Wall clock time and date at job start Tue Mar 31 2020 22:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86795 * 120.00062 * 2 1 4 4 H 1.48506 * 109.47046 * 240.00129 * 3 2 1 5 5 H 1.48494 * 109.47186 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47085 * 120.00307 * 3 2 1 7 7 C 1.38800 * 119.99503 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99568 * 179.97438 * 7 2 1 9 9 S 1.76198 * 120.00565 * 0.02562 * 7 2 1 10 10 C 1.80991 * 100.00291 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47241 * 179.97438 * 10 9 7 12 12 O 1.21278 * 119.99862 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00271 * 179.97438 * 11 10 9 14 14 C 1.46498 * 120.00104 * 175.16893 * 13 11 10 15 15 H 1.08996 * 109.47155 * 39.18285 * 14 13 11 16 16 C 1.50705 * 109.47163 * 279.17944 * 14 13 11 17 17 C 1.38237 * 119.97564 * 319.72487 * 16 14 13 18 18 C 1.38203 * 120.02726 * 179.76487 * 17 16 14 19 19 C 1.38459 * 119.97146 * 0.50992 * 18 17 16 20 20 F 1.35094 * 120.02684 * 179.76390 * 19 18 17 21 21 C 1.38462 * 119.94467 * 359.74656 * 19 18 17 22 22 C 1.38189 * 119.97919 * 359.97438 * 21 19 18 23 23 C 1.53008 * 109.47079 * 159.18316 * 14 13 11 24 24 H 1.08997 * 109.82107 * 60.54794 * 23 14 13 25 25 C 1.54382 * 109.82454 * 299.56927 * 23 14 13 26 26 C 1.55309 * 102.24931 * 219.12853 * 25 23 14 27 27 C 1.54951 * 100.94150 * 34.13620 * 26 25 23 28 28 O 1.43233 * 109.82674 * 181.43634 * 23 14 13 29 29 H 0.97002 * 119.99743 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.47198 * 59.99868 * 10 9 7 31 31 H 1.09000 * 109.47261 * 299.99962 * 10 9 7 32 32 H 0.97006 * 119.99684 * 354.89766 * 13 11 10 33 33 H 1.07997 * 119.98742 * 0.02562 * 17 16 14 34 34 H 1.07994 * 120.01500 * 180.25635 * 18 17 16 35 35 H 1.08006 * 120.00866 * 179.97438 * 21 19 18 36 36 H 1.08007 * 119.99279 * 179.97438 * 22 21 19 37 37 H 1.08998 * 110.85232 * 337.31561 * 25 23 14 38 38 H 1.08996 * 110.85016 * 100.94920 * 25 23 14 39 39 H 1.08999 * 111.12900 * 276.21604 * 26 25 23 40 40 H 1.09005 * 111.12602 * 152.05064 * 26 25 23 41 41 H 1.08997 * 110.30680 * 204.63714 * 27 26 25 42 42 H 1.09000 * 110.39365 * 82.51519 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0019 10 6 2.5157 -3.8915 -0.0029 11 6 1.9872 -5.3027 -0.0036 12 8 0.7909 -5.5023 -0.0038 13 7 2.8439 -6.3432 -0.0049 14 6 2.3336 -7.7123 0.1013 15 1 1.4196 -7.8060 -0.4850 16 6 2.0389 -8.0280 1.5452 17 6 2.9008 -7.5970 2.5363 18 6 2.6290 -7.8817 3.8610 19 6 1.4984 -8.6080 4.1946 20 9 1.2342 -8.8910 5.4889 21 6 0.6386 -9.0436 3.2006 22 6 0.9094 -8.7528 1.8770 23 6 3.3832 -8.6905 -0.4305 24 1 4.2968 -8.6085 0.1582 25 6 3.6835 -8.3812 -1.9129 26 6 3.8276 -9.8020 -2.5234 27 6 2.7934 -10.5903 -1.6808 28 8 2.8788 -10.0293 -0.3612 29 1 -0.4850 0.8401 0.0004 30 1 3.1243 -3.7322 0.8872 31 1 3.1243 -3.7307 -0.8928 32 1 3.7981 -6.1857 -0.0802 33 1 3.7848 -7.0340 2.2755 34 1 3.3004 -7.5414 4.6355 35 1 -0.2434 -9.6106 3.4596 36 1 0.2391 -9.0929 1.1014 37 1 2.8542 -7.8437 -2.3729 38 1 4.6130 -7.8206 -2.0117 39 1 4.8344 -10.1928 -2.3757 40 1 3.5580 -9.8050 -3.5795 41 1 3.0514 -11.6491 -1.6593 42 1 1.7906 -10.4541 -2.0857 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055946140.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:14 Heat of formation + Delta-G solvation = -126.881148 kcal Electronic energy + Delta-G solvation = -26687.267495 eV Core-core repulsion = 22671.855545 eV Total energy + Delta-G solvation = -4015.411950 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.91681 -41.53846 -40.03017 -39.58838 -36.16981 -34.56751 -33.01183 -32.78233 -32.08703 -30.53216 -29.93750 -27.66174 -26.24559 -24.11999 -23.35820 -22.40665 -21.98722 -21.50604 -19.83960 -18.72477 -18.21725 -17.89689 -17.34131 -17.19373 -16.86553 -16.83158 -16.59555 -16.49583 -16.11491 -15.63483 -15.30837 -15.10614 -14.71135 -14.51465 -14.47051 -14.24901 -14.09296 -13.65459 -13.51358 -13.45029 -13.15074 -12.93318 -12.84476 -12.67118 -12.60804 -12.13126 -12.01406 -11.96798 -11.74559 -11.69092 -11.11297 -11.00214 -10.60691 -10.25463 -10.24098 -10.04796 -9.52448 -8.64145 -8.33013 -6.10521 0.11776 0.28787 1.27347 1.44735 1.47362 1.56364 1.62831 2.11193 2.29328 2.60102 2.99907 3.01363 3.27307 3.34296 3.54437 3.55955 3.74524 3.85755 3.94167 4.01525 4.05268 4.16999 4.23032 4.33202 4.35141 4.37758 4.48029 4.54506 4.66631 4.84818 4.92392 4.95250 4.98146 4.99419 5.05279 5.13720 5.23983 5.25364 5.30756 5.43355 5.58336 5.90817 6.05036 6.21112 6.49162 7.08516 7.25350 8.75812 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.010694 B = 0.003130 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2617.759764 B = 8943.050328 C =10831.356292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.014 3.986 3 Si 0.996 3.004 4 H -0.260 1.260 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.546 4.546 8 H 0.084 0.916 9 S -0.152 6.152 10 C -0.128 4.128 11 C 0.541 3.459 12 O -0.558 6.558 13 N -0.701 5.701 14 C 0.184 3.816 15 H 0.076 0.924 16 C -0.103 4.103 17 C -0.082 4.082 18 C -0.158 4.158 19 C 0.074 3.926 20 F -0.149 7.149 21 C -0.160 4.160 22 C -0.078 4.078 23 C 0.088 3.912 24 H 0.104 0.896 25 C -0.152 4.152 26 C -0.148 4.148 27 C 0.039 3.961 28 O -0.385 6.385 29 H 0.270 0.730 30 H 0.110 0.890 31 H 0.114 0.886 32 H 0.419 0.581 33 H 0.151 0.849 34 H 0.151 0.849 35 H 0.147 0.853 36 H 0.134 0.866 37 H 0.069 0.931 38 H 0.107 0.893 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.283 -22.300 -1.601 26.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.191 4.191 3 Si 0.818 3.182 4 H -0.185 1.185 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.075 5.925 10 C -0.280 4.280 11 C 0.327 3.673 12 O -0.435 6.435 13 N -0.357 5.357 14 C 0.078 3.922 15 H 0.094 0.906 16 C -0.104 4.104 17 C -0.100 4.100 18 C -0.177 4.177 19 C 0.055 3.945 20 F -0.128 7.128 21 C -0.178 4.178 22 C -0.096 4.096 23 C 0.030 3.970 24 H 0.122 0.878 25 C -0.189 4.189 26 C -0.185 4.185 27 C -0.037 4.037 28 O -0.304 6.304 29 H 0.079 0.921 30 H 0.128 0.872 31 H 0.132 0.868 32 H 0.257 0.743 33 H 0.169 0.831 34 H 0.169 0.831 35 H 0.165 0.835 36 H 0.152 0.848 37 H 0.087 0.913 38 H 0.125 0.875 39 H 0.110 0.890 40 H 0.113 0.887 41 H 0.117 0.883 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.084 -22.681 -1.364 25.281 hybrid contribution 1.395 1.378 0.229 1.974 sum 12.478 -21.302 -1.136 24.714 Atomic orbital electron populations 1.70182 1.08005 1.28600 1.48080 1.26109 0.95912 1.03297 0.93803 0.85031 0.77816 0.75796 0.79538 1.18493 1.20637 1.18706 1.23184 0.95392 0.92020 1.58765 0.89761 1.85629 1.10599 0.99230 1.97053 1.23365 1.03534 0.94057 1.07010 1.20023 0.86166 0.86458 0.74625 1.90710 1.17486 1.85914 1.49362 1.45526 1.10731 1.03912 1.75526 1.20050 0.98757 0.81436 0.91954 0.90551 1.20301 0.95478 0.98505 0.96159 1.21014 0.99840 0.98084 0.91085 1.21347 0.97409 1.00502 0.98445 1.17957 0.97258 1.01132 0.78135 1.91460 1.94047 1.92124 1.35159 1.21285 1.00835 1.03233 0.92489 1.20966 0.96442 0.96564 0.95639 1.22872 0.94617 0.81873 0.97671 0.87793 1.23234 1.04055 0.98687 0.92942 1.23261 1.00546 0.93798 1.00921 1.23621 0.99083 0.99041 0.81991 1.88474 1.86568 1.26361 1.28947 0.92080 0.87150 0.86783 0.74282 0.83094 0.83093 0.83532 0.84781 0.91261 0.87460 0.88997 0.88722 0.88261 0.92465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.76 13.22 21.65 0.29 -55.47 16 2 C 0.01 0.76 5.49 84.86 0.47 1.23 16 3 Si 1.00 42.96 29.55 68.60 2.03 44.99 16 4 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 5 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 6 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 7 C -0.55 -30.53 9.50 67.95 0.65 -29.88 16 8 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16 9 S -0.15 -8.26 20.57 -56.49 -1.16 -9.42 16 10 C -0.13 -4.75 6.16 71.24 0.44 -4.31 16 11 C 0.54 18.44 7.74 87.66 0.68 19.11 16 12 O -0.56 -24.76 15.57 -3.02 -0.05 -24.81 16 13 N -0.70 -15.33 3.99 -446.09 -1.78 -17.11 16 14 C 0.18 4.00 1.80 44.25 0.08 4.08 16 15 H 0.08 2.07 7.50 -2.39 -0.02 2.05 16 16 C -0.10 -2.51 4.55 -19.86 -0.09 -2.60 16 17 C -0.08 -1.82 9.32 22.26 0.21 -1.61 16 18 C -0.16 -3.68 10.03 22.31 0.22 -3.45 16 19 C 0.07 1.93 7.30 22.38 0.16 2.09 16 20 F -0.15 -3.99 17.27 44.97 0.78 -3.21 16 21 C -0.16 -3.99 10.03 22.31 0.22 -3.77 16 22 C -0.08 -1.98 9.67 22.26 0.22 -1.77 16 23 C 0.09 1.35 3.10 31.07 0.10 1.45 16 24 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 25 C -0.15 -1.80 6.17 31.86 0.20 -1.60 16 26 C -0.15 -1.39 7.16 32.05 0.23 -1.16 16 27 C 0.04 0.50 7.78 72.65 0.57 1.07 16 28 O -0.38 -7.08 10.69 -148.98 -1.59 -8.67 16 29 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 30 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 31 H 0.11 3.67 8.14 -2.40 -0.02 3.65 16 32 H 0.42 5.77 8.55 -92.70 -0.79 4.97 16 33 H 0.15 2.50 7.72 -2.91 -0.02 2.48 16 34 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 35 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 36 H 0.13 3.19 8.04 -2.91 -0.02 3.17 16 37 H 0.07 1.07 7.85 -2.39 -0.02 1.05 16 38 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 41 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -78.05 375.00 3.10 -74.96 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: 0.25 Total: 19.86 kcal Atomic # 6 Polarization: -25.46 SS G_CDS: 4.34 Total: -21.12 kcal Atomic # 7 Polarization: -71.09 SS G_CDS: -1.49 Total: -72.58 kcal Atomic # 8 Polarization: -31.84 SS G_CDS: -1.64 Total: -33.48 kcal Atomic # 9 Polarization: -3.99 SS G_CDS: 0.78 Total: -3.21 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Atomic # 16 Polarization: -8.26 SS G_CDS: -1.16 Total: -9.42 kcal Total: -78.05 3.10 -74.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055946140.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.923 kcal (2) G-P(sol) polarization free energy of solvation -78.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds