633 0.86183 0.79422 0.81669 0.78309 1.20310 1.20790 1.19722 1.22881 0.94909 0.91803 1.58717 0.91014 1.85395 1.04889 0.96092 1.96668 1.23515 1.06528 0.95515 1.04680 1.20171 0.86557 0.85927 0.74830 1.90696 1.15147 1.85229 1.46230 1.45999 1.10083 1.04709 1.78095 1.19684 0.97630 0.80785 0.92968 0.87425 1.19896 0.94024 0.96802 0.98962 1.20852 0.92250 0.98540 0.98367 1.21135 1.01228 0.95169 0.99251 1.17762 0.87711 0.90478 0.96192 1.91506 1.70512 1.69245 1.80647 1.21145 0.91383 1.01789 1.02554 1.20919 1.00282 0.93193 0.94815 1.23377 0.94242 0.88755 0.92921 0.91448 1.22934 0.99356 0.97172 0.98939 1.22925 1.01053 0.97674 0.97478 1.23414 1.00226 0.91061 0.88781 1.89424 1.63790 1.37477 1.35391 0.92241 0.89319 0.89532 0.77036 0.84828 0.84471 0.84460 0.84533 0.90447 0.90619 0.90558 0.90802 0.88952 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.42 13.22 55.49 0.73 -25.69 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.60 29.55 -169.99 -5.02 16.57 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.53 -15.41 9.50 30.94 0.29 -15.11 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 10 C -0.15 -3.13 6.16 36.00 0.22 -2.91 16 11 C 0.54 10.24 7.25 -10.99 -0.08 10.16 16 12 O -0.50 -11.47 14.85 1.78 0.03 -11.44 16 13 N -0.73 -9.97 4.96 -54.93 -0.27 -10.24 16 14 C 0.20 2.29 2.04 -69.08 -0.14 2.15 16 15 H 0.11 1.49 7.20 -51.93 -0.37 1.11 16 16 C -0.10 -0.86 4.52 -104.62 -0.47 -1.34 16 17 C -0.08 -0.65 9.09 -39.59 -0.36 -1.01 16 18 C -0.15 -1.16 10.03 -39.51 -0.40 -1.56 16 19 C 0.10 0.85 7.30 -39.42 -0.29 0.56 16 20 F -0.14 -1.34 17.27 2.25 0.04 -1.30 16 21 C -0.15 -1.16 10.03 -39.51 -0.40 -1.56 16 22 C -0.07 -0.59 9.29 -39.59 -0.37 -0.96 16 23 C 0.07 0.75 3.00 -25.96 -0.08 0.67 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 25 C -0.15 -1.27 5.96 -25.17 -0.15 -1.42 16 26 C -0.15 -1.34 7.09 -25.17 -0.18 -1.51 16 27 C 0.04 0.48 7.63 37.93 0.29 0.76 16 28 O -0.34 -5.22 10.10 -39.01 -0.39 -5.61 16 29 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 30 H 0.09 1.72 8.14 -51.92 -0.42 1.29 16 31 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 32 H 0.39 4.21 6.87 -40.82 -0.28 3.93 16 33 H 0.13 0.86 6.86 -52.48 -0.36 0.50 16 34 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 35 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 36 H 0.14 0.90 8.03 -52.49 -0.42 0.48 16 37 H 0.08 0.65 7.67 -51.93 -0.40 0.25 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 370.23 15.07 5.58 5.58 Total: -1.00 -35.78 370.23 -9.33 -45.11 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -5.61 Total: 1.87 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -2.20 Total: -11.06 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: 0.46 Total: -35.93 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.37 Total: -17.05 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.78 -9.33 -45.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055946139.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.129 kcal (2) G-P(sol) polarization free energy of solvation -35.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds