Wall clock time and date at job start Tue Mar 31 2020 22:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86795 * 119.99826 * 2 1 4 4 H 1.48495 * 109.47588 * 269.99987 * 3 2 1 5 5 H 1.48504 * 109.47010 * 30.00136 * 3 2 1 6 6 H 1.48506 * 109.47057 * 149.99680 * 3 2 1 7 7 C 1.38795 * 120.00213 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00316 * 180.02562 * 7 2 1 9 9 S 1.76200 * 119.99919 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00324 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47593 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99651 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00240 * 180.02562 * 11 10 9 14 14 C 1.46502 * 120.00006 * 174.87944 * 13 11 10 15 15 H 1.08996 * 109.47266 * 31.42355 * 14 13 11 16 16 C 1.50700 * 109.46974 * 151.42591 * 14 13 11 17 17 C 1.38241 * 119.97512 * 39.71838 * 16 14 13 18 18 C 1.38203 * 120.02409 * 179.76540 * 17 16 14 19 19 C 1.38462 * 119.97309 * 0.51427 * 18 17 16 20 20 F 1.35094 * 120.02389 * 179.76671 * 19 18 17 21 21 C 1.38458 * 119.94884 * 359.74268 * 19 18 17 22 22 C 1.38201 * 119.97308 * 0.02562 * 21 19 18 23 23 C 1.52999 * 109.46810 * 271.42433 * 14 13 11 24 24 H 1.09004 * 110.33004 * 296.86487 * 23 14 13 25 25 C 1.54475 * 110.37060 * 174.61399 * 23 14 13 26 26 C 1.54507 * 104.06129 * 217.18870 * 25 23 14 27 27 C 1.54471 * 104.06370 * 359.97438 * 26 25 23 28 28 O 1.44423 * 110.37375 * 59.11197 * 23 14 13 29 29 H 0.96995 * 120.00729 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.46654 * 59.99703 * 10 9 7 31 31 H 1.08997 * 109.47050 * 300.00292 * 10 9 7 32 32 H 0.96999 * 119.99420 * 354.87079 * 13 11 10 33 33 H 1.08005 * 119.98937 * 0.02562 * 17 16 14 34 34 H 1.08001 * 120.00933 * 180.25834 * 18 17 16 35 35 H 1.07991 * 120.01009 * 180.02562 * 21 19 18 36 36 H 1.07995 * 119.98703 * 179.97438 * 22 21 19 37 37 H 1.08998 * 110.51346 * 335.83630 * 25 23 14 38 38 H 1.09001 * 110.51086 * 98.40898 * 25 23 14 39 39 H 1.09004 * 110.51272 * 118.64683 * 26 25 23 40 40 H 1.09005 * 110.51432 * 241.21772 * 26 25 23 41 41 H 1.09006 * 110.37475 * 142.81247 * 27 26 25 42 42 H 1.09001 * 110.37197 * 265.03418 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1294 -2.7279 -0.0019 10 6 2.5159 -3.8914 -0.0013 11 6 1.9875 -5.3027 -0.0030 12 8 0.7912 -5.5023 -0.0040 13 7 2.8443 -6.3431 -0.0024 14 6 2.3343 -7.7120 0.1092 15 1 1.3517 -7.7729 -0.3587 16 6 3.2803 -8.6585 -0.5837 17 6 4.6459 -8.4751 -0.4719 18 6 5.5145 -9.3454 -1.1030 19 6 5.0162 -10.3951 -1.8561 20 9 5.8643 -11.2436 -2.4773 21 6 3.6482 -10.5746 -1.9717 22 6 2.7817 -9.7058 -1.3358 23 6 2.2205 -8.0949 1.5861 24 1 3.2045 -8.0923 2.0549 25 6 1.5588 -9.4831 1.7323 26 6 0.6777 -9.3480 2.9943 27 6 0.9119 -7.8944 3.4617 28 8 1.3334 -7.1863 2.2742 29 1 -0.4851 0.8399 -0.0004 30 1 3.1238 -3.7317 0.8892 31 1 3.1252 -3.7310 -0.8907 32 1 3.7985 -6.1855 -0.0760 33 1 5.0343 -7.6539 0.1122 34 1 6.5814 -9.2044 -1.0121 35 1 3.2585 -11.3931 -2.5585 36 1 1.7146 -9.8454 -1.4262 37 1 0.9448 -9.7072 0.8600 38 1 2.3161 -10.2542 1.8734 39 1 -0.3719 -9.5054 2.7460 40 1 0.9978 -10.0537 3.7609 41 1 -0.0126 -7.4671 3.8502 42 1 1.6929 -7.8612 4.2213 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055946139.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:11 Heat of formation + Delta-G solvation = -125.390582 kcal Electronic energy + Delta-G solvation = -26618.383568 eV Core-core repulsion = 22603.036254 eV Total energy + Delta-G solvation = -4015.347314 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.90762 -41.48282 -39.87147 -39.68688 -36.07206 -34.57041 -33.33123 -32.51889 -32.12899 -30.46603 -29.87699 -27.66998 -26.19917 -24.25627 -23.38824 -22.60091 -21.83003 -21.31257 -19.88403 -18.74236 -18.04809 -17.78900 -17.24336 -17.10231 -16.93302 -16.86733 -16.58404 -16.25373 -16.06526 -15.89114 -15.48302 -14.99187 -14.66713 -14.51081 -14.45949 -14.35173 -14.16143 -13.88752 -13.44325 -13.14858 -12.98031 -12.87595 -12.82415 -12.60381 -12.55036 -12.40478 -12.09457 -11.95778 -11.70696 -11.52537 -11.12927 -10.89229 -10.71881 -10.24489 -10.12976 -10.06770 -9.63271 -8.63577 -8.33054 -6.10425 0.02519 0.23939 1.28512 1.43032 1.48054 1.58507 1.73270 2.23665 2.29904 2.55197 2.90749 3.00763 3.26538 3.34410 3.64833 3.67315 3.71344 3.85026 3.95280 3.99927 4.07251 4.14728 4.24380 4.31273 4.33940 4.35589 4.50663 4.52098 4.62034 4.83937 4.86578 4.92176 4.93225 4.95823 5.09420 5.12834 5.17449 5.21058 5.33878 5.42919 5.56407 5.85191 5.99716 6.21186 6.52824 7.07987 7.33915 8.76206 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012836 B = 0.002814 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.918222 B = 9949.621747 C =11530.094046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.546 4.546 8 H 0.082 0.918 9 S -0.147 6.147 10 C -0.129 4.129 11 C 0.542 3.458 12 O -0.547 6.547 13 N -0.711 5.711 14 C 0.199 3.801 15 H 0.083 0.917 16 C -0.101 4.101 17 C -0.081 4.081 18 C -0.147 4.147 19 C 0.085 3.915 20 F -0.148 7.148 21 C -0.148 4.148 22 C -0.075 4.075 23 C 0.062 3.938 24 H 0.081 0.919 25 C -0.140 4.140 26 C -0.147 4.147 27 C 0.033 3.967 28 O -0.390 6.390 29 H 0.271 0.729 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.412 0.588 33 H 0.149 0.851 34 H 0.155 0.845 35 H 0.154 0.846 36 H 0.147 0.853 37 H 0.077 0.923 38 H 0.099 0.901 39 H 0.073 0.927 40 H 0.099 0.901 41 H 0.081 0.919 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.172 -25.605 1.973 28.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.182 1.182 7 C -0.694 4.694 8 H 0.100 0.900 9 S 0.080 5.920 10 C -0.280 4.280 11 C 0.327 3.673 12 O -0.423 6.423 13 N -0.366 5.366 14 C 0.093 3.907 15 H 0.101 0.899 16 C -0.102 4.102 17 C -0.099 4.099 18 C -0.166 4.166 19 C 0.066 3.934 20 F -0.126 7.126 21 C -0.167 4.167 22 C -0.093 4.093 23 C 0.004 3.996 24 H 0.099 0.901 25 C -0.178 4.178 26 C -0.185 4.185 27 C -0.044 4.044 28 O -0.310 6.310 29 H 0.080 0.920 30 H 0.123 0.877 31 H 0.125 0.875 32 H 0.249 0.751 33 H 0.167 0.833 34 H 0.173 0.827 35 H 0.172 0.828 36 H 0.164 0.836 37 H 0.096 0.904 38 H 0.117 0.883 39 H 0.091 0.909 40 H 0.117 0.883 41 H 0.100 0.900 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.000 -25.659 1.896 27.604 hybrid contribution 1.951 1.141 -0.062 2.261 sum 11.951 -24.518 1.834 27.337 Atomic orbital electron populations 1.70186 1.07977 1.28569 1.48098 1.26129 0.95967 1.03310 0.93785 0.84952 0.78194 0.76014 0.78803 1.19265 1.20303 1.18204 1.23213 0.95330 0.92134 1.58750 0.90028 1.85576 1.10440 0.99001 1.96998 1.23360 1.03557 0.94726 1.06359 1.19885 0.86313 0.86297 0.74766 1.90684 1.17133 1.85736 1.48792 1.45729 1.10325 1.04601 1.75940 1.19730 0.97175 0.79868 0.93880 0.89909 1.19682 0.93985 0.96808 0.99760 1.20987 0.91639 0.98954 0.98337 1.21319 1.02170 0.94558 0.98543 1.18011 0.88044 0.90783 0.96548 1.91492 1.70753 1.69529 1.80854 1.21312 0.91066 1.02032 1.02299 1.21035 1.00975 0.92890 0.94392 1.23542 0.94582 0.89530 0.91989 0.90072 1.22929 0.99760 0.96138 0.98949 1.22908 1.01072 0.96385 0.98113 1.23589 1.00222 0.92367 0.88213 1.89382 1.64856 1.39763 1.36971 0.92023 0.87736 0.87452 0.75055 0.83307 0.82739 0.82845 0.83574 0.90416 0.88286 0.90858 0.88286 0.90020 0.91325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.77 13.22 21.65 0.29 -56.49 16 2 C 0.01 0.73 5.49 84.86 0.47 1.20 16 3 Si 1.00 44.10 29.55 68.60 2.03 46.13 16 4 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 5 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 6 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 7 C -0.55 -31.72 9.50 67.95 0.65 -31.08 16 8 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 9 S -0.15 -8.37 20.57 -56.49 -1.16 -9.53 16 10 C -0.13 -5.28 6.16 71.23 0.44 -4.85 16 11 C 0.54 20.70 7.25 87.66 0.64 21.33 16 12 O -0.55 -26.02 14.85 0.57 0.01 -26.02 16 13 N -0.71 -18.59 4.96 -446.10 -2.21 -20.80 16 14 C 0.20 4.48 2.04 44.24 0.09 4.57 16 15 H 0.08 2.33 7.20 -2.39 -0.02 2.31 16 16 C -0.10 -1.63 4.52 -19.86 -0.09 -1.72 16 17 C -0.08 -1.06 9.09 22.26 0.20 -0.86 16 18 C -0.15 -1.89 10.03 22.31 0.22 -1.67 16 19 C 0.09 1.28 7.30 22.38 0.16 1.45 16 20 F -0.15 -2.54 17.27 44.97 0.78 -1.77 16 21 C -0.15 -1.97 10.03 22.31 0.22 -1.75 16 22 C -0.07 -1.05 9.29 22.26 0.21 -0.84 16 23 C 0.06 1.33 3.00 31.10 0.09 1.43 16 24 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 25 C -0.14 -2.18 5.96 31.61 0.19 -1.99 16 26 C -0.15 -2.34 7.09 31.61 0.22 -2.12 16 27 C 0.03 0.73 7.63 72.48 0.55 1.28 16 28 O -0.39 -12.01 10.10 -145.37 -1.47 -13.48 16 29 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 30 H 0.10 3.94 8.14 -2.39 -0.02 3.92 16 31 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 32 H 0.41 7.87 6.87 -92.71 -0.64 7.24 16 33 H 0.15 1.43 6.86 -2.91 -0.02 1.41 16 34 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 35 H 0.15 1.48 8.06 -2.92 -0.02 1.45 16 36 H 0.15 1.72 8.03 -2.91 -0.02 1.70 16 37 H 0.08 1.20 7.67 -2.39 -0.02 1.18 16 38 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 41 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 42 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -80.63 370.23 2.93 -77.70 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: 0.41 Total: 19.86 kcal Atomic # 6 Polarization: -19.87 SS G_CDS: 4.27 Total: -15.61 kcal Atomic # 7 Polarization: -75.36 SS G_CDS: -1.93 Total: -77.29 kcal Atomic # 8 Polarization: -38.03 SS G_CDS: -1.46 Total: -39.49 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.78 Total: -1.77 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 16 Polarization: -8.37 SS G_CDS: -1.16 Total: -9.53 kcal Total: -80.63 2.93 -77.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055946139.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.691 kcal (2) G-P(sol) polarization free energy of solvation -80.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds