Wall clock time and date at job start Tue Mar 31 2020 22:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86795 * 120.00062 * 2 1 4 4 H 1.48506 * 109.47046 * 240.00129 * 3 2 1 5 5 H 1.48494 * 109.47186 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47085 * 120.00307 * 3 2 1 7 7 C 1.38800 * 119.99503 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99568 * 179.97438 * 7 2 1 9 9 S 1.76198 * 120.00565 * 0.02562 * 7 2 1 10 10 C 1.80991 * 100.00291 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47241 * 179.97438 * 10 9 7 12 12 O 1.21278 * 119.99862 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00271 * 179.97438 * 11 10 9 14 14 C 1.46498 * 120.00104 * 175.16893 * 13 11 10 15 15 H 1.08996 * 109.47155 * 39.18285 * 14 13 11 16 16 C 1.50705 * 109.47163 * 279.17944 * 14 13 11 17 17 C 1.38237 * 119.97564 * 319.72487 * 16 14 13 18 18 C 1.38203 * 120.02726 * 179.76487 * 17 16 14 19 19 C 1.38459 * 119.97146 * 0.50992 * 18 17 16 20 20 F 1.35094 * 120.02684 * 179.76390 * 19 18 17 21 21 C 1.38462 * 119.94467 * 359.74656 * 19 18 17 22 22 C 1.38189 * 119.97919 * 359.97438 * 21 19 18 23 23 C 1.53008 * 109.47079 * 159.18316 * 14 13 11 24 24 H 1.08997 * 109.82107 * 60.54794 * 23 14 13 25 25 C 1.54382 * 109.82454 * 299.56927 * 23 14 13 26 26 C 1.55309 * 102.24931 * 219.12853 * 25 23 14 27 27 C 1.54951 * 100.94150 * 34.13620 * 26 25 23 28 28 O 1.43233 * 109.82674 * 181.43634 * 23 14 13 29 29 H 0.97002 * 119.99743 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.47198 * 59.99868 * 10 9 7 31 31 H 1.09000 * 109.47261 * 299.99962 * 10 9 7 32 32 H 0.97006 * 119.99684 * 354.89766 * 13 11 10 33 33 H 1.07997 * 119.98742 * 0.02562 * 17 16 14 34 34 H 1.07994 * 120.01500 * 180.25635 * 18 17 16 35 35 H 1.08006 * 120.00866 * 179.97438 * 21 19 18 36 36 H 1.08007 * 119.99279 * 179.97438 * 22 21 19 37 37 H 1.08998 * 110.85232 * 337.31561 * 25 23 14 38 38 H 1.08996 * 110.85016 * 100.94920 * 25 23 14 39 39 H 1.08999 * 111.12900 * 276.21604 * 26 25 23 40 40 H 1.09005 * 111.12602 * 152.05064 * 26 25 23 41 41 H 1.08997 * 110.30680 * 204.63714 * 27 26 25 42 42 H 1.09000 * 110.39365 * 82.51519 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0019 10 6 2.5157 -3.8915 -0.0029 11 6 1.9872 -5.3027 -0.0036 12 8 0.7909 -5.5023 -0.0038 13 7 2.8439 -6.3432 -0.0049 14 6 2.3336 -7.7123 0.1013 15 1 1.4196 -7.8060 -0.4850 16 6 2.0389 -8.0280 1.5452 17 6 2.9008 -7.5970 2.5363 18 6 2.6290 -7.8817 3.8610 19 6 1.4984 -8.6080 4.1946 20 9 1.2342 -8.8910 5.4889 21 6 0.6386 -9.0436 3.2006 22 6 0.9094 -8.7528 1.8770 23 6 3.3832 -8.6905 -0.4305 24 1 4.2968 -8.6085 0.1582 25 6 3.6835 -8.3812 -1.9129 26 6 3.8276 -9.8020 -2.5234 27 6 2.7934 -10.5903 -1.6808 28 8 2.8788 -10.0293 -0.3612 29 1 -0.4850 0.8401 0.0004 30 1 3.1243 -3.7322 0.8872 31 1 3.1243 -3.7307 -0.8928 32 1 3.7981 -6.1857 -0.0802 33 1 3.7848 -7.0340 2.2755 34 1 3.3004 -7.5414 4.6355 35 1 -0.2434 -9.6106 3.4596 36 1 0.2391 -9.0929 1.1014 37 1 2.8542 -7.8437 -2.3729 38 1 4.6130 -7.8206 -2.0117 39 1 4.8344 -10.1928 -2.3757 40 1 3.5580 -9.8050 -3.5795 41 1 3.0514 -11.6491 -1.6593 42 1 1.7906 -10.4541 -2.0857 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055946140.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:15 Heat of formation + Delta-G solvation = -104.923644 kcal Electronic energy + Delta-G solvation = -26686.315346 eV Core-core repulsion = 22671.855545 eV Total energy + Delta-G solvation = -4014.459801 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.89345 -40.59322 -39.04621 -38.52190 -35.03565 -32.44579 -32.41334 -31.61812 -31.12242 -29.53008 -28.80918 -25.62647 -25.24395 -23.17024 -22.58434 -21.77717 -20.97402 -20.33270 -17.95304 -17.71802 -17.35210 -16.68214 -16.34118 -16.23257 -15.96062 -15.58431 -15.37507 -14.82048 -14.77643 -14.48014 -14.16397 -13.99584 -13.63954 -13.54560 -13.30320 -13.26692 -12.73742 -12.61919 -12.48216 -12.28350 -12.08445 -11.81907 -11.60418 -11.24239 -11.14997 -11.06364 -11.05142 -11.02255 -10.79072 -9.93805 -9.82719 -9.51120 -9.14160 -9.08194 -9.03616 -8.53897 -8.26175 -6.51941 -6.23136 -3.93994 1.10423 1.24437 2.84291 3.02375 3.22109 3.22971 3.27665 3.47240 3.54709 3.81795 4.12966 4.18846 4.24187 4.36345 4.50866 4.67201 4.73875 4.79069 4.84795 4.91226 5.05535 5.11891 5.12306 5.23739 5.29820 5.35061 5.41821 5.43275 5.52270 5.58687 5.69518 5.81346 5.84375 5.90150 5.94929 6.09272 6.09582 6.21069 6.35691 6.53885 6.72618 6.86821 7.57140 7.59873 8.33134 8.54126 9.22058 10.84203 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.010694 B = 0.003130 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2617.759764 B = 8943.050328 C =10831.356292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.058 6.058 10 C -0.153 4.153 11 C 0.536 3.464 12 O -0.508 6.508 13 N -0.732 5.732 14 C 0.179 3.821 15 H 0.100 0.900 16 C -0.092 4.092 17 C -0.077 4.077 18 C -0.155 4.155 19 C 0.094 3.906 20 F -0.144 7.144 21 C -0.154 4.154 22 C -0.061 4.061 23 C 0.082 3.918 24 H 0.086 0.914 25 C -0.152 4.152 26 C -0.156 4.156 27 C 0.047 3.953 28 O -0.365 6.365 29 H 0.269 0.731 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.398 0.602 33 H 0.128 0.872 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.131 0.869 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.998 -22.105 -1.152 24.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.169 5.831 10 C -0.304 4.304 11 C 0.323 3.677 12 O -0.381 6.381 13 N -0.387 5.387 14 C 0.073 3.927 15 H 0.118 0.882 16 C -0.094 4.094 17 C -0.095 4.095 18 C -0.174 4.174 19 C 0.075 3.925 20 F -0.122 7.122 21 C -0.173 4.173 22 C -0.080 4.080 23 C 0.024 3.976 24 H 0.104 0.896 25 C -0.189 4.189 26 C -0.194 4.194 27 C -0.029 4.029 28 O -0.283 6.283 29 H 0.079 0.921 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.232 0.768 33 H 0.146 0.854 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.149 0.851 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.097 0.903 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.738 -22.444 -0.909 23.758 hybrid contribution 2.409 1.480 0.093 2.829 sum 10.147 -20.964 -0.817 23.305 Atomic orbital electron populations 1.70006 1.05957 1.27594 1.46691 1.24985 0.95018 0.99012 0.94502 0.86231 0.79252 0.81266 0.78799 1.19933 1.20805 1.19930 1.22824 0.94861 0.91682 1.59170 0.90985 1.85424 1.04732 0.96254 1.96720 1.23530 1.06692 0.95210 1.04928 1.20311 0.86515 0.86102 0.74817 1.90713 1.15300 1.85399 1.46704 1.45924 1.10290 1.04711 1.77801 1.20017 0.98463 0.81604 0.92579 0.88247 1.20091 0.95322 0.98487 0.95482 1.20734 0.99219 0.98123 0.91414 1.21062 0.97522 1.01096 0.97680 1.17712 0.96424 1.00194 0.78205 1.91479 1.93930 1.91972 1.34867 1.21082 1.00357 1.03245 0.92588 1.20782 0.95950 0.95931 0.95323 1.22862 0.95438 0.82845 0.96487 0.89591 1.23210 1.03718 0.97764 0.94237 1.23271 1.00326 0.95051 1.00709 1.23441 0.98687 0.98115 0.82685 1.88488 1.86377 1.26066 1.27373 0.92106 0.89164 0.89227 0.76782 0.85445 0.84933 0.84878 0.85127 0.89659 0.89573 0.90325 0.89737 0.89592 0.91950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.99 13.22 55.49 0.73 -25.26 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.19 29.55 -169.99 -5.02 16.17 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 7 C -0.54 -15.09 9.50 30.94 0.29 -14.79 16 8 H 0.07 1.90 7.80 -52.48 -0.41 1.49 16 9 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 10 C -0.15 -2.94 6.16 36.00 0.22 -2.72 16 11 C 0.54 9.37 7.74 -10.99 -0.09 9.28 16 12 O -0.51 -11.05 15.57 5.56 0.09 -10.97 16 13 N -0.73 -8.75 3.99 -54.93 -0.22 -8.97 16 14 C 0.18 2.05 1.80 -69.08 -0.12 1.93 16 15 H 0.10 1.33 7.50 -51.93 -0.39 0.94 16 16 C -0.09 -1.16 4.55 -104.62 -0.48 -1.64 16 17 C -0.08 -0.92 9.32 -39.59 -0.37 -1.28 16 18 C -0.15 -1.89 10.03 -39.51 -0.40 -2.29 16 19 C 0.09 1.23 7.30 -39.42 -0.29 0.94 16 20 F -0.14 -1.94 17.27 2.25 0.04 -1.90 16 21 C -0.15 -1.91 10.03 -39.52 -0.40 -2.31 16 22 C -0.06 -0.78 9.67 -39.60 -0.38 -1.16 16 23 C 0.08 0.72 3.10 -26.00 -0.08 0.64 16 24 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 25 C -0.15 -1.09 6.17 -24.78 -0.15 -1.25 16 26 C -0.16 -0.94 7.16 -24.48 -0.18 -1.11 16 27 C 0.05 0.34 7.78 38.19 0.30 0.64 16 28 O -0.36 -3.61 10.69 -35.23 -0.38 -3.99 16 29 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.09 1.61 8.14 -51.91 -0.42 1.19 16 31 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 32 H 0.40 3.46 8.55 -40.82 -0.35 3.11 16 33 H 0.13 1.26 7.72 -52.49 -0.41 0.86 16 34 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 35 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 36 H 0.13 1.49 8.04 -52.48 -0.42 1.07 16 37 H 0.08 0.72 7.85 -51.93 -0.41 0.32 16 38 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 375.00 15.07 5.65 5.65 Total: -1.00 -34.76 375.00 -9.28 -44.03 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -5.75 Total: 2.09 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: -2.21 Total: -13.11 kcal Atomic # 7 Polarization: -34.74 SS G_CDS: 0.51 Total: -34.23 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -0.29 Total: -14.95 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.76 -9.28 -44.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055946140.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.890 kcal (2) G-P(sol) polarization free energy of solvation -34.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds